Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102248247-102440759

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rarg 15 102234938 to 102257517 22579 - protein coding gene retinoic acid receptor, gamma
Tssr136676 15 102249089 to 102249092 3 - TSS region transcription start site region 136676
Tssr136677 15 102252612 to 102252628 16 - TSS region transcription start site region 136677
Cpgi7807 15 102256976 to 102257729 753 CpG island CpG island 7807
Tssr136678 15 102257306 to 102257370 64 - TSS region transcription start site region 136678
Tssr136679 15 102257379 to 102257417 38 - TSS region transcription start site region 136679
Tssr136680 15 102257449 to 102257496 47 - TSS region transcription start site region 136680
Tssr133362 15 102270540 to 102270580 40 + TSS region transcription start site region 133362
Gm9918 15 102270563 to 102274121 3558 + protein coding gene predicted gene 9918
Cpgi7808 15 102270767 to 102271058 291 CpG island CpG island 7808
Cpgi7809 15 102279051 to 102280101 1050 CpG island CpG island 7809
Tssr136681 15 102279359 to 102279375 16 - TSS region transcription start site region 136681
Tssr133363 15 102279430 to 102279445 15 + TSS region transcription start site region 133363
Tssr133364 15 102279446 to 102279475 29 + TSS region transcription start site region 133364
Mfsd5 15 102279456 to 102281744 2288 + protein coding gene major facilitator superfamily domain containing 5
Tssr133365 15 102279481 to 102279488 7 + TSS region transcription start site region 133365
Tssr133366 15 102279495 to 102279548 53 + TSS region transcription start site region 133366
Tssr133367 15 102279553 to 102279572 19 + TSS region transcription start site region 133367
Tssr133368 15 102279730 to 102279764 34 + TSS region transcription start site region 133368
Tssr133369 15 102280503 to 102280529 26 + TSS region transcription start site region 133369
Gm49479 15 102295437 to 102296151 714 - bidirectional promoter lncRNA gene predicted gene, 49479
Cpgi7810 15 102296067 to 102296648 581 CpG island CpG island 7810
Tssr133370 15 102296256 to 102296330 74 + TSS region transcription start site region 133370
Espl1 15 102296266 to 102324357 28091 + protein coding gene extra spindle pole bodies 1, separase
Tssr133371 15 102296407 to 102296408 1 + TSS region transcription start site region 133371
Tssr133372 15 102296414 to 102296427 13 + TSS region transcription start site region 133372
Tssr133373 15 102300384 to 102300388 4 + TSS region transcription start site region 133373
Gm49480 15 102308621 to 102308762 141 - pseudogene predicted gene, 49480
Tssr4738 15 102315411 to 102315426 15 + TSS region transcription start site region 4738
Cpgi7811 15 102325989 to 102326596 607 CpG island CpG island 7811
Pfdn5 15 102326116 to 102331490 5374 + protein coding gene prefoldin 5
Tssr133374 15 102326132 to 102326152 20 + TSS region transcription start site region 133374
Tssr133375 15 102326155 to 102326171 16 + TSS region transcription start site region 133375
Tssr133376 15 102326172 to 102326181 9 + TSS region transcription start site region 133376
Tssr133377 15 102326369 to 102326387 18 + TSS region transcription start site region 133377
Tssr133378 15 102326400 to 102326429 29 + TSS region transcription start site region 133378
Tssr133379 15 102328515 to 102328555 40 + TSS region transcription start site region 133379
Cpgi7812 15 102331582 to 102332249 667 CpG island CpG island 7812
Tssr133380 15 102331700 to 102331777 77 + TSS region transcription start site region 133380
Myg1 15 102331709 to 102338139 6430 + protein coding gene melanocyte proliferating gene 1
Tssr133381 15 102331920 to 102331953 33 + TSS region transcription start site region 133381
Tssr133382 15 102331960 to 102331991 31 + TSS region transcription start site region 133382
Aaas 15 102338247 to 102350759 12512 - protein coding gene achalasia, adrenocortical insufficiency, alacrimia
