Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:100234790-100704801

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atf1 15 100227859 to 100261248 33389 + protein coding gene activating transcription factor 1
Tssr133105 15 100246183 to 100246204 21 + TSS region transcription start site region 133105
Tssr133106 15 100246224 to 100246239 15 + TSS region transcription start site region 133106
Tssr133107 15 100251678 to 100251703 25 + TSS region transcription start site region 133107
Tssr133108 15 100251708 to 100251724 16 + TSS region transcription start site region 133108
Tssr133109 15 100269183 to 100269190 7 + TSS region transcription start site region 133109
Tssr4717 15 100270088 to 100270103 15 + TSS region transcription start site region 4717
Tssr133110 15 100271685 to 100271696 11 + TSS region transcription start site region 133110
Tssr133111 15 100275991 to 100275998 7 + TSS region transcription start site region 133111
Tssr133112 15 100279951 to 100279955 4 + TSS region transcription start site region 133112
Cpgi7733 15 100280497 to 100281118 621 CpG island CpG island 7733
Tmprss12 15 100280837 to 100293053 12216 + protein coding gene transmembrane (C-terminal) protease, serine 12
Tssr133113 15 100280850 to 100280871 21 + TSS region transcription start site region 133113
Tssr133114 15 100297123 to 100297156 33 + TSS region transcription start site region 133114
Gm33666 15 100297171 to 100297451 280 + pseudogene predicted gene, 33666
Mettl7a1 15 100304145 to 100328665 24520 + protein coding gene methyltransferase like 7A1
Tssr133115 15 100304155 to 100304175 20 + TSS region transcription start site region 133115
Tssr133116 15 100304181 to 100304190 9 + TSS region transcription start site region 133116
Tssr133117 15 100304198 to 100304210 12 + TSS region transcription start site region 133117
Tssr133118 15 100304211 to 100304222 11 + TSS region transcription start site region 133118
Tssr133119 15 100304227 to 100304243 16 + TSS region transcription start site region 133119
Tssr133120 15 100304782 to 100304848 66 + TSS region transcription start site region 133120
Cpgi7734 15 100304788 to 100305008 220 CpG island CpG island 7734
Tssr133121 15 100304942 to 100304991 49 + TSS region transcription start site region 133121
Tssr4718 15 100306873 to 100306905 32 + TSS region transcription start site region 4718
Tssr4719 15 100313913 to 100313926 13 + TSS region transcription start site region 4719
Mettl7a3 15 100334929 to 100340375 5446 + protein coding gene methyltransferase like 7A3
Tssr133122 15 100345763 to 100345783 20 + TSS region transcription start site region 133122
0610039G09Rik 15 100345772 to 100346367 595 unclassified gene RIKEN cDNA 0610039G09 gene
Methig1 15 100353200 to 100384435 31235 + protein coding gene methyltransferase hypoxia inducible domain containing 1
Mettl7a2 15 100353200 to 100361819 8619 + protein coding gene methyltransferase like 7A2
Tssr133123 15 100364563 to 100364573 10 + TSS region transcription start site region 133123
Higd1c 15 100364585 to 100383955 19370 + protein coding gene HIG1 domain family, member 1C
Slc11a2 15 100387898 to 100424214 36316 - protein coding gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
Tssr136414 15 100403258 to 100403270 12 - TSS region transcription start site region 136414
Tssr136415 15 100403334 to 100403344 10 - TSS region transcription start site region 136415
Tssr136416 15 100403382 to 100403400 18 - TSS region transcription start site region 136416
Tssr136417 15 100403408 to 100403428 20 - TSS region transcription start site region 136417
Tssr136418 15 100403437 to 100403456 19 - TSS region transcription start site region 136418
Tssr136419 15 100410159 to 100410167 8 - TSS region transcription start site region 136419
Tssr136420 15 100415744 to 100415759 15 - TSS region transcription start site region 136420
Tssr136421 15 100415790 to 100415801 11 - TSS region transcription start site region 136421
Tssr136422 15 100418105 to 100418111 6 - TSS region transcription start site region 136422
Tssr133124 15 100421582 to 100421590 8 + TSS region transcription start site region 133124
Tssr133125 15 100421671 to 100421683 12 + TSS region transcription start site region 133125
Cpgi7735 15 100422256 to 100423584 1328 CpG island CpG island 7735
