Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:101893400-102513443

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293 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(15Krt80-Krt18)1Tmm 15 101348315 to 102032026 683711 chromosomal deletion deletion, Chr 15, Thomas M Magin 1
Gm49434 15 101906924 to 101910149 3225 - pseudogene predicted gene, 49434
Krt4 15 101918535 to 101924735 6200 - protein coding gene keratin 4
Tssr136637 15 101918568 to 101918578 10 - TSS region transcription start site region 136637
Tssr136638 15 101918579 to 101918590 11 - TSS region transcription start site region 136638
Tssr136639 15 101918800 to 101918819 19 - TSS region transcription start site region 136639
Cpgi7789 15 101924165 to 101924651 486 CpG island CpG island 7789
Tssr136640 15 101924725 to 101924742 17 - TSS region transcription start site region 136640
Tssr136641 15 101929276 to 101929281 5 - TSS region transcription start site region 136641
Krt79 15 101929332 to 101940324 10992 - protein coding gene keratin 79
Mdq17 15 101937324 to 101937324 0 QTL mammary ductal QTL 17
Tssr136642 15 101938663 to 101938696 33 - TSS region transcription start site region 136642
Tssr133311 15 101939162 to 101939178 16 + TSS region transcription start site region 133311
Tssr136643 15 101940255 to 101940268 13 - TSS region transcription start site region 136643
Tssr136644 15 101940427 to 101940434 7 - TSS region transcription start site region 136644
Krt78 15 101946001 to 101954287 8286 - protein coding gene keratin 78
Tssr136645 15 101954249 to 101954265 16 - TSS region transcription start site region 136645
Tssr136646 15 101954276 to 101954294 18 - TSS region transcription start site region 136646
Cpgi7790 15 101977016 to 101977879 863 CpG island CpG island 7790
D15Ertd430e 15 101982836 to 101983051 215 DNA segment DNA segment, Chr 15, ERATO Doi 430, expressed
Cpgi7791 15 101983078 to 101983468 390 CpG island CpG island 7791
Krt8 15 101996711 to 102004342 7631 - protein coding gene keratin 8
Tssr133312 15 101999486 to 101999493 7 + TSS region transcription start site region 133312
Cpgi7792 15 102002934 to 102003414 480 CpG island CpG island 7792
Cpgi7793 15 102003825 to 102004339 514 CpG island CpG island 7793
Tssr136647 15 102004305 to 102004321 16 - TSS region transcription start site region 136647
Gm36026 15 102006143 to 102009445 3302 + lincRNA gene predicted gene, 36026
Tssr4735 15 102009124 to 102009143 19 - TSS region transcription start site region 4735
Gm41404 15 102010591 to 102017249 6658 - lncRNA gene predicted gene, 41404
Cpgi7794 15 102027914 to 102028472 558 CpG island CpG island 7794
Tssr133313 15 102028200 to 102028211 11 + TSS region transcription start site region 133313
Krt18 15 102028216 to 102032026 3810 + protein coding gene keratin 18
Tssr133314 15 102028218 to 102028235 17 + TSS region transcription start site region 133314
D15Mit40 15 102029302 to 102029441 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 40
Tssr133315 15 102029881 to 102029893 12 + TSS region transcription start site region 133315
Gm41405 15 102045318 to 102047265 1947 + lncRNA gene predicted gene, 41405
Cpgi7795 15 102052098 to 102052498 400 CpG island CpG island 7795
Cpgi7796 15 102065751 to 102066003 252 CpG island CpG island 7796
Cpgi7797 15 102073535 to 102074828 1293 CpG island CpG island 7797
Tssr136648 15 102073589 to 102073611 22 - TSS region transcription start site region 136648
Tssr133316 15 102073639 to 102073642 3 + TSS region transcription start site region 133316
Tssr133317 15 102073644 to 102073654 10 + TSS region transcription start site region 133317
Eif4b 15 102073773 to 102097173 23400 + protein coding gene eukaryotic translation initiation factor 4B
Tssr133318 15 102073891 to 102073903 12 + TSS region transcription start site region 133318
Tssr133319 15 102073915 to 102073934 19 + TSS region transcription start site region 133319
Gm9693 15 102074153 to 102075968 1815 unclassified gene predicted gene 9693
Tssr133320 15 102074189 to 102074201 12 + TSS region transcription start site region 133320
A030007N12Rik 15 102077423 to 102080223 2800 unclassified non-coding RNA gene RIKEN cDNA A030007N12 gene
Tssr133321 15 102089969 to 102089988 19 + TSS region transcription start site region 133321
Tssr133322 15 102095306 to 102095321 15 + TSS region transcription start site region 133322