Cpgi7813 15 102350339 to 102350970 631 CpG island CpG island 7813
Tssr136682 15 102350593 to 102350605 12 - TSS region transcription start site region 136682
Tssr136683 15 102350634 to 102350690 56 - TSS region transcription start site region 136683
Tssr136684 15 102350692 to 102350771 79 - TSS region transcription start site region 136684
Gm36246 15 102350827 to 102355139 4312 + bidirectional promoter lncRNA gene predicted gene, 36246
Cpgi7814 15 102355247 to 102356384 1137 CpG island CpG island 7814
Sp7 15 102356606 to 102367040 10434 - protein coding gene Sp7 transcription factor 7
Cpgi7815 15 102358166 to 102358756 590 CpG island CpG island 7815
Tssr133383 15 102365227 to 102365235 8 + TSS region transcription start site region 133383
Tssr136685 15 102366271 to 102366282 11 - TSS region transcription start site region 136685
Tssr136686 15 102366314 to 102366338 24 - TSS region transcription start site region 136686
Tssr136687 15 102366359 to 102366368 9 - TSS region transcription start site region 136687
Tssr136688 15 102366974 to 102367023 49 - TSS region transcription start site region 136688
Gm23590 15 102373880 to 102373983 103 + snRNA gene predicted gene, 23590
Cpgi7816 15 102376678 to 102377437 759 CpG island CpG island 7816
Tssr133384 15 102376954 to 102376974 20 + TSS region transcription start site region 133384
Tssr133385 15 102386923 to 102386934 11 + TSS region transcription start site region 133385
Tssr133386 15 102391142 to 102391173 31 + TSS region transcription start site region 133386
Tssr133387 15 102392802 to 102392815 13 + TSS region transcription start site region 133387
Tssr133388 15 102392934 to 102392958 24 + TSS region transcription start site region 133388
Tssr133389 15 102393787 to 102393801 14 + TSS region transcription start site region 133389
Tssr133390 15 102394086 to 102394114 28 + TSS region transcription start site region 133390
Tssr136689 15 102395226 to 102395239 13 - TSS region transcription start site region 136689
Tssr136690 15 102398672 to 102398689 17 - TSS region transcription start site region 136690
Tssr136691 15 102398694 to 102398711 17 - TSS region transcription start site region 136691
Tssr136692 15 102399666 to 102399716 50 - TSS region transcription start site region 136692
Cpgi7817 15 102399696 to 102399852 156 CpG island CpG island 7817
Tssr133391 15 102399791 to 102399807 16 + TSS region transcription start site region 133391
Tssr133392 15 102399835 to 102399852 17 + TSS region transcription start site region 133392
Tssr133393 15 102401364 to 102401370 6 + TSS region transcription start site region 133393
Tssr133394 15 102401933 to 102401936 3 + TSS region transcription start site region 133394
Tssr133395 15 102401948 to 102401958 10 + TSS region transcription start site region 133395
Tssr133396 15 102402394 to 102402429 35 + TSS region transcription start site region 133396
Tssr136693 15 102403835 to 102403873 38 - TSS region transcription start site region 136693
Cpgi7818 15 102405154 to 102406895 1741 CpG island CpG island 7818
Tssr136694 15 102405504 to 102405521 17 - TSS region transcription start site region 136694
Tssr136695 15 102405544 to 102405573 29 - TSS region transcription start site region 136695
Tssr136696 15 102405575 to 102405620 45 - TSS region transcription start site region 136696
Tssr136697 15 102405688 to 102405702 14 - TSS region transcription start site region 136697
Tssr133397 15 102406269 to 102406333 64 + TSS region transcription start site region 133397
Sp1 15 102406316 to 102436404 30088 + protein coding gene trans-acting transcription factor 1
Tssr4739 15 102406374 to 102406398 24 + TSS region transcription start site region 4739
Tssr133398 15 102406967 to 102406977 10 + TSS region transcription start site region 133398
Tssr133399 15 102407144 to 102407147 3 + TSS region transcription start site region 133399