Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:10404605-15244654

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287 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Agxt2 15 10358532 to 10410153 51621 + protein coding gene alanine-glyoxylate aminotransferase 2
Dnajc21 15 10446763 to 10470519 23756 - protein coding gene DnaJ heat shock protein family (Hsp40) member C21
Tssr133721 15 10454807 to 10454841 34 - TSS region transcription start site region 133721
Tssr133722 15 10461990 to 10461998 8 - TSS region transcription start site region 133722
Cpgi6942 15 10469774 to 10470862 1088 CpG island CpG island 6942
Tssr133723 15 10470490 to 10470527 37 - TSS region transcription start site region 133723
Tssr133724 15 10470530 to 10470605 75 - TSS region transcription start site region 133724
Tssr130691 15 10470676 to 10470726 50 + TSS region transcription start site region 130691
Brix1 15 10474779 to 10485937 11158 - protein coding gene BRX1, biogenesis of ribosomes
Tssr133725 15 10482786 to 10482791 5 - TSS region transcription start site region 133725
Tssr133726 15 10485418 to 10485422 4 - TSS region transcription start site region 133726
Cpgi6943 15 10485636 to 10486638 1002 CpG island CpG island 6943
Tssr133727 15 10485890 to 10485951 61 - TSS region transcription start site region 133727
Tssr133728 15 10485956 to 10485967 11 - TSS region transcription start site region 133728
Tssr130692 15 10486008 to 10486077 69 + TSS region transcription start site region 130692
Rad1 15 10486018 to 10499063 13045 + protein coding gene RAD1 checkpoint DNA exonuclease
Tssr130693 15 10486094 to 10486105 11 + TSS region transcription start site region 130693
Tssr133729 15 10496277 to 10496290 13 - TSS region transcription start site region 133729
Ttc23l 15 10500102 to 10558668 58566 - protein coding gene tetratricopeptide repeat domain 23-like
Gm17044 15 10525623 to 10526881 1258 - pseudogene predicted gene 17044
Tssr133730 15 10558636 to 10558641 5 - TSS region transcription start site region 133730
Tssr133731 15 10558644 to 10558697 53 - TSS region transcription start site region 133731
Gm8174 15 10560524 to 10561524 1000 - pseudogene predicted gene 8174
Rai14 15 10568969 to 10714624 145655 - protein coding gene retinoic acid induced 14
Tssr133732 15 10589031 to 10589068 37 - TSS region transcription start site region 133732
Tssr133733 15 10589160 to 10589176 16 - TSS region transcription start site region 133733
Tssr133734 15 10589286 to 10589298 12 - TSS region transcription start site region 133734
Gm10389 15 10600293 to 10611651 11358 + antisense lncRNA gene predicted gene 10389
D15Mit10 15 10688608 to 10688829 221 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 10
Tssr133735 15 10713537 to 10713544 7 - TSS region transcription start site region 133735
Tssr133736 15 10713552 to 10713570 18 - TSS region transcription start site region 133736
Tssr130694 15 10713677 to 10713686 9 + TSS region transcription start site region 130694
Cpgi6944 15 10713761 to 10715070 1309 CpG island CpG island 6944
Tssr133737 15 10714579 to 10714610 31 - TSS region transcription start site region 133737
Tssr133738 15 10714612 to 10714637 25 - TSS region transcription start site region 133738
Tssr133739 15 10714692 to 10714792 100 - TSS region transcription start site region 133739
Tssr133740 15 10714798 to 10714816 18 - TSS region transcription start site region 133740
4930556M19Rik 15 10714836 to 10790123 75287 + lncRNA gene RIKEN cDNA 4930556M19 gene
Tssr130695 15 10714839 to 10714881 42 + TSS region transcription start site region 130695
Tssr133741 15 10715298 to 10715315 17 - TSS region transcription start site region 133741
Tssr130696 15 10717579 to 10717583 4 + TSS region transcription start site region 130696
Tssr133742 15 10720250 to 10720255 5 - TSS region transcription start site region 133742
Tssr133743 15 10720303 to 10720324 21 - TSS region transcription start site region 133743
Tssr133744 15 10720342 to 10720343 1 - TSS region transcription start site region 133744
Tssr133745 15 10723539 to 10723561 22 - TSS region transcription start site region 133745
Tssr130697 15 10723914 to 10723956 42 + TSS region transcription start site region 130697
Tssr133746 15 10771373 to 10771386 13 - TSS region transcription start site region 133746
