Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102971535-103661540

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291 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hoxc10 15 102966796 to 102971893 5097 + protein coding gene homeobox C10
Tssr133482 15 102972229 to 102972235 6 + TSS region transcription start site region 133482
Cpgi7851 15 102972346 to 102972691 345 CpG island CpG island 7851
Mir196a-2 15 102973350 to 102973434 84 + miRNA gene microRNA 196a-2
Cpgi7852 15 102975705 to 102977670 1965 CpG island CpG island 7852
Gm4200 15 102976255 to 102978186 1931 protein coding gene predicted gene 4200
Hoxc9 15 102977032 to 102984444 7412 + protein coding gene homeobox C9
Tssr136719 15 102977463 to 102977478 15 - TSS region transcription start site region 136719
Cpgi7853 15 102978921 to 102979092 171 CpG island CpG island 7853
Tssr136720 15 102979296 to 102979329 33 - TSS region transcription start site region 136720
Gm36878 15 102980480 to 102981242 762 - lncRNA gene predicted gene, 36878
Cpgi7854 15 102981172 to 102982593 1421 CpG island CpG island 7854
Tssr133483 15 102981582 to 102981598 16 + TSS region transcription start site region 133483
Tssr133484 15 102981604 to 102981641 37 + TSS region transcription start site region 133484
Tssr133485 15 102982097 to 102982118 21 + TSS region transcription start site region 133485
Gm29852 15 102986689 to 102990306 3617 - lncRNA gene predicted gene, 29852
D15Mit16.1 15 102987916 to 102988038 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.1
Bmca 15 102988005 to 102988123 118 QTL bile mucin accumulation
D15Mit16 15 102988005 to 102988123 118 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16
Sluc34a 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34a
Sluc34b 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34b
D15Mit16.2 15 102988108 to 102988222 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.2
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6
Hyplip2 15 102988123 to 12402117 -90586006 QTL hyperlipidemia 2
Sluc34 15 102988123 to 97987052 -5001071 QTL susceptibility to lung cancer 34
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough
Tssr133486 15 102988290 to 102988291 1 + TSS region transcription start site region 133486
Cpgi7855 15 102990089 to 102991328 1239 CpG island CpG island 7855
Tssr133487 15 102990481 to 102990492 11 + TSS region transcription start site region 133487
Tssr133488 15 102990515 to 102990530 15 + TSS region transcription start site region 133488
Tssr133489 15 102990533 to 102990575 42 + TSS region transcription start site region 133489
Tssr133490 15 102990576 to 102990590 14 + TSS region transcription start site region 133490
Hoxc8 15 102990607 to 102994111 3504 + protein coding gene homeobox C8
Tssr133491 15 102990863 to 102990882 19 + TSS region transcription start site region 133491
Tssr133492 15 102990908 to 102990909 1 + TSS region transcription start site region 133492
Tssr133493 15 102990915 to 102990925 10 + TSS region transcription start site region 133493
Tssr133494 15 102990935 to 102990940 5 + TSS region transcription start site region 133494
Tssr133495 15 102990949 to 102990952 3 + TSS region transcription start site region 133495
Tssr133496 15 102990972 to 102990986 14 + TSS region transcription start site region 133496
Tssr133497 15 102990994 to 102991000 6 + TSS region transcription start site region 133497
Tssr133498 15 102991004 to 102991009 5 + TSS region transcription start site region 133498
Tssr133499 15 102991158 to 102991176 18 + TSS region transcription start site region 133499
D15Mit15 15 102993114 to 102993272 158 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 15
Skull22 15 102993114 to 102993272 158 QTL skull morphology 22
Epfpq3 15 102993272 to 78716903 -24276369 QTL epididymal fat percentage QTL 3
W3q6 15 102993272 to 78716903 -24276369 QTL weight 3 weeks QTL 6
Cpgi7856 15 102995818 to 102996040 222 CpG island CpG island 7856
Gm29905 15 102997332 to 102998135 803 - lncRNA gene predicted gene, 29905
Cpgi7857 15 102998058 to 102998268 210 CpG island CpG island 7857
Tssr133500 15 102998211 to 102998222 11 + TSS region transcription start site region 133500
