Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102880118-103550136

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304 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr133469 15 102889867 to 102889868 1 + TSS region transcription start site region 133469
Cpgi7834 15 102910177 to 102910591 414 CpG island CpG island 7834
Cpgi7835 15 102913087 to 102913350 263 CpG island CpG island 7835
Cpgi7836 15 102918470 to 102918621 151 CpG island CpG island 7836
Cpgi7837 15 102920790 to 102922290 1500 CpG island CpG island 7837
Tssr133470 15 102921121 to 102921132 11 + TSS region transcription start site region 133470
Hoxc13 15 102921131 to 102928814 7683 + protein coding gene homeobox C13
Tssr133471 15 102921137 to 102921142 5 + TSS region transcription start site region 133471
Tssr133472 15 102921147 to 102921169 22 + TSS region transcription start site region 133472
Tssr133473 15 102921172 to 102921199 27 + TSS region transcription start site region 133473
Cpgi7838 15 102927053 to 102927518 465 CpG island CpG island 7838
Tssr133474 15 102928086 to 102928092 6 + TSS region transcription start site region 133474
Tssr4741 15 102928154 to 102928200 46 + TSS region transcription start site region 4741
Cpgi7839 15 102931887 to 102932042 155 CpG island CpG island 7839
Cpgi7840 15 102934530 to 102934711 181 CpG island CpG island 7840
Gm36820 15 102934805 to 102936471 1666 - lncRNA gene predicted gene, 36820
Cpgi7841 15 102934934 to 102935283 349 CpG island CpG island 7841
Cpgi7842 15 102936662 to 102937542 880 CpG island CpG island 7842
Tssr133475 15 102936816 to 102936834 18 + TSS region transcription start site region 133475
Tssr133476 15 102936842 to 102936854 12 + TSS region transcription start site region 133476
Hoxc12 15 102936853 to 102938517 1664 + protein coding gene homeobox C12
Cpgi7843 15 102938189 to 102938508 319 CpG island CpG island 7843
Cpgi7844 15 102939447 to 102939829 382 CpG island CpG island 7844
Cpgi7845 15 102942704 to 102943510 806 CpG island CpG island 7845
Hotair 15 102944062 to 102947730 3668 - lincRNA gene HOX transcript antisense RNA (non-protein coding)
Gm27337 15 102945359 to 102945427 68 + unclassified non-coding RNA gene predicted gene, 27337
Gm27443 15 102947496 to 102947593 97 + unclassified non-coding RNA gene predicted gene, 27443
Gm28011 15 102949434 to 102949608 174 + unclassified non-coding RNA gene predicted gene, 28011
Cpgi7846 15 102949725 to 102950051 326 CpG island CpG island 7846
Gm27535 15 102949776 to 102949932 156 + unclassified non-coding RNA gene predicted gene, 27535
Cpgi7847 15 102954301 to 102955336 1035 CpG island CpG island 7847
Tssr4742 15 102954473 to 102954496 23 + TSS region transcription start site region 4742
Hoxc11 15 102954526 to 102956701 2175 + protein coding gene homeobox C11
Cpgi7848 15 102955749 to 102956597 848 CpG island CpG island 7848
Cpgi7849 15 102963706 to 102964067 361 CpG island CpG island 7849
Cpgi7850 15 102966441 to 102967915 1474 CpG island CpG island 7850
Tssr133477 15 102966739 to 102966751 12 + TSS region transcription start site region 133477
Tssr133478 15 102966752 to 102966774 22 + TSS region transcription start site region 133478
Tssr133479 15 102966794 to 102966812 18 + TSS region transcription start site region 133479
Hoxc10 15 102966796 to 102971893 5097 + protein coding gene homeobox C10
Tssr133480 15 102966857 to 102966871 14 + TSS region transcription start site region 133480
Tssr133481 15 102971436 to 102971474 38 + TSS region transcription start site region 133481
Tssr133482 15 102972229 to 102972235 6 + TSS region transcription start site region 133482
Cpgi7851 15 102972346 to 102972691 345 CpG island CpG island 7851
Mir196a-2 15 102973350 to 102973434 84 + miRNA gene microRNA 196a-2
Cpgi7852 15 102975705 to 102977670 1965 CpG island CpG island 7852
Gm4200 15 102976255 to 102978186 1931 protein coding gene predicted gene 4200
Hoxc9 15 102977032 to 102984444 7412 + protein coding gene homeobox C9
Tssr136719 15 102977463 to 102977478 15 - TSS region transcription start site region 136719
Cpgi7853 15 102978921 to 102979092 171 CpG island CpG island 7853
