Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:101271509-101711514

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr4a1 15 101254269 to 101274795 20526 + protein coding gene nuclear receptor subfamily 4, group A, member 1
Tssr133249 15 101271734 to 101271749 15 + TSS region transcription start site region 133249
Tssr133250 15 101271768 to 101271779 11 + TSS region transcription start site region 133250
Tssr133251 15 101271799 to 101271813 14 + TSS region transcription start site region 133251
Tssr133252 15 101272146 to 101272156 10 + TSS region transcription start site region 133252
Tssr133253 15 101272157 to 101272166 9 + TSS region transcription start site region 133253
Tssr133254 15 101272177 to 101272202 25 + TSS region transcription start site region 133254
Tssr133255 15 101272210 to 101272234 24 + TSS region transcription start site region 133255
Tssr133256 15 101272251 to 101272264 13 + TSS region transcription start site region 133256
Tssr133257 15 101272269 to 101272277 8 + TSS region transcription start site region 133257
Tssr133258 15 101272721 to 101272736 15 + TSS region transcription start site region 133258
Tssr133259 15 101272738 to 101272743 5 + TSS region transcription start site region 133259
Tssr133260 15 101272756 to 101272763 7 + TSS region transcription start site region 133260
Tssr133261 15 101272766 to 101272773 7 + TSS region transcription start site region 133261
Tssr133262 15 101272777 to 101272785 8 + TSS region transcription start site region 133262
Tssr133263 15 101272798 to 101272809 11 + TSS region transcription start site region 133263
Tssr133264 15 101272817 to 101272826 9 + TSS region transcription start site region 133264
Tssr133265 15 101273026 to 101273039 13 + TSS region transcription start site region 133265
Tssr133266 15 101273051 to 101273058 7 + TSS region transcription start site region 133266
Tssr133267 15 101273092 to 101273100 8 + TSS region transcription start site region 133267
Tssr133268 15 101273139 to 101273157 18 + TSS region transcription start site region 133268
Tssr133269 15 101273311 to 101273316 5 + TSS region transcription start site region 133269
Tssr133270 15 101273973 to 101273983 10 + TSS region transcription start site region 133270
Tssr133271 15 101274022 to 101274033 11 + TSS region transcription start site region 133271
Tssr133272 15 101274082 to 101274087 5 + TSS region transcription start site region 133272
Tssr133273 15 101274121 to 101274131 10 + TSS region transcription start site region 133273
Tssr133274 15 101274188 to 101274199 11 + TSS region transcription start site region 133274
Tssr136552 15 101274371 to 101274381 10 - TSS region transcription start site region 136552
Tssr133275 15 101274438 to 101274447 9 + TSS region transcription start site region 133275
Tssr133276 15 101274600 to 101274610 10 + TSS region transcription start site region 133276
Tssr133277 15 101274682 to 101274689 7 + TSS region transcription start site region 133277
Tssr136553 15 101274785 to 101274791 6 - TSS region transcription start site region 136553
Cpgi7778 15 101283714 to 101284594 880 CpG island CpG island 7778
Tssr4728 15 101284176 to 101284178 2 + TSS region transcription start site region 4728
Tssr133278 15 101284280 to 101284308 28 + TSS region transcription start site region 133278
Atg101 15 101284301 to 101290947 6646 + protein coding gene autophagy related 101
Tssr133279 15 101286614 to 101286625 11 + TSS region transcription start site region 133279
Tssr133280 15 101293196 to 101293209 13 + TSS region transcription start site region 133280
Smim41 15 101293212 to 101297426 4214 + lincRNA gene small integral membrane protein 41
Tssr133281 15 101293218 to 101293237 19 + TSS region transcription start site region 133281
Tssr133282 15 101293466 to 101293480 14 + TSS region transcription start site region 133282
Gm41403 15 101297425 to 101298609 1184 - lncRNA gene predicted gene, 41403
Tssr133283 15 101316097 to 101316110 13 + TSS region transcription start site region 133283
Gm49499 15 101316102 to 101318538 2436 + unclassified gene predicted gene, 49499
Tssr133284 15 101322883 to 101322916 33 + TSS region transcription start site region 133284
Del(15Krt80-Krt18)1Tmm 15 101348315 to 102032026 683711 chromosomal deletion deletion, Chr 15, Thomas M Magin 1
Krt80 15 101348315 to 101370125 21810 - protein coding gene keratin 80
Tssr136554 15 101349447 to 101349452 5 - TSS region transcription start site region 136554
D15Mit173 15 101350617 to 101350765 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 173
