Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:8283620-12081051

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam107a 14 8296270 to 8318018 21748 - protein coding gene family with sequence similarity 107, member A
D14Mit146.2 14 8296926 to 8297088 162 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 146.2
D14Mit146 14 8297063 to 8297197 134 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 146
Tssr127412 14 8297110 to 8297136 26 - TSS region transcription start site region 127412
Tssr127413 14 8298095 to 8298105 10 - TSS region transcription start site region 127413
Tssr127414 14 8298366 to 8298375 9 - TSS region transcription start site region 127414
Tssr124243 14 8299572 to 8299582 10 + TSS region transcription start site region 124243
Tssr127415 14 8299629 to 8299665 36 - TSS region transcription start site region 127415
Tssr127416 14 8309678 to 8309725 47 - TSS region transcription start site region 127416
Tssr127417 14 8309734 to 8309745 11 - TSS region transcription start site region 127417
Tssr127418 14 8309770 to 8309784 14 - TSS region transcription start site region 127418
C530034L13Rik 14 8317163 to 8319868 2705 unclassified gene RIKEN cDNA C530034L13 gene
Cpgi6159 14 8317170 to 8317796 626 CpG island CpG island 6159
Tssr127419 14 8317596 to 8317604 8 - TSS region transcription start site region 127419
Tssr127420 14 8317613 to 8317627 14 - TSS region transcription start site region 127420
Tssr127421 14 8317818 to 8317829 11 - TSS region transcription start site region 127421
Tssr127422 14 8317858 to 8317881 23 - TSS region transcription start site region 127422
Tssr127423 14 8318033 to 8318054 21 - TSS region transcription start site region 127423
Tssr124244 14 8332446 to 8332453 7 + TSS region transcription start site region 124244
Oit1 14 8348937 to 8378754 29817 - protein coding gene oncoprotein induced transcript 1
Tssr127424 14 8360339 to 8360362 23 - TSS region transcription start site region 127424
Tssr127425 14 8367246 to 8367257 11 - TSS region transcription start site region 127425
Tssr127426 14 8367261 to 8367280 19 - TSS region transcription start site region 127426
Tssr127427 14 8367281 to 8367297 16 - TSS region transcription start site region 127427
Tssr124245 14 8367370 to 8367390 20 + TSS region transcription start site region 124245
Tssr124246 14 8367412 to 8367419 7 + TSS region transcription start site region 124246
2610318M16Rik 14 8367440 to 8371010 3570 + antisense lncRNA gene RIKEN cDNA 2610318M16 gene
Tssr127428 14 8368120 to 8368136 16 - TSS region transcription start site region 127428
Tssr127429 14 8368149 to 8368157 8 - TSS region transcription start site region 127429
Tssr124247 14 8368235 to 8368255 20 + TSS region transcription start site region 124247
Tssr124248 14 8368256 to 8368265 9 + TSS region transcription start site region 124248
Tssr124249 14 8368272 to 8368281 9 + TSS region transcription start site region 124249
Tssr127430 14 8378700 to 8378705 5 - TSS region transcription start site region 127430
Tssr127431 14 8378727 to 8378751 24 - TSS region transcription start site region 127431
Tssr127432 14 8378753 to 8378804 51 - TSS region transcription start site region 127432
Tssr127433 14 8378821 to 8378846 25 - TSS region transcription start site region 127433
Tssr127434 14 8378851 to 8378870 19 - TSS region transcription start site region 127434
Tssr127435 14 8378890 to 8378897 7 - TSS region transcription start site region 127435
Tssr127436 14 8378899 to 8378923 24 - TSS region transcription start site region 127436
Gm41095 14 8379105 to 8449034 69929 + lncRNA gene predicted gene, 41095
Gm8416 14 8408915 to 8410193 1278 + pseudogene predicted gene 8416
4930452B06Rik 14 8431192 to 8666240 235048 - protein coding gene RIKEN cDNA 4930452B06 gene