Tssr136423 15 100422991 to 100423039 48 - TSS region transcription start site region 136423
Tssr136424 15 100423045 to 100423056 11 - TSS region transcription start site region 136424
Gm5475 15 100423193 to 100428150 4957 + protein coding gene predicted gene 5475
Tssr136425 15 100424169 to 100424173 4 - TSS region transcription start site region 136425
Tssr136426 15 100424208 to 100424219 11 - TSS region transcription start site region 136426
Tssr136427 15 100425050 to 100425075 25 - TSS region transcription start site region 136427
Tssr136428 15 100425098 to 100425105 7 - TSS region transcription start site region 136428
Tssr133126 15 100443296 to 100443311 15 + TSS region transcription start site region 133126
Cpgi7736 15 100443521 to 100443784 263 CpG island CpG island 7736
n-R5s43 15 100449684 to 100449793 109 + rRNA gene nuclear encoded rRNA 5S 43
Cpgi7737 15 100457350 to 100457655 305 CpG island CpG island 7737
5330439K02Rik 15 100459740 to 100468691 8951 - bidirectional promoter lncRNA gene RIKEN cDNA 5330439K02 gene
Cpgi7738 15 100461059 to 100461217 158 CpG island CpG island 7738
Tssr133127 15 100461197 to 100461208 11 + TSS region transcription start site region 133127
Cpgi7739 15 100468439 to 100469956 1517 CpG island CpG island 7739
Tssr133128 15 100468975 to 100468993 18 + TSS region transcription start site region 133128
Letmd1 15 100469023 to 100479164 10141 + protein coding gene LETM1 domain containing 1
Tssr133129 15 100469056 to 100469075 19 + TSS region transcription start site region 133129
Tssr133130 15 100469081 to 100469126 45 + TSS region transcription start site region 133130
Tssr133131 15 100469790 to 100469801 11 + TSS region transcription start site region 133131
Tssr133132 15 100478794 to 100478799 5 + TSS region transcription start site region 133132
Csrnp2 15 100479570 to 100495239 15669 - protein coding gene cysteine-serine-rich nuclear protein 2
Tssr136429 15 100480583 to 100480588 5 - TSS region transcription start site region 136429
Tssr136430 15 100486606 to 100486630 24 - TSS region transcription start site region 136430
Tssr136431 15 100491852 to 100491853 1 - TSS region transcription start site region 136431
Cpgi7740 15 100494470 to 100495583 1113 CpG island CpG island 7740
Tssr136432 15 100495055 to 100495057 2 - TSS region transcription start site region 136432
Tssr136433 15 100495251 to 100495267 16 - TSS region transcription start site region 136433
Tfcp2 15 100498012 to 100552008 53996 - protein coding gene transcription factor CP2
Cpgi7741 15 100551216 to 100552332 1116 CpG island CpG island 7741
Tssr136434 15 100551836 to 100551856 20 - TSS region transcription start site region 136434
Tssr136435 15 100551959 to 100552010 51 - TSS region transcription start site region 136435
Pou6f1 15 100575318 to 100599984 24666 - protein coding gene POU domain, class 6, transcription factor 1
Tssr136436 15 100580204 to 100580236 32 - TSS region transcription start site region 136436
Tssr136437 15 100591684 to 100591690 6 - TSS region transcription start site region 136437
Gm27209 15 100595416 to 100597293 1877 + antisense lncRNA gene predicted gene 27209
Tssr133133 15 100598967 to 100599015 48 + TSS region transcription start site region 133133
Cpgi7742 15 100599132 to 100600648 1516 CpG island CpG island 7742
Tssr133134 15 100599722 to 100599747 25 + TSS region transcription start site region 133134
Tssr133135 15 100599750 to 100599767 17 + TSS region transcription start site region 133135
Tssr133136 15 100599772 to 100599793 21 + TSS region transcription start site region 133136
Tssr136438 15 100599962 to 100599979 17 - TSS region transcription start site region 136438
Tssr136439 15 100599983 to 100600039 56 - TSS region transcription start site region 136439
Gm49492 15 100600204 to 100602766 2562 + bidirectional promoter lncRNA gene predicted gene, 49492
Tssr133137 15 100601977 to 100601981 4 + TSS region transcription start site region 133137
1110013H19Rik 15 100613173 to 100613843 670 - lincRNA gene RIKEN cDNA 1110013H19 gene
Cpgi7743 15 100613581 to 100613764 183 CpG island CpG island 7743
C330013E15Rik 15 100614140 to 100615110 970 - bidirectional promoter lncRNA gene RIKEN cDNA C330013E15 gene
