Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:27855850-28795853

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa1 15 20807266 to 28493921 7686655 QTL testicular oocyte appearance 1
Trio 15 27730651 to 28025848 295197 - protein coding gene triple functional domain (PTPRF interacting)
Cpgi6987 15 27856131 to 27856701 570 CpG island CpG island 6987
Gm9891 15 27856307 to 27857113 806 + protein coding gene predicted gene 9891
Tssr133891 15 27856427 to 27856463 36 - TSS region transcription start site region 133891
Tssr133892 15 27856466 to 27856485 19 - TSS region transcription start site region 133892
Gm20555 15 27863799 to 27867231 3432 - unclassified gene predicted gene, 20555
Tssr133893 15 27876455 to 27876478 23 - TSS region transcription start site region 133893
Tssr133894 15 27876479 to 27876524 45 - TSS region transcription start site region 133894
Cpgi6988 15 27923660 to 27923922 262 CpG island CpG island 6988
Tssr133895 15 27923692 to 27923739 47 - TSS region transcription start site region 133895
Tssr130903 15 27924243 to 27924256 13 + TSS region transcription start site region 130903
Tssr130904 15 27924296 to 27924309 13 + TSS region transcription start site region 130904
D15Mit45 15 27967386 to 27967550 164 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 45
Tssr133896 15 27968201 to 27968212 11 - TSS region transcription start site region 133896
Tssr133897 15 27968228 to 27968240 12 - TSS region transcription start site region 133897
Tssr133898 15 27968260 to 27968267 7 - TSS region transcription start site region 133898
Tssr130905 15 27968374 to 27968384 10 + TSS region transcription start site region 130905
Gm29975 15 27970010 to 27988987 18977 - protein coding gene predicted gene, 29975
Tssr133899 15 27984779 to 27984783 4 - TSS region transcription start site region 133899
Tssr133900 15 27995320 to 27995338 18 - TSS region transcription start site region 133900
Tssr133901 15 28022187 to 28022190 3 - TSS region transcription start site region 133901
Cpgi6989 15 28023994 to 28026457 2463 CpG island CpG island 6989
Tssr133902 15 28024457 to 28024473 16 - TSS region transcription start site region 133902
Tssr133903 15 28025834 to 28025879 45 - TSS region transcription start site region 133903
Tssr133904 15 28025894 to 28025924 30 - TSS region transcription start site region 133904
Tssr133905 15 28025926 to 28025950 24 - TSS region transcription start site region 133905
Tssr133906 15 28025952 to 28025965 13 - TSS region transcription start site region 133906
Tssr133907 15 28025967 to 28025981 14 - TSS region transcription start site region 133907
Tssr133908 15 28025982 to 28026001 19 - TSS region transcription start site region 133908
Tssr133909 15 28026010 to 28026021 11 - TSS region transcription start site region 133909
Gm41280 15 28027388 to 28031152 3764 + lncRNA gene predicted gene, 41280
Gm19883 15 28041009 to 28041489 480 + pseudogene predicted gene, 19883
Gm31458 15 28045928 to 28066685 20757 - lincRNA gene predicted gene, 31458
Tssr133910 15 28058919 to 28058922 3 - TSS region transcription start site region 133910
Tssr133911 15 28066665 to 28066674 9 - TSS region transcription start site region 133911
Tssr130906 15 28081468 to 28081473 5 + TSS region transcription start site region 130906
Gm8472 15 28123259 to 28123621 362 - pseudogene predicted gene 8472
D15Mit163 15 28153198 to 28153460 262 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163
D15Mit163.2 15 28153389 to 28153506 117 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163.2
Gm49233 15 28154101 to 28155462 1361 - lincRNA gene predicted gene, 49233
Cpgi6990 15 28154820 to 28155195 375 CpG island CpG island 6990
Tssr130907 15 28154925 to 28154968 43 + TSS region transcription start site region 130907
Gm49234 15 28190894 to 28192122 1228 - unclassified gene predicted gene, 49234
Tssr130908 15 28203726 to 28203742 16 + TSS region transcription start site region 130908
Dnah5 15 28203752 to 28472052 268300 + protein coding gene dynein, axonemal, heavy chain 5
Tssr130909 15 28203799 to 28203811 12 + TSS region transcription start site region 130909
Tssr133912 15 28229877 to 28229891 14 - TSS region transcription start site region 133912
Tssr130910 15 28325850 to 28325853 3 + TSS region transcription start site region 130910
D15Mit18 15 28493790 to 28493921 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 18
Gm49278 15 28504755 to 28505191 436 - pseudogene predicted gene, 49278
Gm49279 15 28540214 to 28540471 257 - pseudogene predicted gene, 49279
Tssr130911 15 28576471 to 28576478 7 + TSS region transcription start site region 130911
D15Mit21 15 28626204 to 28626305 101 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 21
Tssr4568 15 28698042 to 28698044 2 + TSS region transcription start site region 4568
Gm8484 15 28718667 to 28720086 1419 - pseudogene predicted gene 8484