Gm46492 14 8464268 to 8466922 2654 + lncRNA gene predicted gene, 46492
D14Mit179 14 8513657 to 8513800 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 179
Tssr124250 14 8610332 to 8610366 34 + TSS region transcription start site region 124250
Tssr124251 14 8615909 to 8615913 4 + TSS region transcription start site region 124251
Cpgi6160 14 8665926 to 8666481 555 CpG island CpG island 6160
Tssr127437 14 8666203 to 8666235 32 - TSS region transcription start site region 127437
Tssr127438 14 8666236 to 8666279 43 - TSS region transcription start site region 127438
Tssr124252 14 8666349 to 8666360 11 + TSS region transcription start site region 124252
Tssr124253 14 8666369 to 8666413 44 + TSS region transcription start site region 124253
4930455B14Rik 14 8666390 to 8673378 6988 + lincRNA gene RIKEN cDNA 4930455B14 gene
Gm20241 14 8687419 to 8687909 490 + pseudogene predicted gene, 20241
Gm9800 14 8800000 to 8800335 335 - pseudogene predicted gene 9800
Tssr127439 14 8800517 to 8800519 2 - TSS region transcription start site region 127439
Gm48364 14 8858989 to 8860050 1061 - pseudogene predicted gene, 48364
Gm18071 14 8925472 to 8926180 708 - pseudogene predicted gene, 18071
Tssr124254 14 9156970 to 9156972 2 + TSS region transcription start site region 124254
Gm48370 14 9400624 to 9459180 58556 + lincRNA gene predicted gene, 48370
Gm48371 14 9443375 to 9469555 26180 - lincRNA gene predicted gene, 48371
Gm41097 14 9448523 to 9502368 53845 + lncRNA gene predicted gene, 41097
Gm41096 14 9502091 to 9529387 27296 - lncRNA gene predicted gene, 41096
Tssr127440 14 9529351 to 9529368 17 - TSS region transcription start site region 127440
Tssr127441 14 9560883 to 9560905 22 - TSS region transcription start site region 127441
Tssr127442 14 9634364 to 9634398 34 - TSS region transcription start site region 127442
Tssr4247 14 9658569 to 9658570 1 + TSS region transcription start site region 4247
Hmgb3-ps 14 9863078 to 9863654 576 + pseudogene Hmgb3 retrotransposed pseudogene
Mnd1-ps 14 9884195 to 9886768 2573 + pseudogene Mnd1 retrotransposed pseudogene
Tssr124255 14 9885959 to 9885996 37 + TSS region transcription start site region 124255
Gm48438 14 9901921 to 9904368 2447 - unclassified gene predicted gene, 48438
Tssr4248 14 9955748 to 9955752 4 - TSS region transcription start site region 4248
D14Mit229 14 9961277 to 9961394 117 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology 229
Gm48430 14 10017223 to 10018671 1448 - unclassified gene predicted gene, 48430
Tssr127443 14 10176658 to 10176660 2 - TSS region transcription start site region 127443
Gm48439 14 10178620 to 10186051 7431 + antisense lncRNA gene predicted gene, 48439
Tssr127444 14 10204618 to 10204652 34 - TSS region transcription start site region 127444
Tssr127445 14 10278005 to 10278010 5 - TSS region transcription start site region 127445
Tssr127446 14 10331851 to 10331859 8 - TSS region transcription start site region 127446
Gm48442 14 10377697 to 10379948 2251 - unclassified gene predicted gene, 48442
Tssr127447 14 10453408 to 10453430 22 - TSS region transcription start site region 127447
Tssr127448 14 10453443 to 10453467 24 - TSS region transcription start site region 127448
Gm22053 14 10478674 to 10478873 199 + snoRNA gene predicted gene, 22053
D14Mit132 14 10497633 to 10497764 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 132
Fhitos 14 10738553 to 10779001 40448 + antisense lncRNA gene fragile histidine triad gene, opposite strand
Gm48437 14 10779067 to 10780448 1381 - unclassified gene predicted gene, 48437
Tssr124256 14 11122754 to 11122756 2 + TSS region transcription start site region 124256
Cpgi6161 14 11161649 to 11162201 552 CpG island CpG island 6161
Tssr127449 14 11162008 to 11162041 33 - TSS region transcription start site region 127449