Tssr136555 15 101351274 to 101351283 9 - TSS region transcription start site region 136555
Gm35853 15 101358708 to 101405857 47149 + antisense lncRNA gene predicted gene, 35853
Tssr136556 15 101364531 to 101364566 35 - TSS region transcription start site region 136556
Tssr136557 15 101364572 to 101364585 13 - TSS region transcription start site region 136557
Tssr136558 15 101364589 to 101364619 30 - TSS region transcription start site region 136558
Tssr133285 15 101364762 to 101364768 6 + TSS region transcription start site region 133285
Mir1941 15 101369352 to 101369434 82 + miRNA gene microRNA 1941
Tssr136559 15 101370156 to 101370169 13 - TSS region transcription start site region 136559
Tssr133286 15 101373326 to 101373335 9 + TSS region transcription start site region 133286
Tssr133287 15 101373339 to 101373358 19 + TSS region transcription start site region 133287
Tssr133288 15 101373645 to 101373679 34 + TSS region transcription start site region 133288
Tssr136560 15 101373732 to 101373733 1 - TSS region transcription start site region 136560
Tssr136561 15 101374994 to 101375009 15 - TSS region transcription start site region 136561
Gm671 15 101395427 to 101412311 16884 - antisense lncRNA gene predicted gene 671
Gm49500 15 101404052 to 101404433 381 - pseudogene predicted gene, 49500
Tssr136562 15 101406676 to 101406681 5 - TSS region transcription start site region 136562
Tssr133289 15 101411053 to 101411095 42 + TSS region transcription start site region 133289
Tssr133290 15 101411120 to 101411138 18 + TSS region transcription start site region 133290
Cpgi7779 15 101412217 to 101412863 646 CpG island CpG island 7779
Tssr136563 15 101412286 to 101412312 26 - TSS region transcription start site region 136563
Krt7 15 101412403 to 101427806 15403 + protein coding gene keratin 7
Tssr133291 15 101412417 to 101412433 16 + TSS region transcription start site region 133291
Tssr133292 15 101415107 to 101415150 43 + TSS region transcription start site region 133292
Tssr136564 15 101418348 to 101418367 19 - TSS region transcription start site region 136564
Tssr136565 15 101418371 to 101418397 26 - TSS region transcription start site region 136565
Tssr133293 15 101419612 to 101419624 12 + TSS region transcription start site region 133293
Tssr133294 15 101420505 to 101420518 13 + TSS region transcription start site region 133294
Tssr133295 15 101427610 to 101427621 11 + TSS region transcription start site region 133295
Tssr133296 15 101427689 to 101427708 19 + TSS region transcription start site region 133296
Tssr136566 15 101427784 to 101427807 23 - TSS region transcription start site region 136566
Krt87 15 101431490 to 101438804 7314 - protein coding gene keratin 87
Cpgi7780 15 101438362 to 101439176 814 CpG island CpG island 7780
Tssr136567 15 101438788 to 101438804 16 - TSS region transcription start site region 136567
Krt88 15 101447744 to 101453907 6163 + protein coding gene keratin 88
Tssr133297 15 101447759 to 101447760 1 + TSS region transcription start site region 133297
Tssr133298 15 101447762 to 101447804 42 + TSS region transcription start site region 133298
Tssr133299 15 101447805 to 101447814 9 + TSS region transcription start site region 133299
Krt81 15 101459061 to 101463751 4690 - protein coding gene keratin 81
Tssr136568 15 101463758 to 101463770 12 - TSS region transcription start site region 136568
Tssr4729 15 101469372 to 101469381 9 + TSS region transcription start site region 4729
Tssr133300 15 101469396 to 101469411 15 + TSS region transcription start site region 133300
Tssr133301 15 101469443 to 101469452 9 + TSS region transcription start site region 133301
Tssr133302 15 101473472 to 101473478 6 + TSS region transcription start site region 133302
Krt86 15 101473478 to 101479983 6505 + protein coding gene keratin 86
Cpgi7781 15 101479175 to 101479661 486 CpG island CpG island 7781
Gm49501 15 101480296 to 101483312 3016 + lincRNA gene predicted gene, 49501
Krt83 15 101485130 to 101491512 6382 - protein coding gene keratin 83
Tssr4730 15 101485192 to 101485233 41 + TSS region transcription start site region 4730
Tssr136569 15 101488095 to 101488112 17 - TSS region transcription start site region 136569
Tssr136570 15 101488113 to 101488121 8 - TSS region transcription start site region 136570
Tssr136571 15 101488211 to 101488220 9 - TSS region transcription start site region 136571
Tssr136572 15 101488295 to 101488313 18 - TSS region transcription start site region 136572
Tssr136573 15 101491509 to 101491514 5 - TSS region transcription start site region 136573
