Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:20787266-28513921

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389 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49685 15 20449119 to 20979940 530821 + antisense lncRNA gene predicted gene, 49685
Cdh12 15 20449265 to 21589533 1140268 + protein coding gene cadherin 12
Toa1 15 20807266 to 28493921 7686655 QTL testicular oocyte appearance 1
D15Mit130 15 20807266 to 20807449 183 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 130
D15Mit109 15 20830315 to 20830460 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 109
Tssr130776 15 20861360 to 20861361 1 + TSS region transcription start site region 130776
Gm25711 15 20908872 to 20908999 127 + snoRNA gene predicted gene, 25711
Gm27397 15 20920214 to 20920320 106 + miRNA gene predicted gene, 27397
Tssr4559 15 20931346 to 20931347 1 + TSS region transcription start site region 4559
Tssr130777 15 21035043 to 21035047 4 + TSS region transcription start site region 130777
Gm19371 15 21049389 to 21049676 287 + pseudogene predicted gene, 19371
Tssr130778 15 21097694 to 21097695 1 + TSS region transcription start site region 130778
Tssr130779 15 21111342 to 21111356 14 + TSS region transcription start site region 130779
Gm25101 15 21114369 to 21114475 106 + snRNA gene predicted gene, 25101
Gm38234 15 21180157 to 21180577 420 + unclassified gene predicted gene, 38234
Tssr130780 15 21329399 to 21329406 7 + TSS region transcription start site region 130780
Tssr130781 15 21367464 to 21367468 4 + TSS region transcription start site region 130781
Tssr130782 15 21410786 to 21410787 1 + TSS region transcription start site region 130782
Tssr130783 15 21489828 to 21489832 4 + TSS region transcription start site region 130783
Tssr130784 15 21592833 to 21592835 2 + TSS region transcription start site region 130784
Gm44373 15 21947331 to 21947499 168 - miRNA gene predicted gene, 44373
Gm49187 15 21958432 to 21959811 1379 + unclassified gene predicted gene, 49187
Gm41278 15 21998357 to 22000400 2043 - lncRNA gene predicted gene, 41278
Tssr130785 15 22018943 to 22018945 2 + TSS region transcription start site region 130785
Gm27525 15 22274070 to 22274176 106 + miRNA gene predicted gene, 27525
Elyms1 15 22472345 to 22472345 0 QTL ENU induced lymphoma susceptibility 1
D15Mit52 15 22509966 to 22510176 210 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 52
Tssr130786 15 22548906 to 22548927 21 + TSS region transcription start site region 130786
Tssr4560 15 22548939 to 22548950 11 + TSS region transcription start site region 4560
Cdh18 15 22549022 to 23474418 925396 + protein coding gene cadherin 18
Tssr130787 15 22549064 to 22549082 18 + TSS region transcription start site region 130787
D15Mit252 15 22620408 to 22620528 120 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 252
Modvl4 15 22620408 to 22620528 120 QTL modifier of vacuolated lens
Hnrnpa1l2-ps2 15 22713868 to 22714830 962 - pseudogene heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2
Tssr133810 15 22714890 to 22714891 1 - TSS region transcription start site region 133810
Tssr130788 15 22789656 to 22789681 25 + TSS region transcription start site region 130788
D15Mit200 15 22825784 to 22825925 141 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 200
D15Ertd529e 15 22896628 to 22896855 227 DNA segment DNA segment, Chr 15, ERATO Doi 529, expressed
Gm19840 15 22935487 to 22937241 1754 + pseudogene predicted gene, 19840
Tssr130789 15 23036397 to 23036408 11 + TSS region transcription start site region 130789
Tssr130790 15 23036420 to 23036441 21 + TSS region transcription start site region 130790
Tssr130791 15 23036449 to 23036492 43 + TSS region transcription start site region 130791
Tssr130792 15 23038378 to 23038386 8 + TSS region transcription start site region 130792
Tssr130793 15 23038848 to 23038852 4 + TSS region transcription start site region 130793
Gm24656 15 23154734 to 23154865 131 + snoRNA gene predicted gene, 24656
Tssr4561 15 23196635 to 23196641 6 + TSS region transcription start site region 4561
Gm49191 15 23401464 to 23414457 12993 - antisense lncRNA gene predicted gene, 49191
Tssr133811 15 23437398 to 23437425 27 - TSS region transcription start site region 133811
Cpgi6966 15 23473962 to 23474220 258 CpG island CpG island 6966