Cpgi7744 15 100614391 to 100616573 2182 CpG island CpG island 7744
Tssr136440 15 100615071 to 100615124 53 - TSS region transcription start site region 136440
Tssr133138 15 100615620 to 100615677 57 + TSS region transcription start site region 133138
Dazap2 15 100615662 to 100620761 5099 + protein coding gene DAZ associated protein 2
Tssr136441 15 100615920 to 100615938 18 - TSS region transcription start site region 136441
Tssr133139 15 100616042 to 100616109 67 + TSS region transcription start site region 133139
Tssr133140 15 100616276 to 100616305 29 + TSS region transcription start site region 133140
Tssr133141 15 100616319 to 100616339 20 + TSS region transcription start site region 133141
Tssr133142 15 100616902 to 100616925 23 + TSS region transcription start site region 133142
Tssr133143 15 100619516 to 100619532 16 + TSS region transcription start site region 133143
Tssr133144 15 100619670 to 100619688 18 + TSS region transcription start site region 133144
Tssr133145 15 100619728 to 100619762 34 + TSS region transcription start site region 133145
Tssr133146 15 100619827 to 100619840 13 + TSS region transcription start site region 133146
Tssr133147 15 100619853 to 100619897 44 + TSS region transcription start site region 133147
Tssr133148 15 100619899 to 100619912 13 + TSS region transcription start site region 133148
Tssr133149 15 100619964 to 100620007 43 + TSS region transcription start site region 133149
Tssr136442 15 100620021 to 100620043 22 - TSS region transcription start site region 136442
Tssr133150 15 100620029 to 100620059 30 + TSS region transcription start site region 133150
Smagp 15 100621339 to 100636940 15601 - protein coding gene small cell adhesion glycoprotein
Cpgi7745 15 100636105 to 100637418 1313 CpG island CpG island 7745
Tssr136443 15 100636703 to 100636735 32 - TSS region transcription start site region 136443
Tssr136444 15 100636742 to 100636777 35 - TSS region transcription start site region 136444
Tssr136445 15 100636833 to 100636848 15 - TSS region transcription start site region 136445
Tssr136446 15 100636853 to 100636900 47 - TSS region transcription start site region 136446
Tssr136447 15 100636992 to 100637002 10 - TSS region transcription start site region 136447
Tssr136448 15 100637068 to 100637082 14 - TSS region transcription start site region 136448
Tssr136449 15 100637084 to 100637107 23 - TSS region transcription start site region 136449
Tssr136450 15 100637109 to 100637155 46 - TSS region transcription start site region 136450
Tssr136451 15 100637270 to 100637281 11 - TSS region transcription start site region 136451
Bin2 15 100641077 to 100669553 28476 - protein coding gene bridging integrator 2
Tssr133151 15 100641210 to 100641245 35 + TSS region transcription start site region 133151
Tssr136452 15 100641459 to 100641482 23 - TSS region transcription start site region 136452
Tssr136453 15 100641511 to 100641521 10 - TSS region transcription start site region 136453
Tssr136454 15 100644912 to 100644938 26 - TSS region transcription start site region 136454
Tssr136455 15 100644940 to 100644957 17 - TSS region transcription start site region 136455
Tssr136456 15 100645024 to 100645035 11 - TSS region transcription start site region 136456
Mir6961 15 100649163 to 100649229 66 - miRNA gene microRNA 6961
Tssr133152 15 100665297 to 100665310 13 + TSS region transcription start site region 133152
Tssr136457 15 100667604 to 100667605 1 - TSS region transcription start site region 136457
Cpgi7746 15 100669165 to 100669641 476 CpG island CpG island 7746
Tssr136458 15 100669496 to 100669511 15 - TSS region transcription start site region 136458
Tssr136459 15 100669512 to 100669529 17 - TSS region transcription start site region 136459
Tssr136460 15 100669535 to 100669560 25 - TSS region transcription start site region 136460
Tssr133153 15 100674419 to 100674431 12 + TSS region transcription start site region 133153
Cela1 15 100674422 to 100687920 13498 - protein coding gene chymotrypsin-like elastase family, member 1
Tssr4720 15 100674466 to 100674467 1 - TSS region transcription start site region 4720
Tssr136461 15 100674471 to 100674496 25 - TSS region transcription start site region 136461
Tssr136462 15 100674570 to 100674588 18 - TSS region transcription start site region 136462