Gm49423 15 101503715 to 101503901 186 + pseudogene predicted gene, 49423
Gm6042 15 101503816 to 101506313 2497 + pseudogene predicted gene 6042
Gm49424 15 101506091 to 101506250 159 + pseudogene predicted gene, 49424
Gm49425 15 101515920 to 101517261 1341 - protein coding gene predicted gene, 49425
Krt84 15 101525026 to 101532820 7794 - protein coding gene keratin 84
Tssr136574 15 101531130 to 101531138 8 - TSS region transcription start site region 136574
Tssr136575 15 101532819 to 101532824 5 - TSS region transcription start site region 136575
Krt82 15 101541216 to 101550659 9443 - protein coding gene keratin 82
Tssr136576 15 101550657 to 101550665 8 - TSS region transcription start site region 136576
Krt90 15 101552356 to 101562950 10594 - protein coding gene keratin 90
Cpgi7782 15 101553104 to 101553324 220 CpG island CpG island 7782
Gm44393 15 101557197 to 101557334 137 + miRNA gene predicted gene, 44393
Tssr136577 15 101558399 to 101558422 23 - TSS region transcription start site region 136577
Tssr136578 15 101562889 to 101562892 3 - TSS region transcription start site region 136578
Krt75 15 101563345 to 101573904 10559 - protein coding gene keratin 75
Gm44460 15 101570183 to 101570311 128 + miRNA gene predicted gene, 44460
Cpgi7783 15 101573663 to 101573883 220 CpG island CpG island 7783
Tssr136579 15 101573863 to 101573870 7 - TSS region transcription start site region 136579
Tssr136580 15 101573883 to 101573913 30 - TSS region transcription start site region 136580
Gm5476 15 101587334 to 101588543 1209 - pseudogene predicted gene 5476
Cpgi7784 15 101588176 to 101588330 154 CpG island CpG island 7784
Gm5477 15 101608874 to 101610479 1605 + pseudogene predicted gene 5477
Gm49426 15 101615297 to 101615407 110 - pseudogene predicted gene, 49426
Gm5414 15 101624028 to 101628188 4160 - protein coding gene predicted gene 5414
Tssr136581 15 101628248 to 101628252 4 - TSS region transcription start site region 136581
Gm17851 15 101638681 to 101639998 1317 + pseudogene predicted gene, 17851
Gm5478 15 101643020 to 101647380 4360 - pseudogene predicted pseudogene 5478
Gm44479 15 101645144 to 101645259 115 + miRNA gene predicted gene, 44479
Krt6b 15 101676023 to 101680287 4264 - protein coding gene keratin 6B
Tssr136582 15 101676085 to 101676103 18 - TSS region transcription start site region 136582
Tssr136583 15 101676280 to 101676288 8 - TSS region transcription start site region 136583
Tssr136584 15 101676447 to 101676466 19 - TSS region transcription start site region 136584
Tssr133303 15 101676532 to 101676543 11 + TSS region transcription start site region 133303
Gm44383 15 101678032 to 101678160 128 + miRNA gene predicted gene, 44383
Tssr136585 15 101680281 to 101680298 17 - TSS region transcription start site region 136585
Krt6a 15 101689928 to 101694305 4377 - protein coding gene keratin 6A
Tssr136586 15 101689956 to 101689989 33 - TSS region transcription start site region 136586
Tssr136587 15 101690204 to 101690212 8 - TSS region transcription start site region 136587
Gm49428 15 101690309 to 101691941 1632 + antisense lncRNA gene predicted gene, 49428
Tssr136588 15 101690378 to 101690392 14 - TSS region transcription start site region 136588
Tssr133304 15 101690463 to 101690482 19 + TSS region transcription start site region 133304
Tssr136589 15 101690500 to 101690501 1 - TSS region transcription start site region 136589
Tssr136590 15 101690508 to 101690514 6 - TSS region transcription start site region 136590
Gm44342 15 101692211 to 101692339 128 + miRNA gene predicted gene, 44342
Tssr136591 15 101692567 to 101692575 8 - TSS region transcription start site region 136591
Tssr136592 15 101693846 to 101693880 34 - TSS region transcription start site region 136592
Tssr136593 15 101694299 to 101694318 19 - TSS region transcription start site region 136593
Krt5 15 101707070 to 101712891 5821 - protein coding gene keratin 5
Tssr136594 15 101707427 to 101707445 18 - TSS region transcription start site region 136594
Tssr136595 15 101707549 to 101707563 14 - TSS region transcription start site region 136595
Tssr136596 15 101707581 to 101707593 12 - TSS region transcription start site region 136596
Tssr136597 15 101709613 to 101709627 14 - TSS region transcription start site region 136597
Tssr136598 15 101709648 to 101709663 15 - TSS region transcription start site region 136598
Tssr136599 15 101709716 to 101709753 37 - TSS region transcription start site region 136599
Tssr136600 15 101709837 to 101709856 19 - TSS region transcription start site region 136600
Gm44323 15 101710274 to 101710402 128 + miRNA gene predicted gene, 44323