Tssr130794 15 23474454 to 23474458 4 + TSS region transcription start site region 130794
Tssr130795 15 23489867 to 23489869 2 + TSS region transcription start site region 130795
Gm6533 15 23489891 to 23490498 607 + pseudogene predicted gene 6533
Gm48915 15 23623941 to 23624200 259 - pseudogene predicted gene, 48915
Gm23980 15 23646420 to 23646577 157 - snRNA gene predicted gene, 23980
Gm48916 15 23725793 to 23729653 3860 - unclassified gene predicted gene, 48916
Gm18582 15 23851740 to 23853910 2170 - pseudogene predicted gene, 18582
D15Mit280 15 24092854 to 24093003 149 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-280
Gm48918 15 24095965 to 24099207 3242 - unclassified gene predicted gene, 48918
Gm48919 15 24129821 to 24130185 364 - pseudogene predicted gene, 48919
Gm8408 15 24203884 to 24205338 1454 - pseudogene predicted gene 8408
Gm49729 15 24254986 to 24375675 120689 - lincRNA gene predicted gene, 49729
Tssr130796 15 24255563 to 24255566 3 + TSS region transcription start site region 130796
Tssr133812 15 24306916 to 24306918 2 - TSS region transcription start site region 133812
Gm36147 15 24357462 to 24358914 1452 + pseudogene predicted gene, 36147
4930540I17Rik 15 24373610 to 24375627 2017 - unclassified gene RIKEN cDNA 4930540I17 gene
D15Mit267 15 24387795 to 24388090 295 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 267
Pgia8 15 24388090 to 3210685 -21177405 QTL proteoglycan induced arthritis 8
Gm48920 15 24605059 to 24605478 419 - pseudogene predicted gene, 48920
Tssr133813 15 24605521 to 24605526 5 - TSS region transcription start site region 133813
Gm48921 15 24650868 to 24651141 273 + pseudogene predicted gene, 48921
Gm2803 15 24724160 to 24724793 633 - pseudogene predicted gene 2803
Tssr133814 15 24724815 to 24724831 16 - TSS region transcription start site region 133814
Tssr133815 15 24724839 to 24724849 10 - TSS region transcription start site region 133815
Gm35827 15 24724917 to 24737195 12278 + lncRNA gene predicted gene, 35827
Gm22810 15 24820545 to 24820702 157 - snRNA gene predicted gene, 22810
Gm35769 15 24849672 to 24907208 57536 - lincRNA gene predicted gene, 35769
Tssr133816 15 24857530 to 24857548 18 - TSS region transcription start site region 133816
Tssr133817 15 24857566 to 24857579 13 - TSS region transcription start site region 133817
Tssr133818 15 24857660 to 24857691 31 - TSS region transcription start site region 133818
Tssr130797 15 24945482 to 24945485 3 + TSS region transcription start site region 130797
Gm2824 15 24981620 to 25027358 45738 - lincRNA gene predicted gene 2824
Tssr133819 15 25057109 to 25057113 4 - TSS region transcription start site region 133819
Gm35996 15 25101020 to 25128404 27384 - lincRNA gene predicted gene, 35996
Tssr133820 15 25135622 to 25135651 29 - TSS region transcription start site region 133820
9230109A22Rik 15 25137530 to 25238830 101300 - lincRNA gene RIKEN cDNA 9230109A22 gene
Tssr133821 15 25149072 to 25149100 28 - TSS region transcription start site region 133821
5830426I08Rik 15 25225503 to 25225854 351 - unclassified gene RIKEN cDNA 5830426I08 gene
Gm38341 15 25227517 to 25228031 514 - unclassified gene predicted gene, 38341
4930445E18Rik 15 25281439 to 25292174 10735 - lincRNA gene RIKEN cDNA 4930445E18 gene
Tssr133822 15 25332632 to 25332670 38 - TSS region transcription start site region 133822
Gm36555 15 25332667 to 25344091 11424 + lncRNA gene predicted gene, 36555
Tssr130798 15 25363275 to 25363303 28 + TSS region transcription start site region 130798
Basp1 15 25363277 to 25413764 50487 - protein coding gene brain abundant, membrane attached signal protein 1
Tssr130799 15 25363487 to 25363499 12 + TSS region transcription start site region 130799
Tssr133823 15 25363520 to 25363541 21 - TSS region transcription start site region 133823
Tssr133824 15 25363545 to 25363559 14 - TSS region transcription start site region 133824
Tssr133825 15 25363698 to 25363709 11 - TSS region transcription start site region 133825
Tssr133826 15 25363751 to 25363805 54 - TSS region transcription start site region 133826
Tssr133827 15 25363809 to 25363831 22 - TSS region transcription start site region 133827
Tssr133828 15 25363971 to 25363983 12 - TSS region transcription start site region 133828
Tssr133829 15 25363997 to 25364011 14 - TSS region transcription start site region 133829
