Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:100246582-100596590

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atf1 15 100227859 to 100261248 33389 + protein coding gene activating transcription factor 1
Tssr133107 15 100251678 to 100251703 25 + TSS region transcription start site region 133107
Tssr133108 15 100251708 to 100251724 16 + TSS region transcription start site region 133108
Tssr133109 15 100269183 to 100269190 7 + TSS region transcription start site region 133109
Tssr4717 15 100270088 to 100270103 15 + TSS region transcription start site region 4717
Tssr133110 15 100271685 to 100271696 11 + TSS region transcription start site region 133110
Tssr133111 15 100275991 to 100275998 7 + TSS region transcription start site region 133111
Tssr133112 15 100279951 to 100279955 4 + TSS region transcription start site region 133112
Cpgi7733 15 100280497 to 100281118 621 CpG island CpG island 7733
Tmprss12 15 100280837 to 100293053 12216 + protein coding gene transmembrane (C-terminal) protease, serine 12
Tssr133113 15 100280850 to 100280871 21 + TSS region transcription start site region 133113
Tssr133114 15 100297123 to 100297156 33 + TSS region transcription start site region 133114
Gm33666 15 100297171 to 100297451 280 + pseudogene predicted gene, 33666
Mettl7a1 15 100304145 to 100328665 24520 + protein coding gene methyltransferase like 7A1
Tssr133115 15 100304155 to 100304175 20 + TSS region transcription start site region 133115
Tssr133116 15 100304181 to 100304190 9 + TSS region transcription start site region 133116
Tssr133117 15 100304198 to 100304210 12 + TSS region transcription start site region 133117
Tssr133118 15 100304211 to 100304222 11 + TSS region transcription start site region 133118
Tssr133119 15 100304227 to 100304243 16 + TSS region transcription start site region 133119
Tssr133120 15 100304782 to 100304848 66 + TSS region transcription start site region 133120
Cpgi7734 15 100304788 to 100305008 220 CpG island CpG island 7734
Tssr133121 15 100304942 to 100304991 49 + TSS region transcription start site region 133121
Tssr4718 15 100306873 to 100306905 32 + TSS region transcription start site region 4718
Tssr4719 15 100313913 to 100313926 13 + TSS region transcription start site region 4719
Mettl7a3 15 100334929 to 100340375 5446 + protein coding gene methyltransferase like 7A3
Tssr133122 15 100345763 to 100345783 20 + TSS region transcription start site region 133122
0610039G09Rik 15 100345772 to 100346367 595 unclassified gene RIKEN cDNA 0610039G09 gene
Methig1 15 100353200 to 100384435 31235 + protein coding gene methyltransferase hypoxia inducible domain containing 1
Mettl7a2 15 100353200 to 100361819 8619 + protein coding gene methyltransferase like 7A2
Tssr133123 15 100364563 to 100364573 10 + TSS region transcription start site region 133123
Higd1c 15 100364585 to 100383955 19370 + protein coding gene HIG1 domain family, member 1C
Slc11a2 15 100387898 to 100424214 36316 - protein coding gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
Tssr136414 15 100403258 to 100403270 12 - TSS region transcription start site region 136414
Tssr136415 15 100403334 to 100403344 10 - TSS region transcription start site region 136415
Tssr136416 15 100403382 to 100403400 18 - TSS region transcription start site region 136416
Tssr136417 15 100403408 to 100403428 20 - TSS region transcription start site region 136417
Tssr136418 15 100403437 to 100403456 19 - TSS region transcription start site region 136418
Tssr136419 15 100410159 to 100410167 8 - TSS region transcription start site region 136419
Tssr136420 15 100415744 to 100415759 15 - TSS region transcription start site region 136420
Tssr136421 15 100415790 to 100415801 11 - TSS region transcription start site region 136421
Tssr136422 15 100418105 to 100418111 6 - TSS region transcription start site region 136422
Tssr133124 15 100421582 to 100421590 8 + TSS region transcription start site region 133124
Tssr133125 15 100421671 to 100421683 12 + TSS region transcription start site region 133125
Cpgi7735 15 100422256 to 100423584 1328 CpG island CpG island 7735
Tssr136423 15 100422991 to 100423039 48 - TSS region transcription start site region 136423
Tssr136424 15 100423045 to 100423056 11 - TSS region transcription start site region 136424
Gm5475 15 100423193 to 100428150 4957 + protein coding gene predicted gene 5475
Tssr136425 15 100424169 to 100424173 4 - TSS region transcription start site region 136425
Tssr136426 15 100424208 to 100424219 11 - TSS region transcription start site region 136426
Tssr136427 15 100425050 to 100425075 25 - TSS region transcription start site region 136427
Tssr136428 15 100425098 to 100425105 7 - TSS region transcription start site region 136428
Tssr133126 15 100443296 to 100443311 15 + TSS region transcription start site region 133126
Cpgi7736 15 100443521 to 100443784 263 CpG island CpG island 7736
n-R5s43 15 100449684 to 100449793 109 + rRNA gene nuclear encoded rRNA 5S 43
Cpgi7737 15 100457350 to 100457655 305 CpG island CpG island 7737
5330439K02Rik 15 100459740 to 100468691 8951 - bidirectional promoter lncRNA gene RIKEN cDNA 5330439K02 gene
Cpgi7738 15 100461059 to 100461217 158 CpG island CpG island 7738
Tssr133127 15 100461197 to 100461208 11 + TSS region transcription start site region 133127
Cpgi7739 15 100468439 to 100469956 1517 CpG island CpG island 7739
Tssr133128 15 100468975 to 100468993 18 + TSS region transcription start site region 133128
Letmd1 15 100469023 to 100479164 10141 + protein coding gene LETM1 domain containing 1
Tssr133129 15 100469056 to 100469075 19 + TSS region transcription start site region 133129
Tssr133130 15 100469081 to 100469126 45 + TSS region transcription start site region 133130
Tssr133131 15 100469790 to 100469801 11 + TSS region transcription start site region 133131
Tssr133132 15 100478794 to 100478799 5 + TSS region transcription start site region 133132
Csrnp2 15 100479570 to 100495239 15669 - protein coding gene cysteine-serine-rich nuclear protein 2
Tssr136429 15 100480583 to 100480588 5 - TSS region transcription start site region 136429
Tssr136430 15 100486606 to 100486630 24 - TSS region transcription start site region 136430
Tssr136431 15 100491852 to 100491853 1 - TSS region transcription start site region 136431
Cpgi7740 15 100494470 to 100495583 1113 CpG island CpG island 7740
Tssr136432 15 100495055 to 100495057 2 - TSS region transcription start site region 136432
Tssr136433 15 100495251 to 100495267 16 - TSS region transcription start site region 136433
Tfcp2 15 100498012 to 100552008 53996 - protein coding gene transcription factor CP2
Cpgi7741 15 100551216 to 100552332 1116 CpG island CpG island 7741
Tssr136434 15 100551836 to 100551856 20 - TSS region transcription start site region 136434
Tssr136435 15 100551959 to 100552010 51 - TSS region transcription start site region 136435
Pou6f1 15 100575318 to 100599984 24666 - protein coding gene POU domain, class 6, transcription factor 1
Tssr136436 15 100580204 to 100580236 32 - TSS region transcription start site region 136436
Tssr136437 15 100591684 to 100591690 6 - TSS region transcription start site region 136437
Gm27209 15 100595416 to 100597293 1877 + antisense lncRNA gene predicted gene 27209