Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:12528149-13768153

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdzd2 15 12359711 to 12739924 380213 - protein coding gene PDZ domain containing 2
5033430J17Rik 15 12535526 to 12536732 1206 unclassified non-coding RNA gene RIKEN cDNA 5033430J17 gene
Tssr133778 15 12548586 to 12548595 9 - TSS region transcription start site region 133778
Tssr133779 15 12549262 to 12549285 23 - TSS region transcription start site region 133779
Tssr133780 15 12549286 to 12549296 10 - TSS region transcription start site region 133780
Tssr133781 15 12549300 to 12549305 5 - TSS region transcription start site region 133781
Cpgi6959 15 12549315 to 12549777 462 CpG island CpG island 6959
Tssr133782 15 12549346 to 12549361 15 - TSS region transcription start site region 133782
Tssr133783 15 12549898 to 12549909 11 - TSS region transcription start site region 133783
Tssr133784 15 12550050 to 12550067 17 - TSS region transcription start site region 133784
Tssr133785 15 12550187 to 12550209 22 - TSS region transcription start site region 133785
Gm24135 15 12572430 to 12572530 100 - miRNA gene predicted gene, 24135
Gm2606 15 12574889 to 12575890 1001 + pseudogene predicted pseudogene 2606
Tssr4555 15 12599054 to 12599062 8 - TSS region transcription start site region 4555
Tssr133786 15 12622333 to 12622345 12 - TSS region transcription start site region 133786
Tssr133787 15 12622403 to 12622413 10 - TSS region transcription start site region 133787
F830212C03Rik 15 12633062 to 12635346 2284 - protein coding gene RIKEN cDNA F830212C03 gene
Gm41273 15 12651354 to 12666136 14782 + lncRNA gene predicted gene, 41273
Lfibq25 15 12672707 to 13093785 421078 QTL liver fibrosis QTL 25
Tssr133788 15 12674170 to 12674186 16 - TSS region transcription start site region 133788
Tssr133789 15 12674206 to 12674217 11 - TSS region transcription start site region 133789
Tssr133790 15 12681726 to 12681729 3 - TSS region transcription start site region 133790
Gm24302 15 12695124 to 12695224 100 + miRNA gene predicted gene, 24302
Tssr133791 15 12737161 to 12737166 5 - TSS region transcription start site region 133791
Cpgi6960 15 12739158 to 12740328 1170 CpG island CpG island 6960
Tssr133792 15 12739870 to 12739906 36 - TSS region transcription start site region 133792
Tssr133793 15 12739914 to 12739942 28 - TSS region transcription start site region 133793
Tssr133794 15 12739948 to 12739961 13 - TSS region transcription start site region 133794
Gm49276 15 12757098 to 12757464 366 - pseudogene predicted gene, 49276
Gm17756 15 12765172 to 12765375 203 - pseudogene predicted gene, 17756
Gm41274 15 12798524 to 12800946 2422 + lncRNA gene predicted gene, 41274
Gm49277 15 12804782 to 12805173 391 - pseudogene predicted gene, 49277
6030458C11Rik 15 12808177 to 12824649 16472 - protein coding gene RIKEN cDNA 6030458C11 gene
Tssr133795 15 12813706 to 12813719 13 - TSS region transcription start site region 133795
Tssr133796 15 12823809 to 12823812 3 - TSS region transcription start site region 133796
Cpgi6961 15 12824218 to 12825356 1138 CpG island CpG island 6961
Tssr133797 15 12824584 to 12824604 20 - TSS region transcription start site region 133797
Tssr133798 15 12824605 to 12824654 49 - TSS region transcription start site region 133798
Tssr133799 15 12824664 to 12824675 11 - TSS region transcription start site region 133799
Drosha 15 12824815 to 12935291 110476 + protein coding gene drosha, ribonuclease type III
Tssr130744 15 12824822 to 12824833 11 + TSS region transcription start site region 130744