Cpgi6967 15 25364150 to 25365074 924 CpG island CpG island 6967
Tssr133830 15 25364159 to 25364249 90 - TSS region transcription start site region 133830
Tssr133831 15 25364258 to 25364297 39 - TSS region transcription start site region 133831
Tssr130800 15 25364720 to 25364745 25 + TSS region transcription start site region 130800
Tssr133832 15 25364800 to 25364814 14 - TSS region transcription start site region 133832
Tssr130801 15 25364821 to 25364891 70 + TSS region transcription start site region 130801
Tssr133833 15 25364826 to 25364838 12 - TSS region transcription start site region 133833
Tssr133834 15 25364860 to 25364924 64 - TSS region transcription start site region 133834
Tssr133835 15 25364980 to 25364987 7 - TSS region transcription start site region 133835
Tssr133836 15 25390457 to 25390478 21 - TSS region transcription start site region 133836
Tssr133837 15 25390626 to 25390640 14 - TSS region transcription start site region 133837
Tssr133838 15 25396025 to 25396026 1 - TSS region transcription start site region 133838
Cpgi6968 15 25412367 to 25414936 2569 CpG island CpG island 6968
Tssr133839 15 25413728 to 25413745 17 - TSS region transcription start site region 133839
Tssr133840 15 25413752 to 25413773 21 - TSS region transcription start site region 133840
Tssr130802 15 25414175 to 25414197 22 + TSS region transcription start site region 130802
Gm5468 15 25414192 to 25414873 681 + lincRNA gene predicted gene 5468
Tssr130803 15 25414305 to 25414316 11 + TSS region transcription start site region 130803
Gm48956 15 25414637 to 25445640 31003 - lincRNA gene predicted gene, 48956
Gm48957 15 25415022 to 25464362 49340 + unclassified non-coding RNA gene predicted gene, 48957
Tssr4562 15 25426026 to 25426027 1 + TSS region transcription start site region 4562
Tssr133841 15 25445633 to 25445643 10 - TSS region transcription start site region 133841
D15Mit110 15 25456364 to 25456488 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 110
Gm36642 15 25528879 to 25593091 64212 - lincRNA gene predicted gene, 36642
Cpgi6969 15 25621989 to 25623493 1504 CpG island CpG island 6969
Tssr130804 15 25622525 to 25622558 33 + TSS region transcription start site region 130804
Myo10 15 25622550 to 25813671 191121 + protein coding gene myosin X
Tssr130805 15 25622566 to 25622581 15 + TSS region transcription start site region 130805
Tssr130806 15 25622747 to 25622754 7 + TSS region transcription start site region 130806
Tssr130807 15 25622759 to 25622777 18 + TSS region transcription start site region 130807
Tssr130808 15 25626182 to 25626207 25 + TSS region transcription start site region 130808
Tssr130809 15 25626221 to 25626233 12 + TSS region transcription start site region 130809
Tssr130810 15 25626417 to 25626440 23 + TSS region transcription start site region 130810
Tssr130811 15 25626449 to 25626472 23 + TSS region transcription start site region 130811
Tssr130812 15 25632332 to 25632341 9 + TSS region transcription start site region 130812
Gm48996 15 25634627 to 25638243 3616 + unclassified gene predicted gene, 48996
Tssr130813 15 25655135 to 25655166 31 + TSS region transcription start site region 130813
Tssr130814 15 25655263 to 25655272 9 + TSS region transcription start site region 130814
Gm2862 15 25681798 to 25682125 327 + pseudogene predicted gene 2862
D15Mit127 15 25686036 to 25686171 135 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 127
Tssr130815 15 25708263 to 25708268 5 + TSS region transcription start site region 130815
Cpgi6970 15 25713686 to 25714383 697 CpG island CpG island 6970
Tssr130816 15 25713870 to 25713885 15 + TSS region transcription start site region 130816
Tssr130817 15 25724811 to 25724822 11 + TSS region transcription start site region 130817
Tssr130818 15 25726627 to 25726630 3 + TSS region transcription start site region 130818
Tssr130819 15 25742314 to 25742322 8 + TSS region transcription start site region 130819
Tssr130820 15 25749953 to 25749980 27 + TSS region transcription start site region 130820
Tssr133842 15 25751611 to 25751620 9 - TSS region transcription start site region 133842
Tssr130821 15 25751787 to 25751799 12 + TSS region transcription start site region 130821
Tssr130822 15 25752860 to 25752897 37 + TSS region transcription start site region 130822