Tssr133323 15 102098443 to 102098498 55 + TSS region transcription start site region 133323
Cpgi7798 15 102099953 to 102101102 1149 CpG island CpG island 7798
Tssr133324 15 102100365 to 102100384 19 + TSS region transcription start site region 133324
Tssr133325 15 102100394 to 102100423 29 + TSS region transcription start site region 133325
Tns2 15 102100413 to 102116401 15988 + protein coding gene tensin 2
Tssr133326 15 102102198 to 102102242 44 + TSS region transcription start site region 133326
Tssr133327 15 102102926 to 102102975 49 + TSS region transcription start site region 133327
Tssr4736 15 102102980 to 102102985 5 + TSS region transcription start site region 4736
Tssr133328 15 102103076 to 102103083 7 + TSS region transcription start site region 133328
Tssr133329 15 102104347 to 102104358 11 + TSS region transcription start site region 133329
Tssr133330 15 102104361 to 102104373 12 + TSS region transcription start site region 133330
Tssr133331 15 102104376 to 102104388 12 + TSS region transcription start site region 133331
Tssr133332 15 102104389 to 102104418 29 + TSS region transcription start site region 133332
Tssr133333 15 102104506 to 102104520 14 + TSS region transcription start site region 133333
Tssr133334 15 102104530 to 102104539 9 + TSS region transcription start site region 133334
Tssr133335 15 102104588 to 102104601 13 + TSS region transcription start site region 133335
Tssr133336 15 102106150 to 102106163 13 + TSS region transcription start site region 133336
Cpgi7799 15 102106598 to 102107392 794 CpG island CpG island 7799
Tssr133337 15 102113025 to 102113061 36 + TSS region transcription start site region 133337
Spryd3 15 102116528 to 102136234 19706 - protein coding gene SPRY domain containing 3
Tssr136649 15 102118946 to 102118975 29 - TSS region transcription start site region 136649
Tssr133338 15 102119074 to 102119093 19 + TSS region transcription start site region 133338
Cpgi7800 15 102135720 to 102136683 963 CpG island CpG island 7800
Tssr136650 15 102136177 to 102136222 45 - TSS region transcription start site region 136650
Tssr136651 15 102136225 to 102136230 5 - TSS region transcription start site region 136651
Tssr133339 15 102136265 to 102136271 6 + TSS region transcription start site region 133339
Igfbp6 15 102144362 to 102149511 5149 + protein coding gene insulin-like growth factor binding protein 6
Tssr133340 15 102144467 to 102144486 19 + TSS region transcription start site region 133340
Tssr133341 15 102144496 to 102144514 18 + TSS region transcription start site region 133341
Cpgi7801 15 102144499 to 102144920 421 CpG island CpG island 7801
Tssr133342 15 102144689 to 102144698 9 + TSS region transcription start site region 133342
Tssr133343 15 102144715 to 102144727 12 + TSS region transcription start site region 133343
Tssr133344 15 102147875 to 102147901 26 + TSS region transcription start site region 133344
Tssr133345 15 102150361 to 102150376 15 + TSS region transcription start site region 133345
Tssr133346 15 102150382 to 102150393 11 + TSS region transcription start site region 133346
Tssr133347 15 102150405 to 102150418 13 + TSS region transcription start site region 133347
Tssr133348 15 102150502 to 102150577 75 + TSS region transcription start site region 133348
Soat2 15 102150526 to 102163469 12943 + protein coding gene sterol O-acyltransferase 2
Tssr4737 15 102150578 to 102150581 3 + TSS region transcription start site region 4737
Tssr133349 15 102150590 to 102150601 11 + TSS region transcription start site region 133349
Tssr133350 15 102151046 to 102151059 13 + TSS region transcription start site region 133350
Tssr133351 15 102151078 to 102151098 20 + TSS region transcription start site region 133351
Tssr133352 15 102151108 to 102151124 16 + TSS region transcription start site region 133352
Cpgi7802 15 102156856 to 102157223 367 CpG island CpG island 7802
Cpgi7803 15 102160459 to 102160701 242 CpG island CpG island 7803
D15Mit246 15 102165961 to 102166079 118 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 246
Csad 15 102176999 to 102204724 27725 - protein coding gene cysteine sulfinic acid decarboxylase
Tssr133353 15 102177318 to 102177321 3 + TSS region transcription start site region 133353
Tssr136652 15 102188934 to 102188951 17 - TSS region transcription start site region 136652
Tssr136653 15 102188952 to 102188971 19 - TSS region transcription start site region 136653
