Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102330500-103136130

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323 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pfdn5 15 102326116 to 102331490 5374 + protein coding gene prefoldin 5
Cpgi7812 15 102331582 to 102332249 667 CpG island CpG island 7812
Tssr133380 15 102331700 to 102331777 77 + TSS region transcription start site region 133380
Myg1 15 102331709 to 102338139 6430 + protein coding gene melanocyte proliferating gene 1
Tssr133381 15 102331920 to 102331953 33 + TSS region transcription start site region 133381
Tssr133382 15 102331960 to 102331991 31 + TSS region transcription start site region 133382
Aaas 15 102338247 to 102350759 12512 - protein coding gene achalasia, adrenocortical insufficiency, alacrimia
Cpgi7813 15 102350339 to 102350970 631 CpG island CpG island 7813
Tssr136682 15 102350593 to 102350605 12 - TSS region transcription start site region 136682
Tssr136683 15 102350634 to 102350690 56 - TSS region transcription start site region 136683
Tssr136684 15 102350692 to 102350771 79 - TSS region transcription start site region 136684
Gm36246 15 102350827 to 102355139 4312 + bidirectional promoter lncRNA gene predicted gene, 36246
Cpgi7814 15 102355247 to 102356384 1137 CpG island CpG island 7814
Sp7 15 102356606 to 102367040 10434 - protein coding gene Sp7 transcription factor 7
Cpgi7815 15 102358166 to 102358756 590 CpG island CpG island 7815
Tssr133383 15 102365227 to 102365235 8 + TSS region transcription start site region 133383
Tssr136685 15 102366271 to 102366282 11 - TSS region transcription start site region 136685
Tssr136686 15 102366314 to 102366338 24 - TSS region transcription start site region 136686
Tssr136687 15 102366359 to 102366368 9 - TSS region transcription start site region 136687
Tssr136688 15 102366974 to 102367023 49 - TSS region transcription start site region 136688
Gm23590 15 102373880 to 102373983 103 + snRNA gene predicted gene, 23590
Cpgi7816 15 102376678 to 102377437 759 CpG island CpG island 7816
Tssr133384 15 102376954 to 102376974 20 + TSS region transcription start site region 133384
Tssr133385 15 102386923 to 102386934 11 + TSS region transcription start site region 133385
Tssr133386 15 102391142 to 102391173 31 + TSS region transcription start site region 133386
Tssr133387 15 102392802 to 102392815 13 + TSS region transcription start site region 133387
Tssr133388 15 102392934 to 102392958 24 + TSS region transcription start site region 133388
Tssr133389 15 102393787 to 102393801 14 + TSS region transcription start site region 133389
Tssr133390 15 102394086 to 102394114 28 + TSS region transcription start site region 133390
Tssr136689 15 102395226 to 102395239 13 - TSS region transcription start site region 136689
Tssr136690 15 102398672 to 102398689 17 - TSS region transcription start site region 136690
Tssr136691 15 102398694 to 102398711 17 - TSS region transcription start site region 136691
Tssr136692 15 102399666 to 102399716 50 - TSS region transcription start site region 136692
Cpgi7817 15 102399696 to 102399852 156 CpG island CpG island 7817
Tssr133391 15 102399791 to 102399807 16 + TSS region transcription start site region 133391
Tssr133392 15 102399835 to 102399852 17 + TSS region transcription start site region 133392
Tssr133393 15 102401364 to 102401370 6 + TSS region transcription start site region 133393
Tssr133394 15 102401933 to 102401936 3 + TSS region transcription start site region 133394
Tssr133395 15 102401948 to 102401958 10 + TSS region transcription start site region 133395
Tssr133396 15 102402394 to 102402429 35 + TSS region transcription start site region 133396
Tssr136693 15 102403835 to 102403873 38 - TSS region transcription start site region 136693
Cpgi7818 15 102405154 to 102406895 1741 CpG island CpG island 7818
Tssr136694 15 102405504 to 102405521 17 - TSS region transcription start site region 136694
Tssr136695 15 102405544 to 102405573 29 - TSS region transcription start site region 136695
Tssr136696 15 102405575 to 102405620 45 - TSS region transcription start site region 136696
Tssr136697 15 102405688 to 102405702 14 - TSS region transcription start site region 136697
Tssr133397 15 102406269 to 102406333 64 + TSS region transcription start site region 133397
Sp1 15 102406316 to 102436404 30088 + protein coding gene trans-acting transcription factor 1
