Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:26685644-28575714

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa1 15 20807266 to 28493921 7686655 QTL testicular oocyte appearance 1
Fbxl7 15 26540454 to 26895564 355110 - protein coding gene F-box and leucine-rich repeat protein 7
Gm49268 15 26688400 to 26691667 3267 + unclassified gene predicted gene, 49268
9430091N11Rik 15 26696429 to 26698544 2115 unclassified gene RIKEN cDNA 9430091N11 gene
Tssr133854 15 26705750 to 26705754 4 - TSS region transcription start site region 133854
Tssr133855 15 26715354 to 26715367 13 - TSS region transcription start site region 133855
Gm6330 15 26728287 to 26729716 1429 - pseudogene predicted gene 6330
Gm49266 15 26743232 to 26746137 2905 - unclassified gene predicted gene, 49266
Tssr133856 15 26743506 to 26743519 13 - TSS region transcription start site region 133856
Tssr133857 15 26743559 to 26743570 11 - TSS region transcription start site region 133857
Tssr133858 15 26761570 to 26761575 5 - TSS region transcription start site region 133858
Gm18684 15 26775051 to 26776472 1421 + pseudogene predicted gene, 18684
Gm18093 15 26784231 to 26785059 828 + pseudogene predicted gene, 18093
Tssr133859 15 26816527 to 26816541 14 - TSS region transcription start site region 133859
Cpgi6979 15 26894771 to 26896086 1315 CpG island CpG island 6979
Tssr133860 15 26895539 to 26895558 19 - TSS region transcription start site region 133860
Tssr133861 15 26895578 to 26895585 7 - TSS region transcription start site region 133861
Tssr133862 15 26895949 to 26895967 18 - TSS region transcription start site region 133862
Tssr130878 15 26974234 to 26974241 7 + TSS region transcription start site region 130878
Tssr130879 15 27025296 to 27025298 2 + TSS region transcription start site region 130879
Gm6576 15 27025328 to 27026210 882 + pseudogene predicted gene 6576
Gm23903 15 27061736 to 27061866 130 - snoRNA gene predicted gene, 23903
Cpgi6980 15 27208278 to 27208477 199 CpG island CpG island 6980
Gm19111 15 27367939 to 27368990 1051 + pseudogene predicted gene, 19111
D15Mit94 15 27443957 to 27444106 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 94
Gm36899 15 27460088 to 27462835 2747 - lincRNA gene predicted gene, 36899
Cpgi6981 15 27466055 to 27467501 1446 CpG island CpG island 6981
Tssr130880 15 27466597 to 27466608 11 + TSS region transcription start site region 130880
Tssr130881 15 27466647 to 27466696 49 + TSS region transcription start site region 130881
Ank 15 27466677 to 27594909 128232 + protein coding gene progressive ankylosis
Tssr130882 15 27466700 to 27466721 21 + TSS region transcription start site region 130882
Tssr130883 15 27466781 to 27466798 17 + TSS region transcription start site region 130883
Tssr130884 15 27466812 to 27466828 16 + TSS region transcription start site region 130884
Tssr130885 15 27466837 to 27466862 25 + TSS region transcription start site region 130885
Cpgi6982 15 27476484 to 27476649 165 CpG island CpG island 6982
Tiaf2 15 27479006 to 27480902 1896 + unclassified gene TGF-beta1-induced anti-apoptotic factor 2
Tssr130886 15 27488261 to 27488301 40 + TSS region transcription start site region 130886
B230362B09Rik 15 27503912 to 27505532 1620 + unclassified gene RIKEN cDNA B230362B09 gene
D15Ertd30e 15 27509354 to 27509589 235 DNA segment DNA segment, Chr 15, ERATO Doi 30, expressed
Gm29901 15 27516350 to 27517352 1002 - lncRNA gene predicted gene, 29901
Tssr133863 15 27518761 to 27518767 6 - TSS region transcription start site region 133863
Tssr130887 15 27570373 to 27570376 3 + TSS region transcription start site region 130887
Tssr4566 15 27571360 to 27571368 8 + TSS region transcription start site region 4566
Tssr130888 15 27571372 to 27571394 22 + TSS region transcription start site region 130888
Tssr130889 15 27571398 to 27571417 19 + TSS region transcription start site region 130889
Mir7117 15 27571494 to 27571558 64 + miRNA gene microRNA 7117
Tssr130890 15 27571542 to 27571577 35 + TSS region transcription start site region 130890
Tssr130891 15 27571582 to 27571592 10 + TSS region transcription start site region 130891
Tssr130892 15 27571596 to 27571616 20 + TSS region transcription start site region 130892
D15Mit164.2 15 27582231 to 27582341 110 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 164.2
