Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102497496-103397593

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcbp2 15 102470539 to 102500061 29522 + protein coding gene poly(rC) binding protein 2
Map3k12 15 102497647 to 102517004 19357 - protein coding gene mitogen-activated protein kinase kinase kinase 12
Tssr133448 15 102498509 to 102498525 16 + TSS region transcription start site region 133448
Tssr133449 15 102498527 to 102498563 36 + TSS region transcription start site region 133449
Tssr133450 15 102498678 to 102498689 11 + TSS region transcription start site region 133450
Tssr133451 15 102498729 to 102498740 11 + TSS region transcription start site region 133451
Tssr133452 15 102498767 to 102498778 11 + TSS region transcription start site region 133452
Gm10337 15 102503722 to 102503886 164 + protein coding gene predicted gene 10337
Cpgi7822 15 102510449 to 102511039 590 CpG island CpG island 7822
Tssr136698 15 102510624 to 102510649 25 - TSS region transcription start site region 136698
Tssr136699 15 102510681 to 102510705 24 - TSS region transcription start site region 136699
Tssr136700 15 102510768 to 102510797 29 - TSS region transcription start site region 136700
Tssr136701 15 102510814 to 102510825 11 - TSS region transcription start site region 136701
Tssr136702 15 102513486 to 102513490 4 - TSS region transcription start site region 136702
Gm46504 15 102516172 to 102517199 1027 + protein coding gene predicted gene, 46504
Cpgi7823 15 102516495 to 102517392 897 CpG island CpG island 7823
Tssr136703 15 102516806 to 102516855 49 - TSS region transcription start site region 136703
Tssr136704 15 102517836 to 102517856 20 - TSS region transcription start site region 136704
Cpgi7824 15 102517910 to 102518922 1012 CpG island CpG island 7824
Tarbp2 15 102518192 to 102523676 5484 + protein coding gene TARBP2, RISC loading complex RNA binding subunit
Tssr133453 15 102518307 to 102518331 24 + TSS region transcription start site region 133453
Tssr133454 15 102518405 to 102518496 91 + TSS region transcription start site region 133454
Tssr133455 15 102518714 to 102518778 64 + TSS region transcription start site region 133455
Tssr133456 15 102520739 to 102520747 8 + TSS region transcription start site region 133456
Tssr133457 15 102520798 to 102520805 7 + TSS region transcription start site region 133457
Tssr133458 15 102520818 to 102520838 20 + TSS region transcription start site region 133458
Tssr133459 15 102520846 to 102520865 19 + TSS region transcription start site region 133459
Npff 15 102523839 to 102524621 782 - protein coding gene neuropeptide FF-amide peptide precursor
Gm28047 15 102523843 to 102625067 101224 - protein coding gene predicted gene, 28047
Tssr136705 15 102524615 to 102524619 4 - TSS region transcription start site region 136705
Atf7 15 102525946 to 102625464 99518 - protein coding gene activating transcription factor 7
Tssr136706 15 102553832 to 102553854 22 - TSS region transcription start site region 136706
Tssr136707 15 102583460 to 102583466 6 - TSS region transcription start site region 136707
5830427D02Rik 15 102603008 to 102608006 4998 + lncRNA gene RIKEN cDNA 5830427D02 gene
Tssr136708 15 102624963 to 102624996 33 - TSS region transcription start site region 136708
Cpgi7825 15 102624993 to 102626153 1160 CpG island CpG island 7825
Tssr136709 15 102625061 to 102625100 39 - TSS region transcription start site region 136709
Tssr136710 15 102625436 to 102625499 63 - TSS region transcription start site region 136710
Tssr133460 15 102625584 to 102625602 18 + TSS region transcription start site region 133460
Gm25141 15 102627779 to 102627885 106 - snRNA gene predicted gene, 25141
Tssr133461 15 102634978 to 102634987 9 + TSS region transcription start site region 133461
Rpl39-ps 15 102635038 to 102635188 150 + pseudogene ribosomal protein L39, pseudogene
Tssr133462 15 102657110 to 102657118 8 + TSS region transcription start site region 133462
Gm4544 15 102657111 to 102660468 3357 + lincRNA gene predicted gene 4544
Tssr133463 15 102657466 to 102657477 11 + TSS region transcription start site region 133463