Tssr130823 15 25753198 to 25753212 14 + TSS region transcription start site region 130823
Tssr130824 15 25753230 to 25753241 11 + TSS region transcription start site region 130824
Tssr133843 15 25754006 to 25754016 10 - TSS region transcription start site region 133843
Tssr130825 15 25754784 to 25754796 12 + TSS region transcription start site region 130825
Tssr130826 15 25754821 to 25754838 17 + TSS region transcription start site region 130826
Tssr130827 15 25754871 to 25754898 27 + TSS region transcription start site region 130827
Tssr130828 15 25755243 to 25755248 5 + TSS region transcription start site region 130828
Tssr130829 15 25758755 to 25758776 21 + TSS region transcription start site region 130829
Tssr130830 15 25758779 to 25758793 14 + TSS region transcription start site region 130830
Tssr133844 15 25765077 to 25765115 38 - TSS region transcription start site region 133844
Tssr133845 15 25766584 to 25766595 11 - TSS region transcription start site region 133845
Tssr130831 15 25773985 to 25774042 57 + TSS region transcription start site region 130831
Tssr130832 15 25774072 to 25774092 20 + TSS region transcription start site region 130832
Tssr130833 15 25774191 to 25774196 5 + TSS region transcription start site region 130833
Tssr130834 15 25774240 to 25774254 14 + TSS region transcription start site region 130834
Tssr130835 15 25776383 to 25776397 14 + TSS region transcription start site region 130835
Tssr130836 15 25778119 to 25778140 21 + TSS region transcription start site region 130836
Cpgi6971 15 25779874 to 25780073 199 CpG island CpG island 6971
Tssr130837 15 25779999 to 25780033 34 + TSS region transcription start site region 130837
Cpgi6972 15 25781000 to 25781886 886 CpG island CpG island 6972
Tssr130838 15 25812713 to 25812725 12 + TSS region transcription start site region 130838
Tssr130839 15 25812823 to 25812827 4 + TSS region transcription start site region 130839
Tssr133846 15 25826459 to 25826467 8 - TSS region transcription start site region 133846
Tssr130840 15 25828772 to 25828787 15 + TSS region transcription start site region 130840
Tssr4563 15 25828818 to 25828835 17 + TSS region transcription start site region 4563
Tssr133847 15 25830517 to 25830529 12 - TSS region transcription start site region 133847
Tssr133848 15 25830547 to 25830560 13 - TSS region transcription start site region 133848
Gm4824 15 25840120 to 25840611 491 - pseudogene predicted gene 4824
Cpgi6973 15 25842830 to 25843874 1044 CpG island CpG island 6973
Tssr130841 15 25843139 to 25843188 49 + TSS region transcription start site region 130841
Tssr130842 15 25843192 to 25843241 49 + TSS region transcription start site region 130842
Tssr130843 15 25843242 to 25843249 7 + TSS region transcription start site region 130843
Tssr130844 15 25843251 to 25843262 11 + TSS region transcription start site region 130844
Tssr130845 15 25843268 to 25843280 12 + TSS region transcription start site region 130845
Tssr130846 15 25843285 to 25843345 60 + TSS region transcription start site region 130846
Retreg1 15 25843298 to 25973696 130398 + protein coding gene reticulophagy regulator 1
Tssr130847 15 25843354 to 25843361 7 + TSS region transcription start site region 130847
Tssr130848 15 25843511 to 25843542 31 + TSS region transcription start site region 130848
Tssr133849 15 25843594 to 25843635 41 - TSS region transcription start site region 133849
Cpgi6974 15 25897721 to 25897982 261 CpG island CpG island 6974
Tssr130849 15 25910067 to 25910076 9 + TSS region transcription start site region 130849
Tssr130850 15 25910352 to 25910383 31 + TSS region transcription start site region 130850
Tssr130851 15 25910464 to 25910490 26 + TSS region transcription start site region 130851
Tssr130852 15 25910498 to 25910514 16 + TSS region transcription start site region 130852
Tssr130853 15 25933546 to 25933580 34 + TSS region transcription start site region 130853
Tssr130854 15 25940696 to 25940732 36 + TSS region transcription start site region 130854
Tssr4564 15 25940800 to 25940809 9 + TSS region transcription start site region 4564
Tssr130855 15 25940832 to 25940843 11 + TSS region transcription start site region 130855
Tssr130856 15 25940846 to 25940934 88 + TSS region transcription start site region 130856