Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:30484772-31524798

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnd2 15 30172593 to 31029341 856748 + protein coding gene catenin (cadherin associated protein), delta 2
Tssr130931 15 30485863 to 30485880 17 + TSS region transcription start site region 130931
Tssr130932 15 30496802 to 30496808 6 + TSS region transcription start site region 130932
Tssr130933 15 30498580 to 30498583 3 + TSS region transcription start site region 130933
Tssr130934 15 30500579 to 30500584 5 + TSS region transcription start site region 130934
Gm41284 15 30516933 to 30534114 17181 + lncRNA gene predicted gene, 41284
Tssr130935 15 30539583 to 30539596 13 + TSS region transcription start site region 130935
D15Mit203 15 30589760 to 30589835 75 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 203
Gm23956 15 30590287 to 30590405 118 + rRNA gene predicted gene, 23956
4930570B17Rik 15 30597094 to 30626621 29527 - antisense lncRNA gene RIKEN cDNA 4930570B17 gene
Gm24487 15 30601514 to 30601576 62 + snRNA gene predicted gene, 24487
D15Mit1000 15 30605241 to 30605333 92 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1000
Tssr130936 15 30632982 to 30632985 3 + TSS region transcription start site region 130936
Tssr130937 15 30634693 to 30634709 16 + TSS region transcription start site region 130937
Tssr130938 15 30634743 to 30634756 13 + TSS region transcription start site region 130938
Tssr130939 15 30646235 to 30646237 2 + TSS region transcription start site region 130939
Cpgi6993 15 30646375 to 30647603 1228 CpG island CpG island 6993
Tssr130940 15 30646514 to 30646572 58 + TSS region transcription start site region 130940
Tssr130941 15 30646582 to 30646599 17 + TSS region transcription start site region 130941
Tssr130942 15 30646667 to 30646686 19 + TSS region transcription start site region 130942
Tssr130943 15 30646703 to 30646716 13 + TSS region transcription start site region 130943
Tssr130944 15 30646733 to 30646775 42 + TSS region transcription start site region 130944
Tssr130945 15 30646847 to 30646911 64 + TSS region transcription start site region 130945
Tssr130946 15 30646936 to 30646956 20 + TSS region transcription start site region 130946
Tssr130947 15 30647008 to 30647084 76 + TSS region transcription start site region 130947
Gm31841 15 30673142 to 30675474 2332 - lncRNA gene predicted gene, 31841
Gm41283 15 30721681 to 30732723 11042 + lncRNA gene predicted gene, 41283
Tssr130948 15 30730205 to 30730211 6 + TSS region transcription start site region 130948
D15Mit136 15 30846860 to 30847002 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 136
Yv 15 30846860 to 30847002 142 QTL yellow value
Pheo 15 30846860 to 30847002 142 QTL pheomelanin
9630009A06Rik 15 30961300 to 30962878 1578 - antisense lncRNA gene RIKEN cDNA 9630009A06 gene
D15Mit202 15 30995683 to 30995798 115 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 202
Tssr130949 15 31004772 to 31004798 26 + TSS region transcription start site region 130949
Tssr130950 15 31027774 to 31027780 6 + TSS region transcription start site region 130950
4930430F21Rik 15 31039128 to 31043331 4203 + lincRNA gene RIKEN cDNA 4930430F21 gene
Gm32011 15 31092220 to 31117266 25046 + lncRNA gene predicted gene, 32011
Tssr130951 15 31103305 to 31103309 4 + TSS region transcription start site region 130951
Gm32070 15 31131006 to 31135849 4843 - lncRNA gene predicted gene, 32070
Gm26416 15 31194205 to 31194338 133 - snoRNA gene predicted gene, 26416
Cpgi6994 15 31223666 to 31224802 1136 CpG island CpG island 6994
Tssr130952 15 31224371 to 31224400 29 + TSS region transcription start site region 130952
Dap 15 31224385 to 31274338 49953 + protein coding gene death-associated protein
Tssr130953 15 31224406 to 31224530 124 + TSS region transcription start site region 130953
Tssr133915 15 31224759 to 31224767 8 - TSS region transcription start site region 133915
Tssr130954 15 31225117 to 31225138 21 + TSS region transcription start site region 130954
Tssr130955 15 31225156 to 31225196 40 + TSS region transcription start site region 130955
Tssr130956 15 31235783 to 31235805 22 + TSS region transcription start site region 130956
D15Mit99 15 31238643 to 31238723 80 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 99