Atp5g2 15 102662868 to 102671047 8179 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
Cpgi7826 15 102670642 to 102671342 700 CpG island CpG island 7826
Tssr136711 15 102670961 to 102670970 9 - TSS region transcription start site region 136711
Tssr136712 15 102671033 to 102671086 53 - TSS region transcription start site region 136712
Cpgi7827 15 102671745 to 102672648 903 CpG island CpG island 7827
Mir688 15 102671792 to 102671866 74 - miRNA gene microRNA 688
Tssr136713 15 102671816 to 102671840 24 - TSS region transcription start site region 136713
Tssr133464 15 102671903 to 102671922 19 + TSS region transcription start site region 133464
Tssr133465 15 102671925 to 102671948 23 + TSS region transcription start site region 133465
Tssr133466 15 102671949 to 102671965 16 + TSS region transcription start site region 133466
Cpgi7828 15 102692360 to 102693401 1041 CpG island CpG island 7828
Calcoco1 15 102706777 to 102722178 15401 - protein coding gene calcium binding and coiled coil domain 1
Tssr136714 15 102707071 to 102707084 13 - TSS region transcription start site region 136714
Tssr136715 15 102707338 to 102707415 77 - TSS region transcription start site region 136715
Cpgi7829 15 102721957 to 102722508 551 CpG island CpG island 7829
Tssr136716 15 102722061 to 102722114 53 - TSS region transcription start site region 136716
Tssr136717 15 102722120 to 102722137 17 - TSS region transcription start site region 136717
Tssr136718 15 102722150 to 102722162 12 - TSS region transcription start site region 136718
Gm36510 15 102730500 to 102736130 5630 + lncRNA gene predicted gene, 36510
Cpgi7830 15 102736328 to 102736535 207 CpG island CpG island 7830
Cpgi7831 15 102737405 to 102737678 273 CpG island CpG island 7831
Cpgi7832 15 102743980 to 102744139 159 CpG island CpG island 7832
Cpgi7833 15 102746231 to 102747707 1476 CpG island CpG island 7833
Gm38436 15 102746441 to 102746909 468 - lncRNA gene predicted gene, 38436
Tssr133467 15 102750412 to 102750436 24 + TSS region transcription start site region 133467
Tssr133468 15 102762279 to 102762284 5 + TSS region transcription start site region 133468
D15Mit219.1 15 102772469 to 102772582 113 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 219.1
D15Mit219 15 102772612 to 102772702 90 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 219
Gm49473 15 102795121 to 102795371 250 - pseudogene predicted gene, 49473
Gm36560 15 102797495 to 102819544 22049 + lincRNA gene predicted gene, 36560
Gm10831 15 102852975 to 102854927 1952 unclassified non-coding RNA gene predicted gene 10831
Tssr133469 15 102889867 to 102889868 1 + TSS region transcription start site region 133469
Cpgi7834 15 102910177 to 102910591 414 CpG island CpG island 7834
Cpgi7835 15 102913087 to 102913350 263 CpG island CpG island 7835
Cpgi7836 15 102918470 to 102918621 151 CpG island CpG island 7836
Cpgi7837 15 102920790 to 102922290 1500 CpG island CpG island 7837
Tssr133470 15 102921121 to 102921132 11 + TSS region transcription start site region 133470
Hoxc13 15 102921131 to 102928814 7683 + protein coding gene homeobox C13
Tssr133471 15 102921137 to 102921142 5 + TSS region transcription start site region 133471
Tssr133472 15 102921147 to 102921169 22 + TSS region transcription start site region 133472
Tssr133473 15 102921172 to 102921199 27 + TSS region transcription start site region 133473
Cpgi7838 15 102927053 to 102927518 465 CpG island CpG island 7838
Tssr133474 15 102928086 to 102928092 6 + TSS region transcription start site region 133474
Tssr4741 15 102928154 to 102928200 46 + TSS region transcription start site region 4741
Cpgi7839 15 102931887 to 102932042 155 CpG island CpG island 7839
Cpgi7840 15 102934530 to 102934711 181 CpG island CpG island 7840
Gm36820 15 102934805 to 102936471 1666 - lncRNA gene predicted gene, 36820
Cpgi7841 15 102934934 to 102935283 349 CpG island CpG island 7841
Cpgi7842 15 102936662 to 102937542 880 CpG island CpG island 7842
Tssr133475 15 102936816 to 102936834 18 + TSS region transcription start site region 133475
Tssr133476 15 102936842 to 102936854 12 + TSS region transcription start site region 133476