Tssr130745 15 12824841 to 12824883 42 + TSS region transcription start site region 130745
Tssr130746 15 12824884 to 12824907 23 + TSS region transcription start site region 130746
D15Mit199 15 12826616 to 12826740 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 199
Cpgi6962 15 12833410 to 12834201 791 CpG island CpG island 6962
Tssr130747 15 12833533 to 12833591 58 + TSS region transcription start site region 130747
Tssr130748 15 12833603 to 12833621 18 + TSS region transcription start site region 130748
Gm47288 15 12842096 to 12842235 139 + miRNA gene predicted gene, 47288
Tssr130749 15 12918392 to 12918407 15 + TSS region transcription start site region 130749
Tssr130750 15 12924005 to 12924015 10 + TSS region transcription start site region 130750
Tssr130751 15 12924045 to 12924063 18 + TSS region transcription start site region 130751
Tssr130752 15 12924064 to 12924090 26 + TSS region transcription start site region 130752
Tssr130753 15 12924092 to 12924105 13 + TSS region transcription start site region 130753
Gm49100 15 12955722 to 12960267 4545 + pseudogene predicted gene, 49100
Tssr133800 15 12962271 to 12962283 12 - TSS region transcription start site region 133800
D15Mit265a 15 12978809 to 12979006 197 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 265a
D15Mit265b 15 12978809 to 12978923 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 265b
uwl 15 12979006 to 3460212 -9518794 heritable phenotypic marker underwhite-like
Gm24664 15 12980829 to 12980928 99 + rRNA gene predicted gene, 24664
Cdh6 15 13028701 to 13173675 144974 - protein coding gene cadherin 6
B130021B11Rik 15 13029646 to 13033813 4167 unclassified gene RIKEN cDNA B130021B11 gene
Gm35018 15 13092017 to 13094568 2551 + lncRNA gene predicted gene, 35018
Tssr133801 15 13132923 to 13132929 6 - TSS region transcription start site region 133801
Tssr133802 15 13148149 to 13148153 4 - TSS region transcription start site region 133802
Gm46513 15 13149264 to 13169977 20713 + lncRNA gene predicted gene, 46513
Tssr130754 15 13155227 to 13155238 11 + TSS region transcription start site region 130754
Tssr130755 15 13155242 to 13155247 5 + TSS region transcription start site region 130755
Cpgi6963 15 13172341 to 13172784 443 CpG island CpG island 6963
Cpgi6964 15 13173030 to 13173558 528 CpG island CpG island 6964
Tssr133803 15 13173586 to 13173602 16 - TSS region transcription start site region 133803
Tssr133804 15 13173607 to 13173644 37 - TSS region transcription start site region 133804
Tssr133805 15 13173650 to 13173658 8 - TSS region transcription start site region 133805
Tssr133806 15 13173660 to 13173706 46 - TSS region transcription start site region 133806
D15Mit53 15 13280455 to 13280591 136 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 53
Gm46517 15 13287334 to 13306975 19641 + lncRNA gene predicted gene, 46517
Gm8238 15 13418422 to 13418856 434 - pseudogene predicted gene 8238
Cpgi6965 15 13418665 to 13418887 222 CpG island CpG island 6965
Gm4940 15 13452316 to 13453109 793 + pseudogene predicted gene 4940
Tssr130756 15 13481325 to 13481328 3 + TSS region transcription start site region 130756
Gm49112 15 13481349 to 13481637 288 + pseudogene predicted gene, 49112
D15Mit179 15 13489923 to 13490069 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 179
D15Mit162 15 13579189 to 13579530 341 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 162
D15Mit162.1 15 13579416 to 13579558 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 162.1
Gm18714 15 13713972 to 13714241 269 - pseudogene predicted gene, 18714
Gm49113 15 13754781 to 13761027 6246 - lincRNA gene predicted gene, 49113