Tssr4739 15 102406374 to 102406398 24 + TSS region transcription start site region 4739
Tssr133398 15 102406967 to 102406977 10 + TSS region transcription start site region 133398
Tssr133399 15 102407144 to 102407147 3 + TSS region transcription start site region 133399
Amhr2 15 102445367 to 102454633 9266 + protein coding gene anti-Mullerian hormone type 2 receptor
Tssr133400 15 102445387 to 102445403 16 + TSS region transcription start site region 133400
Tssr133401 15 102446668 to 102446695 27 + TSS region transcription start site region 133401
Cpgi7819 15 102452178 to 102452475 297 CpG island CpG island 7819
Gm26518 15 102455526 to 102483722 28196 - lincRNA gene predicted gene, 26518
Gm24128 15 102456563 to 102456661 98 + snRNA gene predicted gene, 24128
Cpgi7820 15 102458907 to 102459232 325 CpG island CpG island 7820
Tssr133402 15 102459166 to 102459183 17 + TSS region transcription start site region 133402
Prr13 15 102459170 to 102462806 3636 + protein coding gene proline rich 13
Tssr133403 15 102459193 to 102459220 27 + TSS region transcription start site region 133403
Tssr133404 15 102459483 to 102459510 27 + TSS region transcription start site region 133404
Tssr133405 15 102460058 to 102460065 7 + TSS region transcription start site region 133405
Tssr133406 15 102460076 to 102460108 32 + TSS region transcription start site region 133406
Tssr133407 15 102460113 to 102460122 9 + TSS region transcription start site region 133407
Tssr133408 15 102460366 to 102460381 15 + TSS region transcription start site region 133408
Tssr133409 15 102460403 to 102460418 15 + TSS region transcription start site region 133409
Tssr133410 15 102460440 to 102460471 31 + TSS region transcription start site region 133410
Tssr133411 15 102460478 to 102460490 12 + TSS region transcription start site region 133411
Tssr133412 15 102460500 to 102460519 19 + TSS region transcription start site region 133412
Tssr133413 15 102460531 to 102460578 47 + TSS region transcription start site region 133413
Tssr133414 15 102460592 to 102460616 24 + TSS region transcription start site region 133414
Tssr133415 15 102461337 to 102461368 31 + TSS region transcription start site region 133415
Tssr133416 15 102462164 to 102462193 29 + TSS region transcription start site region 133416
Tssr133417 15 102462218 to 102462243 25 + TSS region transcription start site region 133417
Tssr133418 15 102462252 to 102462263 11 + TSS region transcription start site region 133418
Tssr133419 15 102462298 to 102462311 13 + TSS region transcription start site region 133419
Tssr133420 15 102462370 to 102462379 9 + TSS region transcription start site region 133420
Tssr133421 15 102462429 to 102462443 14 + TSS region transcription start site region 133421
Tssr133422 15 102462519 to 102462536 17 + TSS region transcription start site region 133422
Tssr133423 15 102463630 to 102463644 14 + TSS region transcription start site region 133423
Gm36331 15 102469441 to 102470386 945 - lncRNA gene predicted gene, 36331
Tssr133424 15 102469555 to 102469561 6 + TSS region transcription start site region 133424
Cpgi7821 15 102470205 to 102471265 1060 CpG island CpG island 7821
Tssr133425 15 102470534 to 102470546 12 + TSS region transcription start site region 133425
Pcbp2 15 102470539 to 102500061 29522 + protein coding gene poly(rC) binding protein 2
Tssr133426 15 102470699 to 102470716 17 + TSS region transcription start site region 133426
Tssr133427 15 102470718 to 102470790 72 + TSS region transcription start site region 133427
Tssr133428 15 102471169 to 102471184 15 + TSS region transcription start site region 133428
Tssr133429 15 102471187 to 102471196 9 + TSS region transcription start site region 133429
Tssr133430 15 102471295 to 102471301 6 + TSS region transcription start site region 133430
Tssr4740 15 102471806 to 102471809 3 + TSS region transcription start site region 4740
Tssr133431 15 102473482 to 102473491 9 + TSS region transcription start site region 133431
Tssr133432 15 102473496 to 102473501 5 + TSS region transcription start site region 133432
Tssr133433 15 102473510 to 102473518 8 + TSS region transcription start site region 133433
Tssr133434 15 102473789 to 102473800 11 + TSS region transcription start site region 133434
Tssr133435 15 102478646 to 102478670 24 + TSS region transcription start site region 133435
Tssr133436 15 102483179 to 102483203 24 + TSS region transcription start site region 133436