Hoxc12 15 102936853 to 102938517 1664 + protein coding gene homeobox C12
Cpgi7843 15 102938189 to 102938508 319 CpG island CpG island 7843
Cpgi7844 15 102939447 to 102939829 382 CpG island CpG island 7844
Cpgi7845 15 102942704 to 102943510 806 CpG island CpG island 7845
Hotair 15 102944062 to 102947730 3668 - lincRNA gene HOX transcript antisense RNA (non-protein coding)
Gm27337 15 102945359 to 102945427 68 + unclassified non-coding RNA gene predicted gene, 27337
Gm27443 15 102947496 to 102947593 97 + unclassified non-coding RNA gene predicted gene, 27443
Gm28011 15 102949434 to 102949608 174 + unclassified non-coding RNA gene predicted gene, 28011
Cpgi7846 15 102949725 to 102950051 326 CpG island CpG island 7846
Gm27535 15 102949776 to 102949932 156 + unclassified non-coding RNA gene predicted gene, 27535
Cpgi7847 15 102954301 to 102955336 1035 CpG island CpG island 7847
Tssr4742 15 102954473 to 102954496 23 + TSS region transcription start site region 4742
Hoxc11 15 102954526 to 102956701 2175 + protein coding gene homeobox C11
Cpgi7848 15 102955749 to 102956597 848 CpG island CpG island 7848
Cpgi7849 15 102963706 to 102964067 361 CpG island CpG island 7849
Cpgi7850 15 102966441 to 102967915 1474 CpG island CpG island 7850
Tssr133477 15 102966739 to 102966751 12 + TSS region transcription start site region 133477
Tssr133478 15 102966752 to 102966774 22 + TSS region transcription start site region 133478
Tssr133479 15 102966794 to 102966812 18 + TSS region transcription start site region 133479
Hoxc10 15 102966796 to 102971893 5097 + protein coding gene homeobox C10
Tssr133480 15 102966857 to 102966871 14 + TSS region transcription start site region 133480
Tssr133481 15 102971436 to 102971474 38 + TSS region transcription start site region 133481
Tssr133482 15 102972229 to 102972235 6 + TSS region transcription start site region 133482
Cpgi7851 15 102972346 to 102972691 345 CpG island CpG island 7851
Mir196a-2 15 102973350 to 102973434 84 + miRNA gene microRNA 196a-2
Cpgi7852 15 102975705 to 102977670 1965 CpG island CpG island 7852
Gm4200 15 102976255 to 102978186 1931 protein coding gene predicted gene 4200
Hoxc9 15 102977032 to 102984444 7412 + protein coding gene homeobox C9
Tssr136719 15 102977463 to 102977478 15 - TSS region transcription start site region 136719
Cpgi7853 15 102978921 to 102979092 171 CpG island CpG island 7853
Tssr136720 15 102979296 to 102979329 33 - TSS region transcription start site region 136720
Gm36878 15 102980480 to 102981242 762 - lncRNA gene predicted gene, 36878
Cpgi7854 15 102981172 to 102982593 1421 CpG island CpG island 7854
Tssr133483 15 102981582 to 102981598 16 + TSS region transcription start site region 133483
Tssr133484 15 102981604 to 102981641 37 + TSS region transcription start site region 133484
Tssr133485 15 102982097 to 102982118 21 + TSS region transcription start site region 133485
Gm29852 15 102986689 to 102990306 3617 - lncRNA gene predicted gene, 29852
D15Mit16.1 15 102987916 to 102988038 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.1
D15Mit16 15 102988005 to 102988123 118 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16
Bmca 15 102988005 to 102988123 118 QTL bile mucin accumulation
Sluc34a 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34a
Sluc34b 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34b
D15Mit16.2 15 102988108 to 102988222 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.2
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough
Sluc34 15 102988123 to 97987052 -5001071 QTL susceptibility to lung cancer 34
Hyplip2 15 102988123 to 12402117 -90586006 QTL hyperlipidemia 2
Tssr133486 15 102988290 to 102988291 1 + TSS region transcription start site region 133486
Cpgi7855 15 102990089 to 102991328 1239 CpG island CpG island 7855
Tssr133487 15 102990481 to 102990492 11 + TSS region transcription start site region 133487
Tssr133488 15 102990515 to 102990530 15 + TSS region transcription start site region 133488
Tssr133489 15 102990533 to 102990575 42 + TSS region transcription start site region 133489