D15Mit164 15 27582331 to 27582471 140 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 164
D15Mit20 15 27582373 to 27582523 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 20
Otulin 15 27605917 to 27630980 25063 - protein coding gene OTU deubiquitinase with linear linkage specificity
Tssr133864 15 27619267 to 27619295 28 - TSS region transcription start site region 133864
Cpgi6983 15 27630022 to 27631186 1164 CpG island CpG island 6983
Tssr133865 15 27630644 to 27630714 70 - TSS region transcription start site region 133865
Tssr130893 15 27636477 to 27636481 4 + TSS region transcription start site region 130893
Gm46506 15 27636511 to 27636895 384 + pseudogene predicted gene, 46506
Tssr130894 15 27641471 to 27641482 11 + TSS region transcription start site region 130894
Otulinl 15 27655069 to 27681579 26510 - protein coding gene OTU deubiquitinase with linear linkage specificity like
Tssr133866 15 27661550 to 27661551 1 - TSS region transcription start site region 133866
Tssr133867 15 27663332 to 27663388 56 - TSS region transcription start site region 133867
Tssr133868 15 27663422 to 27663440 18 - TSS region transcription start site region 133868
Tssr133869 15 27663493 to 27663518 25 - TSS region transcription start site region 133869
Tssr133870 15 27663553 to 27663564 11 - TSS region transcription start site region 133870
Tssr133871 15 27663636 to 27663649 13 - TSS region transcription start site region 133871
Tssr133872 15 27664367 to 27664380 13 - TSS region transcription start site region 133872
Cpgi6984 15 27665382 to 27665760 378 CpG island CpG island 6984
Tssr133873 15 27670942 to 27670955 13 - TSS region transcription start site region 133873
C130098B18Rik 15 27677356 to 27680082 2726 unclassified gene RIKEN cDNA C130098B18 gene
Tssr133874 15 27680117 to 27680158 41 - TSS region transcription start site region 133874
Cpgi6985 15 27680704 to 27682030 1326 CpG island CpG island 6985
Tssr133875 15 27681484 to 27681495 11 - TSS region transcription start site region 133875
Tssr133876 15 27681498 to 27681554 56 - TSS region transcription start site region 133876
Tssr133877 15 27681573 to 27681584 11 - TSS region transcription start site region 133877
Tssr130895 15 27681664 to 27681676 12 + TSS region transcription start site region 130895
Tssr133878 15 27697733 to 27697746 13 - TSS region transcription start site region 133878
Tssr133879 15 27697775 to 27697794 19 - TSS region transcription start site region 133879
Trio 15 27730651 to 28025848 295197 - protein coding gene triple functional domain (PTPRF interacting)
Tssr130896 15 27741194 to 27741198 4 + TSS region transcription start site region 130896
Cpgi6986 15 27747654 to 27748121 467 CpG island CpG island 6986
Tssr133880 15 27755472 to 27755478 6 - TSS region transcription start site region 133880
Tssr133881 15 27763052 to 27763059 7 - TSS region transcription start site region 133881
Tssr130897 15 27770969 to 27770978 9 + TSS region transcription start site region 130897
Tssr130898 15 27770985 to 27770996 11 + TSS region transcription start site region 130898
Tssr130899 15 27771094 to 27771111 17 + TSS region transcription start site region 130899
Tssr133882 15 27772247 to 27772264 17 - TSS region transcription start site region 133882
Tssr133883 15 27785376 to 27785388 12 - TSS region transcription start site region 133883
Tssr133884 15 27788247 to 27788258 11 - TSS region transcription start site region 133884
Tssr133885 15 27788312 to 27788421 109 - TSS region transcription start site region 133885
Tssr133886 15 27788513 to 27788525 12 - TSS region transcription start site region 133886
Tssr133887 15 27788540 to 27788558 18 - TSS region transcription start site region 133887
Tssr133888 15 27788570 to 27788589 19 - TSS region transcription start site region 133888
Tssr133889 15 27788607 to 27788618 11 - TSS region transcription start site region 133889
Tssr130900 15 27796215 to 27796223 8 + TSS region transcription start site region 130900
Tssr130901 15 27796797 to 27796824 27 + TSS region transcription start site region 130901
Tssr130902 15 27826613 to 27826618 5 + TSS region transcription start site region 130902
Tssr133890 15 27840668 to 27840671 3 - TSS region transcription start site region 133890