Tssr133501 15 102998227 to 102998247 20 + TSS region transcription start site region 133501
Hoxc6 15 102998257 to 103011881 13624 + protein coding gene homeobox C6
Cpgi7858 15 102998959 to 102999631 672 CpG island CpG island 7858
Cpgi7859 15 103000581 to 103000925 344 CpG island CpG island 7859
Cpgi7860 15 103005440 to 103005671 231 CpG island CpG island 7860
Tssr133502 15 103009481 to 103009507 26 + TSS region transcription start site region 133502
Tssr133503 15 103009517 to 103009544 27 + TSS region transcription start site region 133503
Tssr133504 15 103009545 to 103009558 13 + TSS region transcription start site region 133504
Cpgi7861 15 103009655 to 103009854 199 CpG island CpG island 7861
Tssr133505 15 103010127 to 103010140 13 + TSS region transcription start site region 133505
Cpgi7862 15 103010615 to 103010897 282 CpG island CpG island 7862
Tssr133506 15 103014000 to 103014014 14 + TSS region transcription start site region 133506
Hoxc5 15 103014008 to 103017429 3421 + protein coding gene homeobox C5
Tssr133507 15 103014129 to 103014145 16 + TSS region transcription start site region 133507
Cpgi7863 15 103014156 to 103014589 433 CpG island CpG island 7863
Tssr4743 15 103014337 to 103014368 31 + TSS region transcription start site region 4743
Tssr133508 15 103014370 to 103014389 19 + TSS region transcription start site region 133508
Cpgi7864 15 103014852 to 103015336 484 CpG island CpG island 7864
Mir615 15 103014910 to 103015001 91 + miRNA gene microRNA 615
Hoxc4 15 103018934 to 103036852 17918 + protein coding gene homeobox C4
Tssr133509 15 103018964 to 103018973 9 + TSS region transcription start site region 133509
Gm30528 15 103026807 to 103063780 36973 - lncRNA gene predicted gene, 30528
Cpgi7865 15 103027474 to 103027814 340 CpG island CpG island 7865
Cpgi7866 15 103034600 to 103035109 509 CpG island CpG island 7866
Tssr133510 15 103034617 to 103034642 25 + TSS region transcription start site region 133510
Tssr133511 15 103034657 to 103034676 19 + TSS region transcription start site region 133511
Tssr133512 15 103034700 to 103034720 20 + TSS region transcription start site region 133512
Cpgi7867 15 103035556 to 103035988 432 CpG island CpG island 7867
Cpgi7868 15 103041022 to 103041376 354 CpG island CpG island 7868
5730585A16Rik 15 103058280 to 103059306 1026 - protein coding gene RIKEN cDNA 5730585A16 gene
Cpgi7869 15 103060565 to 103061061 496 CpG island CpG island 7869
Cpgi7870 15 103061542 to 103061785 243 CpG island CpG island 7870
Cpgi7871 15 103069170 to 103069526 356 CpG island CpG island 7871
Cpgi7872 15 103085807 to 103086751 944 CpG island CpG island 7872
Gm28876 15 103096151 to 103102111 5960 - lincRNA gene predicted gene 28876
Tssr136721 15 103097784 to 103097787 3 - TSS region transcription start site region 136721
Tssr136722 15 103101964 to 103101970 6 - TSS region transcription start site region 136722
Tssr136723 15 103102101 to 103102117 16 - TSS region transcription start site region 136723
Tssr133513 15 103102215 to 103102228 13 + TSS region transcription start site region 133513
Gm10830 15 103102237 to 103105069 2832 + lincRNA gene predicted gene 10830
Gm28265 15 103102284 to 103104602 2318 - lincRNA gene predicted gene 28265
Cpgi7873 15 103102394 to 103102631 237 CpG island CpG island 7873
D930007P13Rik 15 103123070 to 103146828 23758 - lincRNA gene Riken cDNA D930007P13 gene
Tssr133514 15 103135797 to 103135808 11 + TSS region transcription start site region 133514
Tssr133515 15 103135814 to 103135827 13 + TSS region transcription start site region 133515
Tssr133516 15 103135830 to 103135845 15 + TSS region transcription start site region 133516
Gm49477 15 103135881 to 103140669 4788 + lincRNA gene predicted gene, 49477
Cpgi7874 15 103146365 to 103147474 1109 CpG island CpG island 7874
Smug1 15 103153290 to 103167092 13802 - protein coding gene single-strand selective monofunctional uracil DNA glycosylase
Cpgi7875 15 103155809 to 103156091 282 CpG island CpG island 7875
D15Mit160 15 103162729 to 103162875 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 160
Cpgi7876 15 103163233 to 103163417 184 CpG island CpG island 7876
Tssr136724 15 103163294 to 103163336 42 - TSS region transcription start site region 136724