Tssr133490 15 102990576 to 102990590 14 + TSS region transcription start site region 133490
Hoxc8 15 102990607 to 102994111 3504 + protein coding gene homeobox C8
Tssr133491 15 102990863 to 102990882 19 + TSS region transcription start site region 133491
Tssr133492 15 102990908 to 102990909 1 + TSS region transcription start site region 133492
Tssr133493 15 102990915 to 102990925 10 + TSS region transcription start site region 133493
Tssr133494 15 102990935 to 102990940 5 + TSS region transcription start site region 133494
Tssr133495 15 102990949 to 102990952 3 + TSS region transcription start site region 133495
Tssr133496 15 102990972 to 102990986 14 + TSS region transcription start site region 133496
Tssr133497 15 102990994 to 102991000 6 + TSS region transcription start site region 133497
Tssr133498 15 102991004 to 102991009 5 + TSS region transcription start site region 133498
Tssr133499 15 102991158 to 102991176 18 + TSS region transcription start site region 133499
D15Mit15 15 102993114 to 102993272 158 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 15
Skull22 15 102993114 to 102993272 158 QTL skull morphology 22
Epfpq3 15 102993272 to 78716903 -24276369 QTL epididymal fat percentage QTL 3
W3q6 15 102993272 to 78716903 -24276369 QTL weight 3 weeks QTL 6
Cpgi7856 15 102995818 to 102996040 222 CpG island CpG island 7856
Gm29905 15 102997332 to 102998135 803 - lncRNA gene predicted gene, 29905
Cpgi7857 15 102998058 to 102998268 210 CpG island CpG island 7857
Tssr133500 15 102998211 to 102998222 11 + TSS region transcription start site region 133500
Tssr133501 15 102998227 to 102998247 20 + TSS region transcription start site region 133501
Hoxc6 15 102998257 to 103011881 13624 + protein coding gene homeobox C6
Cpgi7858 15 102998959 to 102999631 672 CpG island CpG island 7858
Cpgi7859 15 103000581 to 103000925 344 CpG island CpG island 7859
Cpgi7860 15 103005440 to 103005671 231 CpG island CpG island 7860
Tssr133502 15 103009481 to 103009507 26 + TSS region transcription start site region 133502
Tssr133503 15 103009517 to 103009544 27 + TSS region transcription start site region 133503
Tssr133504 15 103009545 to 103009558 13 + TSS region transcription start site region 133504
Cpgi7861 15 103009655 to 103009854 199 CpG island CpG island 7861
Tssr133505 15 103010127 to 103010140 13 + TSS region transcription start site region 133505
Cpgi7862 15 103010615 to 103010897 282 CpG island CpG island 7862
Tssr133506 15 103014000 to 103014014 14 + TSS region transcription start site region 133506
Hoxc5 15 103014008 to 103017429 3421 + protein coding gene homeobox C5
Tssr133507 15 103014129 to 103014145 16 + TSS region transcription start site region 133507
Cpgi7863 15 103014156 to 103014589 433 CpG island CpG island 7863
Tssr4743 15 103014337 to 103014368 31 + TSS region transcription start site region 4743
Tssr133508 15 103014370 to 103014389 19 + TSS region transcription start site region 133508
Cpgi7864 15 103014852 to 103015336 484 CpG island CpG island 7864
Mir615 15 103014910 to 103015001 91 + miRNA gene microRNA 615
Hoxc4 15 103018934 to 103036852 17918 + protein coding gene homeobox C4
Tssr133509 15 103018964 to 103018973 9 + TSS region transcription start site region 133509
Gm30528 15 103026807 to 103063780 36973 - lncRNA gene predicted gene, 30528
Cpgi7865 15 103027474 to 103027814 340 CpG island CpG island 7865
Cpgi7866 15 103034600 to 103035109 509 CpG island CpG island 7866
Tssr133510 15 103034617 to 103034642 25 + TSS region transcription start site region 133510
Tssr133511 15 103034657 to 103034676 19 + TSS region transcription start site region 133511
Tssr133512 15 103034700 to 103034720 20 + TSS region transcription start site region 133512
Cpgi7867 15 103035556 to 103035988 432 CpG island CpG island 7867
Cpgi7868 15 103041022 to 103041376 354 CpG island CpG island 7868
5730585A16Rik 15 103058280 to 103059306 1026 - protein coding gene RIKEN cDNA 5730585A16 gene
Cpgi7869 15 103060565 to 103061061 496 CpG island CpG island 7869
Cpgi7870 15 103061542 to 103061785 243 CpG island CpG island 7870
Cpgi7871 15 103069170 to 103069526 356 CpG island CpG island 7871