Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:100564827-100674840

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pou6f1 15 100575318 to 100599984 24666 - protein coding gene POU domain, class 6, transcription factor 1
Tssr136436 15 100580204 to 100580236 32 - TSS region transcription start site region 136436
Tssr136437 15 100591684 to 100591690 6 - TSS region transcription start site region 136437
Gm27209 15 100595416 to 100597293 1877 + antisense lncRNA gene predicted gene 27209
Tssr133133 15 100598967 to 100599015 48 + TSS region transcription start site region 133133
Cpgi7742 15 100599132 to 100600648 1516 CpG island CpG island 7742
Tssr133134 15 100599722 to 100599747 25 + TSS region transcription start site region 133134
Tssr133135 15 100599750 to 100599767 17 + TSS region transcription start site region 133135
Tssr133136 15 100599772 to 100599793 21 + TSS region transcription start site region 133136
Tssr136438 15 100599962 to 100599979 17 - TSS region transcription start site region 136438
Tssr136439 15 100599983 to 100600039 56 - TSS region transcription start site region 136439
Gm49492 15 100600204 to 100602766 2562 + bidirectional promoter lncRNA gene predicted gene, 49492
Tssr133137 15 100601977 to 100601981 4 + TSS region transcription start site region 133137
1110013H19Rik 15 100613173 to 100613843 670 - lincRNA gene RIKEN cDNA 1110013H19 gene
Cpgi7743 15 100613581 to 100613764 183 CpG island CpG island 7743
C330013E15Rik 15 100614140 to 100615110 970 - bidirectional promoter lncRNA gene RIKEN cDNA C330013E15 gene
Cpgi7744 15 100614391 to 100616573 2182 CpG island CpG island 7744
Tssr136440 15 100615071 to 100615124 53 - TSS region transcription start site region 136440
Tssr133138 15 100615620 to 100615677 57 + TSS region transcription start site region 133138
Dazap2 15 100615662 to 100620761 5099 + protein coding gene DAZ associated protein 2
Tssr136441 15 100615920 to 100615938 18 - TSS region transcription start site region 136441
Tssr133139 15 100616042 to 100616109 67 + TSS region transcription start site region 133139
Tssr133140 15 100616276 to 100616305 29 + TSS region transcription start site region 133140
Tssr133141 15 100616319 to 100616339 20 + TSS region transcription start site region 133141
Tssr133142 15 100616902 to 100616925 23 + TSS region transcription start site region 133142
Tssr133143 15 100619516 to 100619532 16 + TSS region transcription start site region 133143
Tssr133144 15 100619670 to 100619688 18 + TSS region transcription start site region 133144
Tssr133145 15 100619728 to 100619762 34 + TSS region transcription start site region 133145
Tssr133146 15 100619827 to 100619840 13 + TSS region transcription start site region 133146
Tssr133147 15 100619853 to 100619897 44 + TSS region transcription start site region 133147
Tssr133148 15 100619899 to 100619912 13 + TSS region transcription start site region 133148
Tssr133149 15 100619964 to 100620007 43 + TSS region transcription start site region 133149
Tssr136442 15 100620021 to 100620043 22 - TSS region transcription start site region 136442
Tssr133150 15 100620029 to 100620059 30 + TSS region transcription start site region 133150
Smagp 15 100621339 to 100636940 15601 - protein coding gene small cell adhesion glycoprotein
Cpgi7745 15 100636105 to 100637418 1313 CpG island CpG island 7745
Tssr136443 15 100636703 to 100636735 32 - TSS region transcription start site region 136443
Tssr136444 15 100636742 to 100636777 35 - TSS region transcription start site region 136444
Tssr136445 15 100636833 to 100636848 15 - TSS region transcription start site region 136445
Tssr136446 15 100636853 to 100636900 47 - TSS region transcription start site region 136446
Tssr136447 15 100636992 to 100637002 10 - TSS region transcription start site region 136447
Tssr136448 15 100637068 to 100637082 14 - TSS region transcription start site region 136448
Tssr136449 15 100637084 to 100637107 23 - TSS region transcription start site region 136449
Tssr136450 15 100637109 to 100637155 46 - TSS region transcription start site region 136450
Tssr136451 15 100637270 to 100637281 11 - TSS region transcription start site region 136451
Bin2 15 100641077 to 100669553 28476 - protein coding gene bridging integrator 2
Tssr133151 15 100641210 to 100641245 35 + TSS region transcription start site region 133151
Tssr136452 15 100641459 to 100641482 23 - TSS region transcription start site region 136452
Tssr136453 15 100641511 to 100641521 10 - TSS region transcription start site region 136453
Tssr136454 15 100644912 to 100644938 26 - TSS region transcription start site region 136454
Tssr136455 15 100644940 to 100644957 17 - TSS region transcription start site region 136455
Tssr136456 15 100645024 to 100645035 11 - TSS region transcription start site region 136456
Mir6961 15 100649163 to 100649229 66 - miRNA gene microRNA 6961
Tssr133152 15 100665297 to 100665310 13 + TSS region transcription start site region 133152
Tssr136457 15 100667604 to 100667605 1 - TSS region transcription start site region 136457
Cpgi7746 15 100669165 to 100669641 476 CpG island CpG island 7746
Tssr136458 15 100669496 to 100669511 15 - TSS region transcription start site region 136458
Tssr136459 15 100669512 to 100669529 17 - TSS region transcription start site region 136459
Tssr136460 15 100669535 to 100669560 25 - TSS region transcription start site region 136460
Tssr133153 15 100674419 to 100674431 12 + TSS region transcription start site region 133153
Cela1 15 100674422 to 100687920 13498 - protein coding gene chymotrypsin-like elastase family, member 1
Tssr4720 15 100674466 to 100674467 1 - TSS region transcription start site region 4720
Tssr136461 15 100674471 to 100674496 25 - TSS region transcription start site region 136461
Tssr136462 15 100674570 to 100674588 18 - TSS region transcription start site region 136462
Tssr136463 15 100674602 to 100674618 16 - TSS region transcription start site region 136463
Tssr133154 15 100674605 to 100674633 28 + TSS region transcription start site region 133154
Tssr136464 15 100674657 to 100674659 2 - TSS region transcription start site region 136464
Tssr136465 15 100674673 to 100674682 9 - TSS region transcription start site region 136465
Tssr136466 15 100674706 to 100674717 11 - TSS region transcription start site region 136466
Tssr136467 15 100674718 to 100674720 2 - TSS region transcription start site region 136467