Tssr136654 15 102188983 to 102188996 13 - TSS region transcription start site region 136654
Tssr136655 15 102189005 to 102189030 25 - TSS region transcription start site region 136655
Tssr136656 15 102189032 to 102189050 18 - TSS region transcription start site region 136656
Tssr136657 15 102196546 to 102196550 4 - TSS region transcription start site region 136657
Cpgi7804 15 102203003 to 102204535 1532 CpG island CpG island 7804
Tssr133354 15 102203177 to 102203218 41 + TSS region transcription start site region 133354
Tssr136658 15 102203400 to 102203443 43 - TSS region transcription start site region 136658
Tssr133355 15 102203480 to 102203538 58 + TSS region transcription start site region 133355
Tssr133356 15 102203639 to 102203693 54 + TSS region transcription start site region 133356
Zfp740 15 102203645 to 102215610 11965 + protein coding gene zinc finger protein 740
Tssr136659 15 102203853 to 102203909 56 - TSS region transcription start site region 136659
Tssr133357 15 102204015 to 102204075 60 + TSS region transcription start site region 133357
Tssr133358 15 102204079 to 102204118 39 + TSS region transcription start site region 133358
Tssr136660 15 102204191 to 102204221 30 - TSS region transcription start site region 136660
Tssr136661 15 102204227 to 102204268 41 - TSS region transcription start site region 136661
Tssr136662 15 102204274 to 102204290 16 - TSS region transcription start site region 136662
Tssr136663 15 102215782 to 102215786 4 - TSS region transcription start site region 136663
Itgb7 15 102215995 to 102231944 15949 - protein coding gene integrin beta 7
Cpgi7805 15 102224307 to 102225342 1035 CpG island CpG island 7805
Tssr136664 15 102224460 to 102224465 5 - TSS region transcription start site region 136664
Tssr136665 15 102224493 to 102224503 10 - TSS region transcription start site region 136665
Tssr133359 15 102224714 to 102224717 3 + TSS region transcription start site region 133359
Tssr136666 15 102231895 to 102231917 22 - TSS region transcription start site region 136666
Tssr136667 15 102231920 to 102231941 21 - TSS region transcription start site region 136667
Tssr133360 15 102234199 to 102234234 35 + TSS region transcription start site region 133360
Rarg 15 102234938 to 102257517 22579 - protein coding gene retinoic acid receptor, gamma
Tssr136668 15 102243262 to 102243280 18 - TSS region transcription start site region 136668
Tssr133361 15 102243484 to 102243501 17 + TSS region transcription start site region 133361
Tssr136669 15 102244762 to 102244767 5 - TSS region transcription start site region 136669
Cpgi7806 15 102246043 to 102248232 2189 CpG island CpG island 7806
Tssr136670 15 102246221 to 102246248 27 - TSS region transcription start site region 136670
Tssr136671 15 102246255 to 102246273 18 - TSS region transcription start site region 136671
Tssr136672 15 102246304 to 102246326 22 - TSS region transcription start site region 136672
Tssr136673 15 102246337 to 102246363 26 - TSS region transcription start site region 136673
Tssr136674 15 102246439 to 102246510 71 - TSS region transcription start site region 136674
Tssr136675 15 102248037 to 102248061 24 - TSS region transcription start site region 136675
Tssr136676 15 102249089 to 102249092 3 - TSS region transcription start site region 136676
Tssr136677 15 102252612 to 102252628 16 - TSS region transcription start site region 136677
Cpgi7807 15 102256976 to 102257729 753 CpG island CpG island 7807
Tssr136678 15 102257306 to 102257370 64 - TSS region transcription start site region 136678
Tssr136679 15 102257379 to 102257417 38 - TSS region transcription start site region 136679
Tssr136680 15 102257449 to 102257496 47 - TSS region transcription start site region 136680
Tssr133362 15 102270540 to 102270580 40 + TSS region transcription start site region 133362
Gm9918 15 102270563 to 102274121 3558 + protein coding gene predicted gene 9918
Cpgi7808 15 102270767 to 102271058 291 CpG island CpG island 7808
Cpgi7809 15 102279051 to 102280101 1050 CpG island CpG island 7809
Tssr136681 15 102279359 to 102279375 16 - TSS region transcription start site region 136681
Tssr133363 15 102279430 to 102279445 15 + TSS region transcription start site region 133363
Tssr133364 15 102279446 to 102279475 29 + TSS region transcription start site region 133364
Mfsd5 15 102279456 to 102281744 2288 + protein coding gene major facilitator superfamily domain containing 5