Gm41285 15 31254916 to 31263456 8540 - lncRNA gene predicted gene, 41285
Tssr133916 15 31268191 to 31268218 27 - TSS region transcription start site region 133916
Tssr130957 15 31268262 to 31268266 4 + TSS region transcription start site region 130957
Tssr130958 15 31268272 to 31268290 18 + TSS region transcription start site region 130958
Tssr130959 15 31268293 to 31268323 30 + TSS region transcription start site region 130959
Tssr130960 15 31273192 to 31273218 26 + TSS region transcription start site region 130960
Fam136b-ps 15 31276491 to 31276902 411 + pseudogene family with sequence similarity 136, member B, pseudogene
Gm49296 15 31282089 to 31283136 1047 + unclassified gene predicted gene, 49296
D15Mit38 15 31286683 to 31286817 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 38
Ankrd33b 15 31291478 to 31367726 76248 - protein coding gene ankyrin repeat domain 33B
Cpgi6995 15 31297063 to 31298018 955 CpG island CpG island 6995
Tssr133917 15 31318501 to 31318511 10 - TSS region transcription start site region 133917
Tssr133918 15 31325315 to 31325336 21 - TSS region transcription start site region 133918
Tssr130961 15 31331983 to 31331991 8 + TSS region transcription start site region 130961
Tssr130962 15 31332022 to 31332031 9 + TSS region transcription start site region 130962
Tssr133919 15 31336719 to 31336730 11 - TSS region transcription start site region 133919
Tssr133920 15 31336742 to 31336751 9 - TSS region transcription start site region 133920
Tssr130963 15 31337015 to 31337025 10 + TSS region transcription start site region 130963
Tssr133921 15 31338086 to 31338093 7 - TSS region transcription start site region 133921
Tssr133922 15 31338692 to 31338703 11 - TSS region transcription start site region 133922
Tssr4571 15 31338711 to 31338730 19 - TSS region transcription start site region 4571
Tssr130964 15 31338942 to 31338980 38 + TSS region transcription start site region 130964
Tssr130965 15 31339269 to 31339297 28 + TSS region transcription start site region 130965
Tssr4572 15 31342291 to 31342323 32 + TSS region transcription start site region 4572
Cpgi6996 15 31344765 to 31345061 296 CpG island CpG island 6996
Tssr130966 15 31350199 to 31350207 8 + TSS region transcription start site region 130966
Tssr133923 15 31356937 to 31356954 17 - TSS region transcription start site region 133923
Cpgi6997 15 31366120 to 31368111 1991 CpG island CpG island 6997
Tssr133924 15 31367490 to 31367504 14 - TSS region transcription start site region 133924
Tssr133925 15 31367527 to 31367580 53 - TSS region transcription start site region 133925
Tssr133926 15 31367731 to 31367791 60 - TSS region transcription start site region 133926
Gm49300 15 31368362 to 31370305 1943 + unclassified gene predicted gene, 49300
Gm41286 15 31401062 to 31408707 7645 - lncRNA gene predicted gene, 41286
Ropn1l 15 31441210 to 31453689 12479 - protein coding gene ropporin 1-like
Gm6361 15 31446383 to 31446817 434 - pseudogene predicted gene 6361
Tssr133927 15 31449039 to 31449065 26 - TSS region transcription start site region 133927
Cpgi6998 15 31453297 to 31453938 641 CpG island CpG island 6998
Tssr133928 15 31453496 to 31453507 11 - TSS region transcription start site region 133928
Tssr133929 15 31453564 to 31453694 130 - TSS region transcription start site region 133929
Gm49208 15 31453738 to 31454901 1163 + bidirectional promoter lncRNA gene predicted gene, 49208
March6 15 31455899 to 31531048 75149 - protein coding gene membrane-associated ring finger (C3HC4) 6
Gm49214 15 31462281 to 31462631 350 + pseudogene predicted gene, 49214
Tssr133930 15 31467907 to 31467921 14 - TSS region transcription start site region 133930
Tssr133931 15 31467938 to 31467952 14 - TSS region transcription start site region 133931
Tssr133932 15 31467971 to 31467980 9 - TSS region transcription start site region 133932
Gm49216 15 31481756 to 31486929 5173 - sense overlapping lncRNA gene predicted gene, 49216
Tssr133933 15 31503539 to 31503542 3 - TSS region transcription start site region 133933
Gm49215 15 31520924 to 31521273 349 - pseudogene predicted gene, 49215
Tssr133934 15 31521345 to 31521349 4 - TSS region transcription start site region 133934