Tssr136720 15 102979296 to 102979329 33 - TSS region transcription start site region 136720
Gm36878 15 102980480 to 102981242 762 - lncRNA gene predicted gene, 36878
Cpgi7854 15 102981172 to 102982593 1421 CpG island CpG island 7854
Tssr133483 15 102981582 to 102981598 16 + TSS region transcription start site region 133483
Tssr133484 15 102981604 to 102981641 37 + TSS region transcription start site region 133484
Tssr133485 15 102982097 to 102982118 21 + TSS region transcription start site region 133485
Gm29852 15 102986689 to 102990306 3617 - lncRNA gene predicted gene, 29852
D15Mit16.1 15 102987916 to 102988038 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.1
D15Mit16 15 102988005 to 102988123 118 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16
Bmca 15 102988005 to 102988123 118 QTL bile mucin accumulation
Sluc34b 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34b
Sluc34a 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34a
D15Mit16.2 15 102988108 to 102988222 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.2
Sluc34 15 102988123 to 97987052 -5001071 QTL susceptibility to lung cancer 34
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough
Hyplip2 15 102988123 to 12402117 -90586006 QTL hyperlipidemia 2
Tssr133486 15 102988290 to 102988291 1 + TSS region transcription start site region 133486
Cpgi7855 15 102990089 to 102991328 1239 CpG island CpG island 7855
Tssr133487 15 102990481 to 102990492 11 + TSS region transcription start site region 133487
Tssr133488 15 102990515 to 102990530 15 + TSS region transcription start site region 133488
Tssr133489 15 102990533 to 102990575 42 + TSS region transcription start site region 133489
Tssr133490 15 102990576 to 102990590 14 + TSS region transcription start site region 133490
Hoxc8 15 102990607 to 102994111 3504 + protein coding gene homeobox C8
Tssr133491 15 102990863 to 102990882 19 + TSS region transcription start site region 133491
Tssr133492 15 102990908 to 102990909 1 + TSS region transcription start site region 133492
Tssr133493 15 102990915 to 102990925 10 + TSS region transcription start site region 133493
Tssr133494 15 102990935 to 102990940 5 + TSS region transcription start site region 133494
Tssr133495 15 102990949 to 102990952 3 + TSS region transcription start site region 133495
Tssr133496 15 102990972 to 102990986 14 + TSS region transcription start site region 133496
Tssr133497 15 102990994 to 102991000 6 + TSS region transcription start site region 133497
Tssr133498 15 102991004 to 102991009 5 + TSS region transcription start site region 133498
Tssr133499 15 102991158 to 102991176 18 + TSS region transcription start site region 133499
Skull22 15 102993114 to 102993272 158 QTL skull morphology 22
D15Mit15 15 102993114 to 102993272 158 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 15
Epfpq3 15 102993272 to 78716903 -24276369 QTL epididymal fat percentage QTL 3
W3q6 15 102993272 to 78716903 -24276369 QTL weight 3 weeks QTL 6
Cpgi7856 15 102995818 to 102996040 222 CpG island CpG island 7856
Gm29905 15 102997332 to 102998135 803 - lncRNA gene predicted gene, 29905
Cpgi7857 15 102998058 to 102998268 210 CpG island CpG island 7857
Tssr133500 15 102998211 to 102998222 11 + TSS region transcription start site region 133500
Tssr133501 15 102998227 to 102998247 20 + TSS region transcription start site region 133501
Hoxc6 15 102998257 to 103011881 13624 + protein coding gene homeobox C6
Cpgi7858 15 102998959 to 102999631 672 CpG island CpG island 7858
Cpgi7859 15 103000581 to 103000925 344 CpG island CpG island 7859
Cpgi7860 15 103005440 to 103005671 231 CpG island CpG island 7860
Tssr133502 15 103009481 to 103009507 26 + TSS region transcription start site region 133502
Tssr133503 15 103009517 to 103009544 27 + TSS region transcription start site region 133503
Tssr133504 15 103009545 to 103009558 13 + TSS region transcription start site region 133504
Cpgi7861 15 103009655 to 103009854 199 CpG island CpG island 7861
Tssr133505 15 103010127 to 103010140 13 + TSS region transcription start site region 133505
Cpgi7862 15 103010615 to 103010897 282 CpG island CpG island 7862