Tssr133437 15 102483204 to 102483239 35 + TSS region transcription start site region 133437
Tssr133438 15 102484153 to 102484188 35 + TSS region transcription start site region 133438
Tssr133439 15 102484195 to 102484204 9 + TSS region transcription start site region 133439
Gm27406 15 102485908 to 102486089 181 + unclassified non-coding RNA gene predicted gene, 27406
Tssr133440 15 102485970 to 102485990 20 + TSS region transcription start site region 133440
Tssr133441 15 102486255 to 102486261 6 + TSS region transcription start site region 133441
Tssr133442 15 102487061 to 102487107 46 + TSS region transcription start site region 133442
Tssr133443 15 102487922 to 102487934 12 + TSS region transcription start site region 133443
Tssr133444 15 102489732 to 102489778 46 + TSS region transcription start site region 133444
Tssr133445 15 102490692 to 102490752 60 + TSS region transcription start site region 133445
Tssr133446 15 102493208 to 102493212 4 + TSS region transcription start site region 133446
Tssr133447 15 102493489 to 102493501 12 + TSS region transcription start site region 133447
Map3k12 15 102497647 to 102517004 19357 - protein coding gene mitogen-activated protein kinase kinase kinase 12
Tssr133448 15 102498509 to 102498525 16 + TSS region transcription start site region 133448
Tssr133449 15 102498527 to 102498563 36 + TSS region transcription start site region 133449
Tssr133450 15 102498678 to 102498689 11 + TSS region transcription start site region 133450
Tssr133451 15 102498729 to 102498740 11 + TSS region transcription start site region 133451
Tssr133452 15 102498767 to 102498778 11 + TSS region transcription start site region 133452
Gm10337 15 102503722 to 102503886 164 + protein coding gene predicted gene 10337
Cpgi7822 15 102510449 to 102511039 590 CpG island CpG island 7822
Tssr136698 15 102510624 to 102510649 25 - TSS region transcription start site region 136698
Tssr136699 15 102510681 to 102510705 24 - TSS region transcription start site region 136699
Tssr136700 15 102510768 to 102510797 29 - TSS region transcription start site region 136700
Tssr136701 15 102510814 to 102510825 11 - TSS region transcription start site region 136701
Tssr136702 15 102513486 to 102513490 4 - TSS region transcription start site region 136702
Gm46504 15 102516172 to 102517199 1027 + protein coding gene predicted gene, 46504
Cpgi7823 15 102516495 to 102517392 897 CpG island CpG island 7823
Tssr136703 15 102516806 to 102516855 49 - TSS region transcription start site region 136703
Tssr136704 15 102517836 to 102517856 20 - TSS region transcription start site region 136704
Cpgi7824 15 102517910 to 102518922 1012 CpG island CpG island 7824
Tarbp2 15 102518192 to 102523676 5484 + protein coding gene TARBP2, RISC loading complex RNA binding subunit
Tssr133453 15 102518307 to 102518331 24 + TSS region transcription start site region 133453
Tssr133454 15 102518405 to 102518496 91 + TSS region transcription start site region 133454
Tssr133455 15 102518714 to 102518778 64 + TSS region transcription start site region 133455
Tssr133456 15 102520739 to 102520747 8 + TSS region transcription start site region 133456
Tssr133457 15 102520798 to 102520805 7 + TSS region transcription start site region 133457
Tssr133458 15 102520818 to 102520838 20 + TSS region transcription start site region 133458
Tssr133459 15 102520846 to 102520865 19 + TSS region transcription start site region 133459
Npff 15 102523839 to 102524621 782 - protein coding gene neuropeptide FF-amide peptide precursor
Gm28047 15 102523843 to 102625067 101224 - protein coding gene predicted gene, 28047
Tssr136705 15 102524615 to 102524619 4 - TSS region transcription start site region 136705
Atf7 15 102525946 to 102625464 99518 - protein coding gene activating transcription factor 7
Tssr136706 15 102553832 to 102553854 22 - TSS region transcription start site region 136706
Tssr136707 15 102583460 to 102583466 6 - TSS region transcription start site region 136707
5830427D02Rik 15 102603008 to 102608006 4998 + lncRNA gene RIKEN cDNA 5830427D02 gene
Tssr136708 15 102624963 to 102624996 33 - TSS region transcription start site region 136708
Cpgi7825 15 102624993 to 102626153 1160 CpG island CpG island 7825
Tssr136709 15 102625061 to 102625100 39 - TSS region transcription start site region 136709
