Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:103005797-103265808

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hoxc6 15 102998257 to 103011881 13624 + protein coding gene homeobox C6
Tssr133502 15 103009481 to 103009507 26 + TSS region transcription start site region 133502
Tssr133503 15 103009517 to 103009544 27 + TSS region transcription start site region 133503
Tssr133504 15 103009545 to 103009558 13 + TSS region transcription start site region 133504
Cpgi7861 15 103009655 to 103009854 199 CpG island CpG island 7861
Tssr133505 15 103010127 to 103010140 13 + TSS region transcription start site region 133505
Cpgi7862 15 103010615 to 103010897 282 CpG island CpG island 7862
Tssr133506 15 103014000 to 103014014 14 + TSS region transcription start site region 133506
Hoxc5 15 103014008 to 103017429 3421 + protein coding gene homeobox C5
Tssr133507 15 103014129 to 103014145 16 + TSS region transcription start site region 133507
Cpgi7863 15 103014156 to 103014589 433 CpG island CpG island 7863
Tssr4743 15 103014337 to 103014368 31 + TSS region transcription start site region 4743
Tssr133508 15 103014370 to 103014389 19 + TSS region transcription start site region 133508
Cpgi7864 15 103014852 to 103015336 484 CpG island CpG island 7864
Mir615 15 103014910 to 103015001 91 + miRNA gene microRNA 615
Hoxc4 15 103018934 to 103036852 17918 + protein coding gene homeobox C4
Tssr133509 15 103018964 to 103018973 9 + TSS region transcription start site region 133509
Gm30528 15 103026807 to 103063780 36973 - lncRNA gene predicted gene, 30528
Cpgi7865 15 103027474 to 103027814 340 CpG island CpG island 7865
Cpgi7866 15 103034600 to 103035109 509 CpG island CpG island 7866
Tssr133510 15 103034617 to 103034642 25 + TSS region transcription start site region 133510
Tssr133511 15 103034657 to 103034676 19 + TSS region transcription start site region 133511
Tssr133512 15 103034700 to 103034720 20 + TSS region transcription start site region 133512
Cpgi7867 15 103035556 to 103035988 432 CpG island CpG island 7867
Cpgi7868 15 103041022 to 103041376 354 CpG island CpG island 7868
5730585A16Rik 15 103058280 to 103059306 1026 - protein coding gene RIKEN cDNA 5730585A16 gene
Cpgi7869 15 103060565 to 103061061 496 CpG island CpG island 7869
Cpgi7870 15 103061542 to 103061785 243 CpG island CpG island 7870
Cpgi7871 15 103069170 to 103069526 356 CpG island CpG island 7871
Cpgi7872 15 103085807 to 103086751 944 CpG island CpG island 7872
Gm28876 15 103096151 to 103102111 5960 - lincRNA gene predicted gene 28876
Tssr136721 15 103097784 to 103097787 3 - TSS region transcription start site region 136721
Tssr136722 15 103101964 to 103101970 6 - TSS region transcription start site region 136722
Tssr136723 15 103102101 to 103102117 16 - TSS region transcription start site region 136723
Tssr133513 15 103102215 to 103102228 13 + TSS region transcription start site region 133513
Gm10830 15 103102237 to 103105069 2832 + lincRNA gene predicted gene 10830
Gm28265 15 103102284 to 103104602 2318 - lincRNA gene predicted gene 28265
Cpgi7873 15 103102394 to 103102631 237 CpG island CpG island 7873
D930007P13Rik 15 103123070 to 103146828 23758 - lincRNA gene Riken cDNA D930007P13 gene
Tssr133514 15 103135797 to 103135808 11 + TSS region transcription start site region 133514
Tssr133515 15 103135814 to 103135827 13 + TSS region transcription start site region 133515
Tssr133516 15 103135830 to 103135845 15 + TSS region transcription start site region 133516
Gm49477 15 103135881 to 103140669 4788 + lincRNA gene predicted gene, 49477
Cpgi7874 15 103146365 to 103147474 1109 CpG island CpG island 7874
Smug1 15 103153290 to 103167092 13802 - protein coding gene single-strand selective monofunctional uracil DNA glycosylase
Cpgi7875 15 103155809 to 103156091 282 CpG island CpG island 7875
D15Mit160 15 103162729 to 103162875 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 160