Tssr133506 15 103014000 to 103014014 14 + TSS region transcription start site region 133506
Hoxc5 15 103014008 to 103017429 3421 + protein coding gene homeobox C5
Tssr133507 15 103014129 to 103014145 16 + TSS region transcription start site region 133507
Cpgi7863 15 103014156 to 103014589 433 CpG island CpG island 7863
Tssr4743 15 103014337 to 103014368 31 + TSS region transcription start site region 4743
Tssr133508 15 103014370 to 103014389 19 + TSS region transcription start site region 133508
Cpgi7864 15 103014852 to 103015336 484 CpG island CpG island 7864
Mir615 15 103014910 to 103015001 91 + miRNA gene microRNA 615
Hoxc4 15 103018934 to 103036852 17918 + protein coding gene homeobox C4
Tssr133509 15 103018964 to 103018973 9 + TSS region transcription start site region 133509
Gm30528 15 103026807 to 103063780 36973 - lncRNA gene predicted gene, 30528
Cpgi7865 15 103027474 to 103027814 340 CpG island CpG island 7865
Cpgi7866 15 103034600 to 103035109 509 CpG island CpG island 7866
Tssr133510 15 103034617 to 103034642 25 + TSS region transcription start site region 133510
Tssr133511 15 103034657 to 103034676 19 + TSS region transcription start site region 133511
Tssr133512 15 103034700 to 103034720 20 + TSS region transcription start site region 133512
Cpgi7867 15 103035556 to 103035988 432 CpG island CpG island 7867
Cpgi7868 15 103041022 to 103041376 354 CpG island CpG island 7868
5730585A16Rik 15 103058280 to 103059306 1026 - protein coding gene RIKEN cDNA 5730585A16 gene
Cpgi7869 15 103060565 to 103061061 496 CpG island CpG island 7869
Cpgi7870 15 103061542 to 103061785 243 CpG island CpG island 7870
Cpgi7871 15 103069170 to 103069526 356 CpG island CpG island 7871
Cpgi7872 15 103085807 to 103086751 944 CpG island CpG island 7872
Gm28876 15 103096151 to 103102111 5960 - lincRNA gene predicted gene 28876
Tssr136721 15 103097784 to 103097787 3 - TSS region transcription start site region 136721
Tssr136722 15 103101964 to 103101970 6 - TSS region transcription start site region 136722
Tssr136723 15 103102101 to 103102117 16 - TSS region transcription start site region 136723
Tssr133513 15 103102215 to 103102228 13 + TSS region transcription start site region 133513
Gm10830 15 103102237 to 103105069 2832 + lincRNA gene predicted gene 10830
Gm28265 15 103102284 to 103104602 2318 - lincRNA gene predicted gene 28265
Cpgi7873 15 103102394 to 103102631 237 CpG island CpG island 7873
D930007P13Rik 15 103123070 to 103146828 23758 - lincRNA gene Riken cDNA D930007P13 gene
Tssr133514 15 103135797 to 103135808 11 + TSS region transcription start site region 133514
Tssr133515 15 103135814 to 103135827 13 + TSS region transcription start site region 133515
Tssr133516 15 103135830 to 103135845 15 + TSS region transcription start site region 133516
Gm49477 15 103135881 to 103140669 4788 + lincRNA gene predicted gene, 49477
Cpgi7874 15 103146365 to 103147474 1109 CpG island CpG island 7874
Smug1 15 103153290 to 103167092 13802 - protein coding gene single-strand selective monofunctional uracil DNA glycosylase
Cpgi7875 15 103155809 to 103156091 282 CpG island CpG island 7875
D15Mit160 15 103162729 to 103162875 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 160
Cpgi7876 15 103163233 to 103163417 184 CpG island CpG island 7876
Tssr136724 15 103163294 to 103163336 42 - TSS region transcription start site region 136724
Tssr136725 15 103168029 to 103168046 17 - TSS region transcription start site region 136725
Cpgi7877 15 103168631 to 103169584 953 CpG island CpG island 7877
Cpgi7878 15 103170008 to 103170515 507 CpG island CpG island 7878
Cpgi7879 15 103182098 to 103182876 778 CpG island CpG island 7879
Cpgi7880 15 103183026 to 103184230 1204 CpG island CpG island 7880
Cbx5 15 103191544 to 103239816 48272 - protein coding gene chromobox 5
Tssr136726 15 103193380 to 103193384 4 - TSS region transcription start site region 136726
Tssr136727 15 103196805 to 103196824 19 - TSS region transcription start site region 136727
Tssr136728 15 103199622 to 103199637 15 - TSS region transcription start site region 136728
Tssr136729 15 103213236 to 103213252 16 - TSS region transcription start site region 136729
