Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:11961425-12681460

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34618 15 11955357 to 11964083 8726 - lncRNA gene predicted gene, 34618
Gm21997 15 11963984 to 11964864 880 + pseudogene predicted gene 21997
Gm24074 15 11965330 to 11965589 259 + unclassified non-coding RNA gene predicted gene, 24074
Tssr130709 15 11967058 to 11967114 56 + TSS region transcription start site region 130709
1700047G03Rik 15 11967062 to 11970083 3021 + lincRNA gene RIKEN cDNA 1700047G03 gene
Tssr130710 15 11971308 to 11971311 3 + TSS region transcription start site region 130710
Sub1 15 11981336 to 11996035 14699 - protein coding gene SUB1 homolog, transcriptional regulator
Tssr133757 15 11987691 to 11987695 4 - TSS region transcription start site region 133757
Tssr133758 15 11991016 to 11991050 34 - TSS region transcription start site region 133758
Cpgi6952 15 11995260 to 11996358 1098 CpG island CpG island 6952
Tssr133759 15 11995998 to 11996014 16 - TSS region transcription start site region 133759
Tssr133760 15 11996944 to 11996962 18 - TSS region transcription start site region 133760
Tssr133761 15 12010064 to 12010067 3 - TSS region transcription start site region 133761
Cpgi6953 15 12010503 to 12010894 391 CpG island CpG island 6953
Tssr133762 15 12010801 to 12010811 10 - TSS region transcription start site region 133762
Tssr133763 15 12010871 to 12010882 11 - TSS region transcription start site region 133763
Gm2559 15 12031565 to 12031927 362 - pseudogene predicted gene 2559
Tssr133764 15 12032589 to 12032633 44 - TSS region transcription start site region 133764
Gm34759 15 12068149 to 12080472 12323 - lincRNA gene predicted gene, 34759
Cpgi6954 15 12106189 to 12106472 283 CpG island CpG island 6954
Tssr133765 15 12106903 to 12106910 7 - TSS region transcription start site region 133765
Cpgi6955 15 12117238 to 12119113 1875 CpG island CpG island 6955
Tssr130711 15 12117584 to 12117612 28 + TSS region transcription start site region 130711
Zfr 15 12117720 to 12185449 67729 + protein coding gene zinc finger RNA binding protein
Tssr130712 15 12117782 to 12117795 13 + TSS region transcription start site region 130712
Tssr130713 15 12117813 to 12117846 33 + TSS region transcription start site region 130713
Tssr130714 15 12117848 to 12117905 57 + TSS region transcription start site region 130714
Tssr130715 15 12118032 to 12118074 42 + TSS region transcription start site region 130715
9330115C17Rik 15 12120032 to 12121428 1396 unclassified gene RIKEN cDNA 9330115C17 gene
Tssr130716 15 12122858 to 12122860 2 + TSS region transcription start site region 130716
Tssr130717 15 12129505 to 12129511 6 + TSS region transcription start site region 130717
Tssr130718 15 12136569 to 12136588 19 + TSS region transcription start site region 130718
Tssr133766 15 12136663 to 12136684 21 - TSS region transcription start site region 133766
Tssr133767 15 12137923 to 12137937 14 - TSS region transcription start site region 133767
Tssr130719 15 12146157 to 12146201 44 + TSS region transcription start site region 130719
Tssr130720 15 12146275 to 12146286 11 + TSS region transcription start site region 130720
Tssr130721 15 12149312 to 12149315 3 + TSS region transcription start site region 130721
Gm25713 15 12158333 to 12158441 108 - snRNA gene predicted gene, 25713
Mir1898 15 12171492 to 12171574 82 + miRNA gene microRNA 1898
Tssr130722 15 12179652 to 12179664 12 + TSS region transcription start site region 130722
Tssr130723 15 12179719 to 12179735 16 + TSS region transcription start site region 130723
Gm2573 15 12181147 to 12181464 317 + protein coding gene predicted gene 2573
Gm49240 15 12194907 to 12196619 1712 - lincRNA gene predicted gene, 49240
Tssr133768 15 12196607 to 12196612 5 - TSS region transcription start site region 133768
Gm2581 15 12198302 to 12198472 170 - pseudogene predicted gene 2581
D15Mit275 15 12204387 to 12204530 143 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-275
Cpgi6956 15 12204642 to 12205819 1177 CpG island CpG island 6956
Mtmr12 15 12205004 to 12272240 67236 + protein coding gene myotubularin related protein 12
Tssr130724 15 12205009 to 12205040 31 + TSS region transcription start site region 130724
Tssr130725 15 12205049 to 12205064 15 + TSS region transcription start site region 130725
Tssr130726 15 12205068 to 12205119 51 + TSS region transcription start site region 130726
Tssr130727 15 12205130 to 12205153 23 + TSS region transcription start site region 130727
Tssr130728 15 12215188 to 12215219 31 + TSS region transcription start site region 130728
D15Mit1006 15 12218182 to 12218313 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1006
D15Mit1005 15 12218318 to 12218422 104 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1005