Tssr4567 15 27855698 to 27855723 25 + TSS region transcription start site region 4567
Cpgi6987 15 27856131 to 27856701 570 CpG island CpG island 6987
Gm9891 15 27856307 to 27857113 806 + protein coding gene predicted gene 9891
Tssr133891 15 27856427 to 27856463 36 - TSS region transcription start site region 133891
Tssr133892 15 27856466 to 27856485 19 - TSS region transcription start site region 133892
Gm20555 15 27863799 to 27867231 3432 - unclassified gene predicted gene, 20555
Tssr133893 15 27876455 to 27876478 23 - TSS region transcription start site region 133893
Tssr133894 15 27876479 to 27876524 45 - TSS region transcription start site region 133894
Cpgi6988 15 27923660 to 27923922 262 CpG island CpG island 6988
Tssr133895 15 27923692 to 27923739 47 - TSS region transcription start site region 133895
Tssr130903 15 27924243 to 27924256 13 + TSS region transcription start site region 130903
Tssr130904 15 27924296 to 27924309 13 + TSS region transcription start site region 130904
D15Mit45 15 27967386 to 27967550 164 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 45
Tssr133896 15 27968201 to 27968212 11 - TSS region transcription start site region 133896
Tssr133897 15 27968228 to 27968240 12 - TSS region transcription start site region 133897
Tssr133898 15 27968260 to 27968267 7 - TSS region transcription start site region 133898
Tssr130905 15 27968374 to 27968384 10 + TSS region transcription start site region 130905
Gm29975 15 27970010 to 27988987 18977 - protein coding gene predicted gene, 29975
Tssr133899 15 27984779 to 27984783 4 - TSS region transcription start site region 133899
Tssr133900 15 27995320 to 27995338 18 - TSS region transcription start site region 133900
Tssr133901 15 28022187 to 28022190 3 - TSS region transcription start site region 133901
Cpgi6989 15 28023994 to 28026457 2463 CpG island CpG island 6989
Tssr133902 15 28024457 to 28024473 16 - TSS region transcription start site region 133902
Tssr133903 15 28025834 to 28025879 45 - TSS region transcription start site region 133903
Tssr133904 15 28025894 to 28025924 30 - TSS region transcription start site region 133904
Tssr133905 15 28025926 to 28025950 24 - TSS region transcription start site region 133905
Tssr133906 15 28025952 to 28025965 13 - TSS region transcription start site region 133906
Tssr133907 15 28025967 to 28025981 14 - TSS region transcription start site region 133907
Tssr133908 15 28025982 to 28026001 19 - TSS region transcription start site region 133908
Tssr133909 15 28026010 to 28026021 11 - TSS region transcription start site region 133909
Gm41280 15 28027388 to 28031152 3764 + lncRNA gene predicted gene, 41280
Gm19883 15 28041009 to 28041489 480 + pseudogene predicted gene, 19883
Gm31458 15 28045928 to 28066685 20757 - lincRNA gene predicted gene, 31458
Tssr133910 15 28058919 to 28058922 3 - TSS region transcription start site region 133910
Tssr133911 15 28066665 to 28066674 9 - TSS region transcription start site region 133911
Tssr130906 15 28081468 to 28081473 5 + TSS region transcription start site region 130906
Gm8472 15 28123259 to 28123621 362 - pseudogene predicted gene 8472
D15Mit163 15 28153198 to 28153460 262 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163
D15Mit163.2 15 28153389 to 28153506 117 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163.2
Gm49233 15 28154101 to 28155462 1361 - lincRNA gene predicted gene, 49233
Cpgi6990 15 28154820 to 28155195 375 CpG island CpG island 6990
Tssr130907 15 28154925 to 28154968 43 + TSS region transcription start site region 130907
Gm49234 15 28190894 to 28192122 1228 - unclassified gene predicted gene, 49234
Tssr130908 15 28203726 to 28203742 16 + TSS region transcription start site region 130908
Dnah5 15 28203752 to 28472052 268300 + protein coding gene dynein, axonemal, heavy chain 5
Tssr130909 15 28203799 to 28203811 12 + TSS region transcription start site region 130909
Tssr133912 15 28229877 to 28229891 14 - TSS region transcription start site region 133912
Tssr130910 15 28325850 to 28325853 3 + TSS region transcription start site region 130910
D15Mit18 15 28493790 to 28493921 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 18
Gm49278 15 28504755 to 28505191 436 - pseudogene predicted gene, 49278
Gm49279 15 28540214 to 28540471 257 - pseudogene predicted gene, 49279