Cpgi7876 15 103163233 to 103163417 184 CpG island CpG island 7876
Tssr136724 15 103163294 to 103163336 42 - TSS region transcription start site region 136724
Tssr136725 15 103168029 to 103168046 17 - TSS region transcription start site region 136725
Cpgi7877 15 103168631 to 103169584 953 CpG island CpG island 7877
Cpgi7878 15 103170008 to 103170515 507 CpG island CpG island 7878
Cpgi7879 15 103182098 to 103182876 778 CpG island CpG island 7879
Cpgi7880 15 103183026 to 103184230 1204 CpG island CpG island 7880
Cbx5 15 103191544 to 103239816 48272 - protein coding gene chromobox 5
Tssr136726 15 103193380 to 103193384 4 - TSS region transcription start site region 136726
Tssr136727 15 103196805 to 103196824 19 - TSS region transcription start site region 136727
Tssr136728 15 103199622 to 103199637 15 - TSS region transcription start site region 136728
Tssr136729 15 103213236 to 103213252 16 - TSS region transcription start site region 136729
Tssr136730 15 103215118 to 103215136 18 - TSS region transcription start site region 136730
Tssr136731 15 103215285 to 103215361 76 - TSS region transcription start site region 136731
Tssr136732 15 103216261 to 103216285 24 - TSS region transcription start site region 136732
A630065K11Rik 15 103231957 to 103234051 2094 unclassified gene RIKEN cDNA A630065K11 gene
Cpgi7881 15 103239221 to 103240971 1750 CpG island CpG island 7881
Tssr136733 15 103239797 to 103239806 9 - TSS region transcription start site region 136733
Tssr136734 15 103239812 to 103239888 76 - TSS region transcription start site region 136734
Tssr133517 15 103239947 to 103239993 46 + TSS region transcription start site region 133517
Tssr133518 15 103240021 to 103240070 49 + TSS region transcription start site region 133518
Tssr133519 15 103240405 to 103240429 24 + TSS region transcription start site region 133519
Hnrnpa1 15 103240432 to 103246692 6260 + protein coding gene heterogeneous nuclear ribonucleoprotein A1
Tssr133520 15 103240442 to 103240453 11 + TSS region transcription start site region 133520
Tssr136735 15 103240748 to 103240758 10 - TSS region transcription start site region 136735
Tssr133521 15 103244003 to 103244019 16 + TSS region transcription start site region 133521
Tssr4744 15 103245586 to 103245593 7 + TSS region transcription start site region 4744
Nfe2 15 103248212 to 103258403 10191 - protein coding gene nuclear factor, erythroid derived 2
Tssr136736 15 103249321 to 103249343 22 - TSS region transcription start site region 136736
Tssr136737 15 103251055 to 103251071 16 - TSS region transcription start site region 136737
Tssr136738 15 103251647 to 103251654 7 - TSS region transcription start site region 136738
Tssr136739 15 103251657 to 103251705 48 - TSS region transcription start site region 136739
Tssr136740 15 103252768 to 103252784 16 - TSS region transcription start site region 136740
Tssr136741 15 103252814 to 103252829 15 - TSS region transcription start site region 136741
Tssr133522 15 103253016 to 103253025 9 + TSS region transcription start site region 133522
Tssr136742 15 103253497 to 103253501 4 - TSS region transcription start site region 136742
Cpgi7882 15 103255051 to 103255498 447 CpG island CpG island 7882
Tssr136743 15 103255229 to 103255250 21 - TSS region transcription start site region 136743
Tssr136744 15 103255259 to 103255279 20 - TSS region transcription start site region 136744
Tssr136745 15 103255371 to 103255386 15 - TSS region transcription start site region 136745
Tssr136746 15 103255390 to 103255397 7 - TSS region transcription start site region 136746
Tssr136747 15 103255427 to 103255432 5 - TSS region transcription start site region 136747
Tssr136748 15 103255433 to 103255445 12 - TSS region transcription start site region 136748
Tssr136749 15 103260140 to 103260187 47 - TSS region transcription start site region 136749