Tssr136463 15 100674602 to 100674618 16 - TSS region transcription start site region 136463
Tssr133154 15 100674605 to 100674633 28 + TSS region transcription start site region 133154
Tssr136464 15 100674657 to 100674659 2 - TSS region transcription start site region 136464
Tssr136465 15 100674673 to 100674682 9 - TSS region transcription start site region 136465
Tssr136466 15 100674706 to 100674717 11 - TSS region transcription start site region 136466
Tssr136467 15 100674718 to 100674720 2 - TSS region transcription start site region 136467
Tssr136468 15 100675354 to 100675362 8 - TSS region transcription start site region 136468
Tssr136469 15 100675375 to 100675402 27 - TSS region transcription start site region 136469
Tssr136470 15 100675403 to 100675414 11 - TSS region transcription start site region 136470
Tssr136471 15 100675416 to 100675436 20 - TSS region transcription start site region 136471
Tssr136472 15 100675438 to 100675447 9 - TSS region transcription start site region 136472
Tssr4721 15 100675528 to 100675574 46 - TSS region transcription start site region 4721
Tssr136473 15 100678084 to 100678093 9 - TSS region transcription start site region 136473
Tssr136474 15 100678114 to 100678122 8 - TSS region transcription start site region 136474
Tssr136475 15 100678173 to 100678178 5 - TSS region transcription start site region 136475
Tssr136476 15 100678835 to 100678850 15 - TSS region transcription start site region 136476
Tssr136477 15 100681177 to 100681264 87 - TSS region transcription start site region 136477
Tssr136478 15 100681569 to 100681585 16 - TSS region transcription start site region 136478
Tssr136479 15 100681884 to 100681919 35 - TSS region transcription start site region 136479
Tssr136480 15 100681920 to 100681931 11 - TSS region transcription start site region 136480
Tssr136481 15 100681940 to 100681951 11 - TSS region transcription start site region 136481
Tssr136482 15 100681952 to 100681957 5 - TSS region transcription start site region 136482
Tssr136483 15 100681958 to 100681974 16 - TSS region transcription start site region 136483
Tssr136484 15 100682028 to 100682041 13 - TSS region transcription start site region 136484
Tssr136485 15 100682060 to 100682071 11 - TSS region transcription start site region 136485
Tssr136486 15 100682832 to 100682848 16 - TSS region transcription start site region 136486
Tssr136487 15 100682920 to 100682943 23 - TSS region transcription start site region 136487
Tssr136488 15 100682948 to 100682979 31 - TSS region transcription start site region 136488
Tssr136489 15 100682980 to 100683000 20 - TSS region transcription start site region 136489
Tssr136490 15 100683009 to 100683031 22 - TSS region transcription start site region 136490
Tssr136491 15 100683302 to 100683306 4 - TSS region transcription start site region 136491
Tssr133155 15 100684578 to 100684604 26 + TSS region transcription start site region 133155
Tssr133156 15 100684609 to 100684622 13 + TSS region transcription start site region 133156
Tssr136492 15 100684611 to 100684711 100 - TSS region transcription start site region 136492
Tssr133157 15 100684625 to 100684637 12 + TSS region transcription start site region 133157
Tssr136493 15 100685162 to 100685243 81 - TSS region transcription start site region 136493
Cpgi7747 15 100685247 to 100685423 176 CpG island CpG island 7747
Cpgi7748 15 100687111 to 100687268 157 CpG island CpG island 7748
Tssr136494 15 100687118 to 100687126 8 - TSS region transcription start site region 136494
Tssr136495 15 100687150 to 100687212 62 - TSS region transcription start site region 136495
Tssr136496 15 100687214 to 100687241 27 - TSS region transcription start site region 136496
Tssr136497 15 100687908 to 100687924 16 - TSS region transcription start site region 136497
Galnt6 15 100691813 to 100729376 37563 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 6
Tssr133158 15 100695767 to 100695796 29 + TSS region transcription start site region 133158
Galnt6os 15 100695773 to 100704896 9123 + antisense lncRNA gene polypeptide N-acetylgalactosaminyltransferase 6, opposite strand
Tssr133159 15 100695800 to 100695824 24 + TSS region transcription start site region 133159
Cpgi7749 15 100704062 to 100704309 247 CpG island CpG island 7749