Tssr136725 15 103168029 to 103168046 17 - TSS region transcription start site region 136725
Cpgi7877 15 103168631 to 103169584 953 CpG island CpG island 7877
Cpgi7878 15 103170008 to 103170515 507 CpG island CpG island 7878
Cpgi7879 15 103182098 to 103182876 778 CpG island CpG island 7879
Cpgi7880 15 103183026 to 103184230 1204 CpG island CpG island 7880
Cbx5 15 103191544 to 103239816 48272 - protein coding gene chromobox 5
Tssr136726 15 103193380 to 103193384 4 - TSS region transcription start site region 136726
Tssr136727 15 103196805 to 103196824 19 - TSS region transcription start site region 136727
Tssr136728 15 103199622 to 103199637 15 - TSS region transcription start site region 136728
Tssr136729 15 103213236 to 103213252 16 - TSS region transcription start site region 136729
Tssr136730 15 103215118 to 103215136 18 - TSS region transcription start site region 136730
Tssr136731 15 103215285 to 103215361 76 - TSS region transcription start site region 136731
Tssr136732 15 103216261 to 103216285 24 - TSS region transcription start site region 136732
A630065K11Rik 15 103231957 to 103234051 2094 unclassified gene RIKEN cDNA A630065K11 gene
Cpgi7881 15 103239221 to 103240971 1750 CpG island CpG island 7881
Tssr136733 15 103239797 to 103239806 9 - TSS region transcription start site region 136733
Tssr136734 15 103239812 to 103239888 76 - TSS region transcription start site region 136734
Tssr133517 15 103239947 to 103239993 46 + TSS region transcription start site region 133517
Tssr133518 15 103240021 to 103240070 49 + TSS region transcription start site region 133518
Tssr133519 15 103240405 to 103240429 24 + TSS region transcription start site region 133519
Hnrnpa1 15 103240432 to 103246692 6260 + protein coding gene heterogeneous nuclear ribonucleoprotein A1
Tssr133520 15 103240442 to 103240453 11 + TSS region transcription start site region 133520
Tssr136735 15 103240748 to 103240758 10 - TSS region transcription start site region 136735
Tssr133521 15 103244003 to 103244019 16 + TSS region transcription start site region 133521
Tssr4744 15 103245586 to 103245593 7 + TSS region transcription start site region 4744
Nfe2 15 103248212 to 103258403 10191 - protein coding gene nuclear factor, erythroid derived 2
Tssr136736 15 103249321 to 103249343 22 - TSS region transcription start site region 136736
Tssr136737 15 103251055 to 103251071 16 - TSS region transcription start site region 136737
Tssr136738 15 103251647 to 103251654 7 - TSS region transcription start site region 136738
Tssr136739 15 103251657 to 103251705 48 - TSS region transcription start site region 136739
Tssr136740 15 103252768 to 103252784 16 - TSS region transcription start site region 136740
Tssr136741 15 103252814 to 103252829 15 - TSS region transcription start site region 136741
Tssr133522 15 103253016 to 103253025 9 + TSS region transcription start site region 133522
Tssr136742 15 103253497 to 103253501 4 - TSS region transcription start site region 136742
Cpgi7882 15 103255051 to 103255498 447 CpG island CpG island 7882
Tssr136743 15 103255229 to 103255250 21 - TSS region transcription start site region 136743
Tssr136744 15 103255259 to 103255279 20 - TSS region transcription start site region 136744
Tssr136745 15 103255371 to 103255386 15 - TSS region transcription start site region 136745
Tssr136746 15 103255390 to 103255397 7 - TSS region transcription start site region 136746
Tssr136747 15 103255427 to 103255432 5 - TSS region transcription start site region 136747
Tssr136748 15 103255433 to 103255445 12 - TSS region transcription start site region 136748
Tssr136749 15 103260140 to 103260187 47 - TSS region transcription start site region 136749
Cpgi7883 15 103272560 to 103273149 589 CpG island CpG island 7883
Copz1 15 103272834 to 103299869 27035 + protein coding gene coatomer protein complex, subunit zeta 1
Tssr133523 15 103272888 to 103272892 4 + TSS region transcription start site region 133523
Tssr133524 15 103272893 to 103272907 14 + TSS region transcription start site region 133524
Tssr133525 15 103273805 to 103273808 3 + TSS region transcription start site region 133525
Tssr133526 15 103282047 to 103282051 4 + TSS region transcription start site region 133526
Mir148b 15 103285125 to 103285221 96 + miRNA gene microRNA 148b