D15Mit225 15 10799829 to 10799906 77 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 225
Gm19276 15 10829051 to 10832713 3662 + lincRNA gene predicted gene, 19276
Gm29742 15 10917437 to 10917821 384 + pseudogene predicted gene, 29742
Gm49068 15 10938122 to 10938544 422 + pseudogene predicted gene, 49068
Gm34315 15 10949648 to 10981650 32002 - lncRNA gene predicted gene, 34315
Tssr130698 15 10952203 to 10952214 11 + TSS region transcription start site region 130698
C1qtnf3 15 10952332 to 10980150 27818 + protein coding gene C1q and tumor necrosis factor related protein 3
Tssr130699 15 10952348 to 10952364 16 + TSS region transcription start site region 130699
Cpgi6945 15 10952383 to 10952605 222 CpG island CpG island 6945
Cpgi6946 15 10981341 to 10982146 805 CpG island CpG island 6946
Tssr130700 15 10981747 to 10981765 18 + TSS region transcription start site region 130700
Amacr 15 10981756 to 10996624 14868 + protein coding gene alpha-methylacyl-CoA racemase
Tssr130701 15 10981780 to 10981805 25 + TSS region transcription start site region 130701
Tssr130702 15 10992369 to 10992370 1 + TSS region transcription start site region 130702
Tssr4552 15 10996428 to 10996431 3 + TSS region transcription start site region 4552
Tssr130703 15 11000716 to 11000736 20 + TSS region transcription start site region 130703
Slc45a2 15 11000721 to 11029233 28512 + protein coding gene solute carrier family 45, member 2
Tssr130704 15 11000748 to 11000763 15 + TSS region transcription start site region 130704
Cpgi6947 15 11027764 to 11028018 254 CpG island CpG island 6947
Rxfp3 15 11033717 to 11037968 4251 - protein coding gene relaxin family peptide receptor 3
Cpgi6948 15 11035853 to 11038036 2183 CpG island CpG island 6948
Tssr130705 15 11064764 to 11064797 33 + TSS region transcription start site region 130705
Adamts12 15 11064790 to 11346867 282077 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
Tssr130706 15 11064801 to 11064823 22 + TSS region transcription start site region 130706
Tssr130707 15 11064863 to 11064877 14 + TSS region transcription start site region 130707
Tssr130708 15 11076330 to 11076333 3 + TSS region transcription start site region 130708
Tssr4553 15 11334759 to 11334765 6 + TSS region transcription start site region 4553
Gm34444 15 11359975 to 11367060 7085 - lncRNA gene predicted gene, 34444
Gm24844 15 11361611 to 11361737 126 - snoRNA gene predicted gene, 24844
Tars 15 11383663 to 11399658 15995 - protein coding gene threonyl-tRNA synthetase
Cpgi6949 15 11399388 to 11399964 576 CpG island CpG island 6949
Tssr133747 15 11399552 to 11399559 7 - TSS region transcription start site region 133747
Tssr133748 15 11399580 to 11399593 13 - TSS region transcription start site region 133748
Tssr133749 15 11399594 to 11399674 80 - TSS region transcription start site region 133749
Tssr133750 15 11399676 to 11399683 7 - TSS region transcription start site region 133750
Gm49106 15 11625097 to 11630746 5649 - lincRNA gene predicted gene, 49106
Gm49107 15 11630729 to 11638325 7596 + lincRNA gene predicted gene, 49107
Gm41271 15 11696810 to 11703703 6893 - lncRNA gene predicted gene, 41271
Gm41272 15 11709377 to 11715373 5996 - lncRNA gene predicted gene, 41272
Tssr133751 15 11720558 to 11720564 6 - TSS region transcription start site region 133751
Gm34501 15 11725754 to 11729618 3864 - lncRNA gene predicted gene, 34501
Tssr4554 15 11762916 to 11762918 2 + TSS region transcription start site region 4554
Npr3 15 11839896 to 11907287 67391 - protein coding gene natriuretic peptide receptor 3
Cpgi6950 15 11903705 to 11905765 2060 CpG island CpG island 6950
Tssr133752 15 11905609 to 11905623 14 - TSS region transcription start site region 133752
Cpgi6951 15 11906060 to 11907037 977 CpG island CpG island 6951
Tssr133753 15 11906098 to 11906115 17 - TSS region transcription start site region 133753
Tssr133754 15 11906156 to 11906182 26 - TSS region transcription start site region 133754
Tssr133755 15 11906184 to 11906202 18 - TSS region transcription start site region 133755
Gm5144 15 11906525 to 11907390 865 + bidirectional promoter lncRNA gene predicted gene 5144
Tssr133756 15 11907184 to 11907227 43 - TSS region transcription start site region 133756
Gm34618 15 11955357 to 11964083 8726 - lncRNA gene predicted gene, 34618
Gm21997 15 11963984 to 11964864 880 + pseudogene predicted gene 21997