Tssr136710 15 102625436 to 102625499 63 - TSS region transcription start site region 136710
Tssr133460 15 102625584 to 102625602 18 + TSS region transcription start site region 133460
Gm25141 15 102627779 to 102627885 106 - snRNA gene predicted gene, 25141
Tssr133461 15 102634978 to 102634987 9 + TSS region transcription start site region 133461
Rpl39-ps 15 102635038 to 102635188 150 + pseudogene ribosomal protein L39, pseudogene
Tssr133462 15 102657110 to 102657118 8 + TSS region transcription start site region 133462
Gm4544 15 102657111 to 102660468 3357 + lincRNA gene predicted gene 4544
Tssr133463 15 102657466 to 102657477 11 + TSS region transcription start site region 133463
Atp5g2 15 102662868 to 102671047 8179 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
Cpgi7826 15 102670642 to 102671342 700 CpG island CpG island 7826
Tssr136711 15 102670961 to 102670970 9 - TSS region transcription start site region 136711
Tssr136712 15 102671033 to 102671086 53 - TSS region transcription start site region 136712
Cpgi7827 15 102671745 to 102672648 903 CpG island CpG island 7827
Mir688 15 102671792 to 102671866 74 - miRNA gene microRNA 688
Tssr136713 15 102671816 to 102671840 24 - TSS region transcription start site region 136713
Tssr133464 15 102671903 to 102671922 19 + TSS region transcription start site region 133464
Tssr133465 15 102671925 to 102671948 23 + TSS region transcription start site region 133465
Tssr133466 15 102671949 to 102671965 16 + TSS region transcription start site region 133466
Cpgi7828 15 102692360 to 102693401 1041 CpG island CpG island 7828
Calcoco1 15 102706777 to 102722178 15401 - protein coding gene calcium binding and coiled coil domain 1
Tssr136714 15 102707071 to 102707084 13 - TSS region transcription start site region 136714
Tssr136715 15 102707338 to 102707415 77 - TSS region transcription start site region 136715
Cpgi7829 15 102721957 to 102722508 551 CpG island CpG island 7829
Tssr136716 15 102722061 to 102722114 53 - TSS region transcription start site region 136716
Tssr136717 15 102722120 to 102722137 17 - TSS region transcription start site region 136717
Tssr136718 15 102722150 to 102722162 12 - TSS region transcription start site region 136718
Gm36510 15 102730500 to 102736130 5630 + lncRNA gene predicted gene, 36510
Cpgi7830 15 102736328 to 102736535 207 CpG island CpG island 7830
Cpgi7831 15 102737405 to 102737678 273 CpG island CpG island 7831
Cpgi7832 15 102743980 to 102744139 159 CpG island CpG island 7832
Cpgi7833 15 102746231 to 102747707 1476 CpG island CpG island 7833
Gm38436 15 102746441 to 102746909 468 - lncRNA gene predicted gene, 38436
Tssr133467 15 102750412 to 102750436 24 + TSS region transcription start site region 133467
Tssr133468 15 102762279 to 102762284 5 + TSS region transcription start site region 133468
D15Mit219.1 15 102772469 to 102772582 113 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 219.1
D15Mit219 15 102772612 to 102772702 90 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 219
Gm49473 15 102795121 to 102795371 250 - pseudogene predicted gene, 49473
Gm36560 15 102797495 to 102819544 22049 + lincRNA gene predicted gene, 36560
Gm10831 15 102852975 to 102854927 1952 unclassified non-coding RNA gene predicted gene 10831
Tssr133469 15 102889867 to 102889868 1 + TSS region transcription start site region 133469
Cpgi7834 15 102910177 to 102910591 414 CpG island CpG island 7834
Cpgi7835 15 102913087 to 102913350 263 CpG island CpG island 7835
Cpgi7836 15 102918470 to 102918621 151 CpG island CpG island 7836
Cpgi7837 15 102920790 to 102922290 1500 CpG island CpG island 7837
Tssr133470 15 102921121 to 102921132 11 + TSS region transcription start site region 133470
Hoxc13 15 102921131 to 102928814 7683 + protein coding gene homeobox C13
Tssr133471 15 102921137 to 102921142 5 + TSS region transcription start site region 133471
Tssr133472 15 102921147 to 102921169 22 + TSS region transcription start site region 133472
Tssr133473 15 102921172 to 102921199 27 + TSS region transcription start site region 133473
Cpgi7838 15 102927053 to 102927518 465 CpG island CpG island 7838
Tssr133474 15 102928086 to 102928092 6 + TSS region transcription start site region 133474
Tssr4741 15 102928154 to 102928200 46 + TSS region transcription start site region 4741
Cpgi7839 15 102931887 to 102932042 155 CpG island CpG island 7839
Cpgi7840 15 102934530 to 102934711 181 CpG island CpG island 7840