Fhit 14 11162035 to 9550092 -1611943 - protein coding gene fragile histidine triad gene
Slc25a5-ps 14 11179630 to 11180888 1258 + pseudogene Slc25a5 retrotransposed pseudogene
D14Mit245 14 11217344 to 11217450 106 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-245
Tssr124257 14 11227511 to 11227514 3 + TSS region transcription start site region 124257
Rpl21-ps4 14 11227552 to 11227989 437 + pseudogene ribosomal protein L21, pseudogene 4
Cpgi6162 14 11236020 to 11236220 200 CpG island CpG island 6162
Gm3839 14 11280751 to 11281951 1200 - protein coding gene predicted pseudogene 3839
Mir5124b 14 11282477 to 11282561 84 + miRNA gene microRNA 5124b
Tssr4249 14 11317527 to 11317534 7 + TSS region transcription start site region 4249
Tssr127450 14 11335043 to 11335051 8 - TSS region transcription start site region 127450
Gm25466 14 11335873 to 11336004 131 + snoRNA gene predicted gene, 25466
D14Mit1 14 11369444 to 11369550 106 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1
Gm48592 14 11392560 to 11392925 365 + pseudogene predicted gene, 48592
Gm48594 14 11460359 to 11502992 42633 + lincRNA gene predicted gene, 48594
Gm8438 14 11491076 to 11491657 581 - pseudogene predicted gene 8438
Gm48595 14 11510535 to 11520770 10235 - lincRNA gene predicted gene, 48595
Cpgi6163 14 11552671 to 11555315 2644 CpG island CpG island 6163
Tssr124258 14 11553461 to 11553484 23 + TSS region transcription start site region 124258
Tssr124259 14 11553499 to 11553514 15 + TSS region transcription start site region 124259
Tssr124260 14 11553523 to 11553542 19 + TSS region transcription start site region 124260
Ptprg 14 11553553 to 12242040 688487 + protein coding gene protein tyrosine phosphatase, receptor type, G
Bomd2 14 11553553 to 12242040 688487 QTL bone mineral density 2
Tssr124261 14 11553555 to 11553564 9 + TSS region transcription start site region 124261
Tssr124262 14 11553568 to 11553597 29 + TSS region transcription start site region 124262
Tssr124263 14 11553598 to 11553615 17 + TSS region transcription start site region 124263
Tssr124264 14 11553702 to 11553773 71 + TSS region transcription start site region 124264
Cpgi6164 14 11555654 to 11555906 252 CpG island CpG island 6164
Cpgi6165 14 11556281 to 11556747 466 CpG island CpG island 6165
Tssr124265 14 11570018 to 11570031 13 + TSS region transcription start site region 124265
Tssr124266 14 11570039 to 11570051 12 + TSS region transcription start site region 124266
Tssr124267 14 11570100 to 11570115 15 + TSS region transcription start site region 124267
Tssr124268 14 11604056 to 11604060 4 + TSS region transcription start site region 124268
Tssr124269 14 11617662 to 11617691 29 + TSS region transcription start site region 124269
Tssr124270 14 11618625 to 11618629 4 + TSS region transcription start site region 124270
Tssr124271 14 11640120 to 11640121 1 + TSS region transcription start site region 124271
Tssr124272 14 11697053 to 11697057 4 + TSS region transcription start site region 124272
Gm48602 14 11767943 to 11771311 3368 + unclassified gene predicted gene, 48602
Tssr124273 14 11814525 to 11814528 3 + TSS region transcription start site region 124273
Tssr124274 14 11824362 to 11824367 5 + TSS region transcription start site region 124274
Gm48601 14 11867594 to 11870625 3031 + unclassified gene predicted gene, 48601
Gm48600 14 11904679 to 11909158 4479 + unclassified gene predicted gene, 48600
Gm3848 14 11965446 to 11981223 15777 - antisense lncRNA gene predicted gene 3848
Tssr127451 14 11981225 to 11981232 7 - TSS region transcription start site region 127451
Tssr124275 14 11986236 to 11986240 4 + TSS region transcription start site region 124275
Tssr124276 14 12046045 to 12046049 4 + TSS region transcription start site region 124276