Tssr133365 15 102279481 to 102279488 7 + TSS region transcription start site region 133365
Tssr133366 15 102279495 to 102279548 53 + TSS region transcription start site region 133366
Tssr133367 15 102279553 to 102279572 19 + TSS region transcription start site region 133367
Tssr133368 15 102279730 to 102279764 34 + TSS region transcription start site region 133368
Tssr133369 15 102280503 to 102280529 26 + TSS region transcription start site region 133369
Gm49479 15 102295437 to 102296151 714 - bidirectional promoter lncRNA gene predicted gene, 49479
Cpgi7810 15 102296067 to 102296648 581 CpG island CpG island 7810
Tssr133370 15 102296256 to 102296330 74 + TSS region transcription start site region 133370
Espl1 15 102296266 to 102324357 28091 + protein coding gene extra spindle pole bodies 1, separase
Tssr133371 15 102296407 to 102296408 1 + TSS region transcription start site region 133371
Tssr133372 15 102296414 to 102296427 13 + TSS region transcription start site region 133372
Tssr133373 15 102300384 to 102300388 4 + TSS region transcription start site region 133373
Gm49480 15 102308621 to 102308762 141 - pseudogene predicted gene, 49480
Tssr4738 15 102315411 to 102315426 15 + TSS region transcription start site region 4738
Cpgi7811 15 102325989 to 102326596 607 CpG island CpG island 7811
Pfdn5 15 102326116 to 102331490 5374 + protein coding gene prefoldin 5
Tssr133374 15 102326132 to 102326152 20 + TSS region transcription start site region 133374
Tssr133375 15 102326155 to 102326171 16 + TSS region transcription start site region 133375
Tssr133376 15 102326172 to 102326181 9 + TSS region transcription start site region 133376
Tssr133377 15 102326369 to 102326387 18 + TSS region transcription start site region 133377
Tssr133378 15 102326400 to 102326429 29 + TSS region transcription start site region 133378
Tssr133379 15 102328515 to 102328555 40 + TSS region transcription start site region 133379
Cpgi7812 15 102331582 to 102332249 667 CpG island CpG island 7812
Tssr133380 15 102331700 to 102331777 77 + TSS region transcription start site region 133380
Myg1 15 102331709 to 102338139 6430 + protein coding gene melanocyte proliferating gene 1
Tssr133381 15 102331920 to 102331953 33 + TSS region transcription start site region 133381
Tssr133382 15 102331960 to 102331991 31 + TSS region transcription start site region 133382
Aaas 15 102338247 to 102350759 12512 - protein coding gene achalasia, adrenocortical insufficiency, alacrimia
Cpgi7813 15 102350339 to 102350970 631 CpG island CpG island 7813
Tssr136682 15 102350593 to 102350605 12 - TSS region transcription start site region 136682
Tssr136683 15 102350634 to 102350690 56 - TSS region transcription start site region 136683
Tssr136684 15 102350692 to 102350771 79 - TSS region transcription start site region 136684
Gm36246 15 102350827 to 102355139 4312 + bidirectional promoter lncRNA gene predicted gene, 36246
Cpgi7814 15 102355247 to 102356384 1137 CpG island CpG island 7814
Sp7 15 102356606 to 102367040 10434 - protein coding gene Sp7 transcription factor 7
Cpgi7815 15 102358166 to 102358756 590 CpG island CpG island 7815
Tssr133383 15 102365227 to 102365235 8 + TSS region transcription start site region 133383
Tssr136685 15 102366271 to 102366282 11 - TSS region transcription start site region 136685
Tssr136686 15 102366314 to 102366338 24 - TSS region transcription start site region 136686
Tssr136687 15 102366359 to 102366368 9 - TSS region transcription start site region 136687
Tssr136688 15 102366974 to 102367023 49 - TSS region transcription start site region 136688
Gm23590 15 102373880 to 102373983 103 + snRNA gene predicted gene, 23590
Cpgi7816 15 102376678 to 102377437 759 CpG island CpG island 7816
Tssr133384 15 102376954 to 102376974 20 + TSS region transcription start site region 133384
Tssr133385 15 102386923 to 102386934 11 + TSS region transcription start site region 133385
Tssr133386 15 102391142 to 102391173 31 + TSS region transcription start site region 133386
Tssr133387 15 102392802 to 102392815 13 + TSS region transcription start site region 133387
Tssr133388 15 102392934 to 102392958 24 + TSS region transcription start site region 133388
Tssr133389 15 102393787 to 102393801 14 + TSS region transcription start site region 133389
Tssr133390 15 102394086 to 102394114 28 + TSS region transcription start site region 133390