Tssr130729 15 12230434 to 12230443 9 + TSS region transcription start site region 130729
Tssr130730 15 12230481 to 12230484 3 + TSS region transcription start site region 130730
Tssr130731 15 12234327 to 12234328 1 + TSS region transcription start site region 130731
Tssr130732 15 12240454 to 12240458 4 + TSS region transcription start site region 130732
Tssr130733 15 12248800 to 12248804 4 + TSS region transcription start site region 130733
D15Mit51 15 12280730 to 12280851 121 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 51
Gm46497 15 12286669 to 12287453 784 + pseudogene predicted gene, 46497
Cpgi6957 15 12320932 to 12322377 1445 CpG island CpG island 6957
Tssr133769 15 12321313 to 12321324 11 - TSS region transcription start site region 133769
Tssr130734 15 12321425 to 12321460 35 + TSS region transcription start site region 130734
1810049J17Rik 15 12321438 to 12321899 461 - protein coding gene RIKEN cDNA 1810049J17 gene
Golph3 15 12321450 to 12351591 30141 + protein coding gene golgi phosphoprotein 3
Tssr130735 15 12321472 to 12321491 19 + TSS region transcription start site region 130735
Tssr130736 15 12321509 to 12321520 11 + TSS region transcription start site region 130736
Tssr130737 15 12321534 to 12321547 13 + TSS region transcription start site region 130737
Tssr130738 15 12321616 to 12321625 9 + TSS region transcription start site region 130738
Tssr130739 15 12349940 to 12349970 30 + TSS region transcription start site region 130739
Tssr130740 15 12350079 to 12350091 12 + TSS region transcription start site region 130740
Tssr130741 15 12350178 to 12350191 13 + TSS region transcription start site region 130741
Tssr130742 15 12350217 to 12350237 20 + TSS region transcription start site region 130742
Tssr130743 15 12350656 to 12350676 20 + TSS region transcription start site region 130743
D15Ertd136e 15 12355124 to 12355328 204 DNA segment DNA segment, Chr 15, ERATO Doi 136, expressed
Pdzd2 15 12359711 to 12739924 380213 - protein coding gene PDZ domain containing 2
Cpgi6958 15 12375088 to 12375578 490 CpG island CpG island 6958
Tssr133770 15 12397477 to 12397481 4 - TSS region transcription start site region 133770
D15Mit176 15 12402117 to 12402266 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 176
D15Mit177 15 12402143 to 12402259 116 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 177
Tssr133771 15 12419545 to 12419591 46 - TSS region transcription start site region 133771
Tssr133772 15 12419592 to 12419603 11 - TSS region transcription start site region 133772
Tssr133773 15 12419630 to 12419643 13 - TSS region transcription start site region 133773
Tssr133774 15 12424795 to 12424799 4 - TSS region transcription start site region 133774
Tssr133775 15 12491848 to 12491853 5 - TSS region transcription start site region 133775
Tssr133776 15 12493489 to 12493533 44 - TSS region transcription start site region 133776
Tssr133777 15 12514675 to 12514684 9 - TSS region transcription start site region 133777
5033430J17Rik 15 12535526 to 12536732 1206 unclassified non-coding RNA gene RIKEN cDNA 5033430J17 gene
Tssr133778 15 12548586 to 12548595 9 - TSS region transcription start site region 133778
Tssr133779 15 12549262 to 12549285 23 - TSS region transcription start site region 133779
Tssr133780 15 12549286 to 12549296 10 - TSS region transcription start site region 133780
Tssr133781 15 12549300 to 12549305 5 - TSS region transcription start site region 133781
Cpgi6959 15 12549315 to 12549777 462 CpG island CpG island 6959
Tssr133782 15 12549346 to 12549361 15 - TSS region transcription start site region 133782
Tssr133783 15 12549898 to 12549909 11 - TSS region transcription start site region 133783
Tssr133784 15 12550050 to 12550067 17 - TSS region transcription start site region 133784
Tssr133785 15 12550187 to 12550209 22 - TSS region transcription start site region 133785
Gm24135 15 12572430 to 12572530 100 - miRNA gene predicted gene, 24135
Gm2606 15 12574889 to 12575890 1001 + pseudogene predicted pseudogene 2606
Tssr4555 15 12599054 to 12599062 8 - TSS region transcription start site region 4555
Tssr133786 15 12622333 to 12622345 12 - TSS region transcription start site region 133786
Tssr133787 15 12622403 to 12622413 10 - TSS region transcription start site region 133787
F830212C03Rik 15 12633062 to 12635346 2284 - protein coding gene RIKEN cDNA F830212C03 gene
Gm41273 15 12651354 to 12666136 14782 + lncRNA gene predicted gene, 41273
Lfibq25 15 12672707 to 13093785 421078 QTL liver fibrosis QTL 25
Tssr133788 15 12674170 to 12674186 16 - TSS region transcription start site region 133788
Tssr133789 15 12674206 to 12674217 11 - TSS region transcription start site region 133789
Hyplip2 15 102988123 to 12402117 -90586006 QTL hyperlipidemia 2