Gm24074 15 11965330 to 11965589 259 + unclassified non-coding RNA gene predicted gene, 24074
Tssr130709 15 11967058 to 11967114 56 + TSS region transcription start site region 130709
1700047G03Rik 15 11967062 to 11970083 3021 + lincRNA gene RIKEN cDNA 1700047G03 gene
Tssr130710 15 11971308 to 11971311 3 + TSS region transcription start site region 130710
Sub1 15 11981336 to 11996035 14699 - protein coding gene SUB1 homolog, transcriptional regulator
Tssr133757 15 11987691 to 11987695 4 - TSS region transcription start site region 133757
Tssr133758 15 11991016 to 11991050 34 - TSS region transcription start site region 133758
Cpgi6952 15 11995260 to 11996358 1098 CpG island CpG island 6952
Tssr133759 15 11995998 to 11996014 16 - TSS region transcription start site region 133759
Tssr133760 15 11996944 to 11996962 18 - TSS region transcription start site region 133760
Tssr133761 15 12010064 to 12010067 3 - TSS region transcription start site region 133761
Cpgi6953 15 12010503 to 12010894 391 CpG island CpG island 6953
Tssr133762 15 12010801 to 12010811 10 - TSS region transcription start site region 133762
Tssr133763 15 12010871 to 12010882 11 - TSS region transcription start site region 133763
Gm2559 15 12031565 to 12031927 362 - pseudogene predicted gene 2559
Tssr133764 15 12032589 to 12032633 44 - TSS region transcription start site region 133764
Gm34759 15 12068149 to 12080472 12323 - lincRNA gene predicted gene, 34759
Cpgi6954 15 12106189 to 12106472 283 CpG island CpG island 6954
Tssr133765 15 12106903 to 12106910 7 - TSS region transcription start site region 133765
Cpgi6955 15 12117238 to 12119113 1875 CpG island CpG island 6955
Tssr130711 15 12117584 to 12117612 28 + TSS region transcription start site region 130711
Zfr 15 12117720 to 12185449 67729 + protein coding gene zinc finger RNA binding protein
Tssr130712 15 12117782 to 12117795 13 + TSS region transcription start site region 130712
Tssr130713 15 12117813 to 12117846 33 + TSS region transcription start site region 130713
Tssr130714 15 12117848 to 12117905 57 + TSS region transcription start site region 130714
Tssr130715 15 12118032 to 12118074 42 + TSS region transcription start site region 130715
9330115C17Rik 15 12120032 to 12121428 1396 unclassified gene RIKEN cDNA 9330115C17 gene
Tssr130716 15 12122858 to 12122860 2 + TSS region transcription start site region 130716
Tssr130717 15 12129505 to 12129511 6 + TSS region transcription start site region 130717
Tssr130718 15 12136569 to 12136588 19 + TSS region transcription start site region 130718
Tssr133766 15 12136663 to 12136684 21 - TSS region transcription start site region 133766
Tssr133767 15 12137923 to 12137937 14 - TSS region transcription start site region 133767
Tssr130719 15 12146157 to 12146201 44 + TSS region transcription start site region 130719
Tssr130720 15 12146275 to 12146286 11 + TSS region transcription start site region 130720
Tssr130721 15 12149312 to 12149315 3 + TSS region transcription start site region 130721
Gm25713 15 12158333 to 12158441 108 - snRNA gene predicted gene, 25713
Mir1898 15 12171492 to 12171574 82 + miRNA gene microRNA 1898
Tssr130722 15 12179652 to 12179664 12 + TSS region transcription start site region 130722
Tssr130723 15 12179719 to 12179735 16 + TSS region transcription start site region 130723
Gm2573 15 12181147 to 12181464 317 + protein coding gene predicted gene 2573
Gm49240 15 12194907 to 12196619 1712 - lincRNA gene predicted gene, 49240
Tssr133768 15 12196607 to 12196612 5 - TSS region transcription start site region 133768
Gm2581 15 12198302 to 12198472 170 - pseudogene predicted gene 2581
D15Mit275 15 12204387 to 12204530 143 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-275
Cpgi6956 15 12204642 to 12205819 1177 CpG island CpG island 6956
Mtmr12 15 12205004 to 12272240 67236 + protein coding gene myotubularin related protein 12
Tssr130724 15 12205009 to 12205040 31 + TSS region transcription start site region 130724
Tssr130725 15 12205049 to 12205064 15 + TSS region transcription start site region 130725
Tssr130726 15 12205068 to 12205119 51 + TSS region transcription start site region 130726
Tssr130727 15 12205130 to 12205153 23 + TSS region transcription start site region 130727
Tssr130728 15 12215188 to 12215219 31 + TSS region transcription start site region 130728