Tssr136730 15 103215118 to 103215136 18 - TSS region transcription start site region 136730
Tssr136731 15 103215285 to 103215361 76 - TSS region transcription start site region 136731
Tssr136732 15 103216261 to 103216285 24 - TSS region transcription start site region 136732
A630065K11Rik 15 103231957 to 103234051 2094 unclassified gene RIKEN cDNA A630065K11 gene
Cpgi7881 15 103239221 to 103240971 1750 CpG island CpG island 7881
Tssr136733 15 103239797 to 103239806 9 - TSS region transcription start site region 136733
Tssr136734 15 103239812 to 103239888 76 - TSS region transcription start site region 136734
Tssr133517 15 103239947 to 103239993 46 + TSS region transcription start site region 133517
Tssr133518 15 103240021 to 103240070 49 + TSS region transcription start site region 133518
Tssr133519 15 103240405 to 103240429 24 + TSS region transcription start site region 133519
Hnrnpa1 15 103240432 to 103246692 6260 + protein coding gene heterogeneous nuclear ribonucleoprotein A1
Tssr133520 15 103240442 to 103240453 11 + TSS region transcription start site region 133520
Tssr136735 15 103240748 to 103240758 10 - TSS region transcription start site region 136735
Tssr133521 15 103244003 to 103244019 16 + TSS region transcription start site region 133521
Tssr4744 15 103245586 to 103245593 7 + TSS region transcription start site region 4744
Nfe2 15 103248212 to 103258403 10191 - protein coding gene nuclear factor, erythroid derived 2
Tssr136736 15 103249321 to 103249343 22 - TSS region transcription start site region 136736
Tssr136737 15 103251055 to 103251071 16 - TSS region transcription start site region 136737
Tssr136738 15 103251647 to 103251654 7 - TSS region transcription start site region 136738
Tssr136739 15 103251657 to 103251705 48 - TSS region transcription start site region 136739
Tssr136740 15 103252768 to 103252784 16 - TSS region transcription start site region 136740
Tssr136741 15 103252814 to 103252829 15 - TSS region transcription start site region 136741
Tssr133522 15 103253016 to 103253025 9 + TSS region transcription start site region 133522
Tssr136742 15 103253497 to 103253501 4 - TSS region transcription start site region 136742
Cpgi7882 15 103255051 to 103255498 447 CpG island CpG island 7882
Tssr136743 15 103255229 to 103255250 21 - TSS region transcription start site region 136743
Tssr136744 15 103255259 to 103255279 20 - TSS region transcription start site region 136744
Tssr136745 15 103255371 to 103255386 15 - TSS region transcription start site region 136745
Tssr136746 15 103255390 to 103255397 7 - TSS region transcription start site region 136746
Tssr136747 15 103255427 to 103255432 5 - TSS region transcription start site region 136747
Tssr136748 15 103255433 to 103255445 12 - TSS region transcription start site region 136748
Tssr136749 15 103260140 to 103260187 47 - TSS region transcription start site region 136749
Cpgi7883 15 103272560 to 103273149 589 CpG island CpG island 7883
Copz1 15 103272834 to 103299869 27035 + protein coding gene coatomer protein complex, subunit zeta 1
Tssr133523 15 103272888 to 103272892 4 + TSS region transcription start site region 133523
Tssr133524 15 103272893 to 103272907 14 + TSS region transcription start site region 133524
Tssr133525 15 103273805 to 103273808 3 + TSS region transcription start site region 133525
Tssr133526 15 103282047 to 103282051 4 + TSS region transcription start site region 133526
Mir148b 15 103285125 to 103285221 96 + miRNA gene microRNA 148b
Gm41406 15 103285701 to 103290490 4789 - lncRNA gene predicted gene, 41406
Tssr133527 15 103293404 to 103293406 2 + TSS region transcription start site region 133527
Tssr133528 15 103296725 to 103296759 34 + TSS region transcription start site region 133528
Tssr133529 15 103297880 to 103297900 20 + TSS region transcription start site region 133529
Tssr133530 15 103298663 to 103298669 6 + TSS region transcription start site region 133530
Tssr133531 15 103298785 to 103298808 23 + TSS region transcription start site region 133531
Tssr133532 15 103298869 to 103298888 19 + TSS region transcription start site region 133532