Gm41406 15 103285701 to 103290490 4789 - lncRNA gene predicted gene, 41406
Tssr133527 15 103293404 to 103293406 2 + TSS region transcription start site region 133527
Tssr133528 15 103296725 to 103296759 34 + TSS region transcription start site region 133528
Tssr133529 15 103297880 to 103297900 20 + TSS region transcription start site region 133529
Tssr133530 15 103298663 to 103298669 6 + TSS region transcription start site region 133530
Tssr133531 15 103298785 to 103298808 23 + TSS region transcription start site region 133531
Tssr133532 15 103298869 to 103298888 19 + TSS region transcription start site region 133532
Tssr133533 15 103298930 to 103298972 42 + TSS region transcription start site region 133533
Tssr133534 15 103299354 to 103299388 34 + TSS region transcription start site region 133534
Cpgi7884 15 103300152 to 103300373 221 CpG island CpG island 7884
Gm49482 15 103301065 to 103309077 8012 + antisense lncRNA gene predicted gene, 49482
Cpgi7885 15 103304713 to 103305734 1021 CpG island CpG island 7885
Tssr133535 15 103305443 to 103305449 6 + TSS region transcription start site region 133535
Gpr84 15 103308235 to 103310612 2377 - protein coding gene G protein-coupled receptor 84
Tssr133536 15 103308367 to 103308406 39 + TSS region transcription start site region 133536
Cpgi7886 15 103308443 to 103309509 1066 CpG island CpG island 7886
Tssr136750 15 103310402 to 103310413 11 - TSS region transcription start site region 136750
Tssr136751 15 103310425 to 103310444 19 - TSS region transcription start site region 136751
Tssr136752 15 103310448 to 103310476 28 - TSS region transcription start site region 136752
Zfp385a 15 103313895 to 103340086 26191 - protein coding gene zinc finger protein 385A
Cpgi7887 15 103313996 to 103314547 551 CpG island CpG island 7887
Tssr136753 15 103314741 to 103314754 13 - TSS region transcription start site region 136753
Tssr136754 15 103314876 to 103314899 23 - TSS region transcription start site region 136754
Tssr136755 15 103314957 to 103314983 26 - TSS region transcription start site region 136755
Cpgi7888 15 103314971 to 103315236 265 CpG island CpG island 7888
Tssr136756 15 103314996 to 103315023 27 - TSS region transcription start site region 136756
Tssr136757 15 103315072 to 103315084 12 - TSS region transcription start site region 136757
Tssr136758 15 103315997 to 103316017 20 - TSS region transcription start site region 136758
Tssr136759 15 103316535 to 103316540 5 - TSS region transcription start site region 136759
Tssr136760 15 103318262 to 103318274 12 - TSS region transcription start site region 136760
Tssr136761 15 103319606 to 103319612 6 - TSS region transcription start site region 136761
Tssr136762 15 103319723 to 103319726 3 - TSS region transcription start site region 136762
Cpgi7889 15 103322890 to 103323833 943 CpG island CpG island 7889
Tssr136763 15 103323217 to 103323267 50 - TSS region transcription start site region 136763
Tssr136764 15 103323429 to 103323446 17 - TSS region transcription start site region 136764
Tssr136765 15 103323495 to 103323566 71 - TSS region transcription start site region 136765
Tssr136766 15 103333355 to 103333390 35 - TSS region transcription start site region 136766
Tssr136767 15 103333810 to 103333836 26 - TSS region transcription start site region 136767
Tssr136768 15 103334271 to 103334347 76 - TSS region transcription start site region 136768
Tssr133537 15 103335779 to 103335781 2 + TSS region transcription start site region 133537
Cpgi7890 15 103339795 to 103340187 392 CpG island CpG island 7890
Tssr136769 15 103340085 to 103340100 15 - TSS region transcription start site region 136769
Tssr136770 15 103340102 to 103340125 23 - TSS region transcription start site region 136770
Tssr136771 15 103340130 to 103340141 11 - TSS region transcription start site region 136771
Itga5 15 103344286 to 103366763 22477 - protein coding gene integrin alpha 5 (fibronectin receptor alpha)
Tssr136772 15 103344558 to 103344574 16 - TSS region transcription start site region 136772
Tssr136773 15 103344638 to 103344656 18 - TSS region transcription start site region 136773
Tssr136774 15 103344712 to 103344724 12 - TSS region transcription start site region 136774