D15Mit1006 15 12218182 to 12218313 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1006
D15Mit1005 15 12218318 to 12218422 104 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1005
Tssr130729 15 12230434 to 12230443 9 + TSS region transcription start site region 130729
Tssr130730 15 12230481 to 12230484 3 + TSS region transcription start site region 130730
Tssr130731 15 12234327 to 12234328 1 + TSS region transcription start site region 130731
Tssr130732 15 12240454 to 12240458 4 + TSS region transcription start site region 130732
Tssr130733 15 12248800 to 12248804 4 + TSS region transcription start site region 130733
D15Mit51 15 12280730 to 12280851 121 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 51
Gm46497 15 12286669 to 12287453 784 + pseudogene predicted gene, 46497
Cpgi6957 15 12320932 to 12322377 1445 CpG island CpG island 6957
Tssr133769 15 12321313 to 12321324 11 - TSS region transcription start site region 133769
Tssr130734 15 12321425 to 12321460 35 + TSS region transcription start site region 130734
1810049J17Rik 15 12321438 to 12321899 461 - protein coding gene RIKEN cDNA 1810049J17 gene
Golph3 15 12321450 to 12351591 30141 + protein coding gene golgi phosphoprotein 3
Tssr130735 15 12321472 to 12321491 19 + TSS region transcription start site region 130735
Tssr130736 15 12321509 to 12321520 11 + TSS region transcription start site region 130736
Tssr130737 15 12321534 to 12321547 13 + TSS region transcription start site region 130737
Tssr130738 15 12321616 to 12321625 9 + TSS region transcription start site region 130738
Tssr130739 15 12349940 to 12349970 30 + TSS region transcription start site region 130739
Tssr130740 15 12350079 to 12350091 12 + TSS region transcription start site region 130740
Tssr130741 15 12350178 to 12350191 13 + TSS region transcription start site region 130741
Tssr130742 15 12350217 to 12350237 20 + TSS region transcription start site region 130742
Tssr130743 15 12350656 to 12350676 20 + TSS region transcription start site region 130743
D15Ertd136e 15 12355124 to 12355328 204 DNA segment DNA segment, Chr 15, ERATO Doi 136, expressed
Pdzd2 15 12359711 to 12739924 380213 - protein coding gene PDZ domain containing 2
Cpgi6958 15 12375088 to 12375578 490 CpG island CpG island 6958
Tssr133770 15 12397477 to 12397481 4 - TSS region transcription start site region 133770
D15Mit176 15 12402117 to 12402266 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 176
D15Mit177 15 12402143 to 12402259 116 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 177
Tssr133771 15 12419545 to 12419591 46 - TSS region transcription start site region 133771
Tssr133772 15 12419592 to 12419603 11 - TSS region transcription start site region 133772
Tssr133773 15 12419630 to 12419643 13 - TSS region transcription start site region 133773
Tssr133774 15 12424795 to 12424799 4 - TSS region transcription start site region 133774
Tssr133775 15 12491848 to 12491853 5 - TSS region transcription start site region 133775
Tssr133776 15 12493489 to 12493533 44 - TSS region transcription start site region 133776
Tssr133777 15 12514675 to 12514684 9 - TSS region transcription start site region 133777
5033430J17Rik 15 12535526 to 12536732 1206 unclassified non-coding RNA gene RIKEN cDNA 5033430J17 gene
Tssr133778 15 12548586 to 12548595 9 - TSS region transcription start site region 133778
Tssr133779 15 12549262 to 12549285 23 - TSS region transcription start site region 133779
Tssr133780 15 12549286 to 12549296 10 - TSS region transcription start site region 133780
Tssr133781 15 12549300 to 12549305 5 - TSS region transcription start site region 133781
Cpgi6959 15 12549315 to 12549777 462 CpG island CpG island 6959
Tssr133782 15 12549346 to 12549361 15 - TSS region transcription start site region 133782
Tssr133783 15 12549898 to 12549909 11 - TSS region transcription start site region 133783
Tssr133784 15 12550050 to 12550067 17 - TSS region transcription start site region 133784
Tssr133785 15 12550187 to 12550209 22 - TSS region transcription start site region 133785
Gm24135 15 12572430 to 12572530 100 - miRNA gene predicted gene, 24135
Gm2606 15 12574889 to 12575890 1001 + pseudogene predicted pseudogene 2606
Tssr4555 15 12599054 to 12599062 8 - TSS region transcription start site region 4555