Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:63862271-65442958

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pinx1 14 63860364 to 63919859 59495 + protein coding gene PIN2/TERF1 interacting, telomerase inhibitor 1
Tssr126143 14 63899742 to 63899791 49 + TSS region transcription start site region 126143
Cpgi6618 14 63942678 to 63944329 1651 CpG island CpG island 6618
Tssr126144 14 63943666 to 63943687 21 + TSS region transcription start site region 126144
Sox7 14 63943706 to 63950732 7026 + protein coding gene SRY (sex determining region Y)-box 7
Tssr126145 14 63943932 to 63943952 20 + TSS region transcription start site region 126145
Cpgi6619 14 63947910 to 63948160 250 CpG island CpG island 6619
4930578I06Rik 14 63971121 to 63987780 16659 - protein coding gene RIKEN cDNA 4930578I06 gene
Gm36410 14 63981937 to 63985935 3998 + lncRNA gene predicted gene, 36410
D14Mit31 14 63984558 to 63984671 113 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 31
Gm10867 14 63987612 to 63992036 4424 unclassified gene predicted gene 10867
Tssr129204 14 63987739 to 63987767 28 - TSS region transcription start site region 129204
Tssr129205 14 63987774 to 63987793 19 - TSS region transcription start site region 129205
Tssr126146 14 63992425 to 63992443 18 + TSS region transcription start site region 126146
Rp1l1 14 63992431 to 64033506 41075 + protein coding gene retinitis pigmentosa 1 homolog like 1
Tssr126147 14 63992444 to 63992455 11 + TSS region transcription start site region 126147
Tssr126148 14 63992467 to 63992479 12 + TSS region transcription start site region 126148
D14Mit235 14 64052218 to 64052338 120 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology 235
Tssr126149 14 64072031 to 64072038 7 + TSS region transcription start site region 126149
Prss55 14 64075435 to 64085433 9998 - protein coding gene protease, serine 55
Tssr129206 14 64085400 to 64085415 15 - TSS region transcription start site region 129206
Tssr126150 14 64085507 to 64085521 14 + TSS region transcription start site region 126150
Prss51 14 64086234 to 64097678 11444 + protein coding gene protease, serine 51
Tssr126151 14 64093682 to 64093712 30 + TSS region transcription start site region 126151
Tssr126152 14 64093713 to 64093737 24 + TSS region transcription start site region 126152
4930471C04Rik 14 64099295 to 64104235 4940 - lincRNA gene RIKEN cDNA 4930471C04 gene
Tssr129207 14 64104229 to 64104238 9 - TSS region transcription start site region 129207
Tssr126153 14 64104316 to 64104328 12 + TSS region transcription start site region 126153
Prss52 14 64104323 to 64113751 9428 + protein coding gene protease, serine 52
Tssr4451 14 64104338 to 64104340 2 + TSS region transcription start site region 4451
Gm17116 14 64111200 to 64114641 3441 - antisense lncRNA gene predicted gene 17116
9630015K15Rik 14 64116314 to 64127605 11291 + antisense lncRNA gene RIKEN cDNA 9630015K15 gene
Msra 14 64122625 to 64455903 333278 - protein coding gene methionine sulfoxide reductase A
5230401M06Rik 14 64138546 to 64139825 1279 unclassified gene RIKEN cDNA 5230401M06 gene
Tssr129208 14 64146883 to 64146885 2 - TSS region transcription start site region 129208
Tssr129209 14 64174610 to 64174633 23 - TSS region transcription start site region 129209
Tssr129210 14 64174676 to 64174690 14 - TSS region transcription start site region 129210
Tssr4452 14 64176436 to 64176440 4 + TSS region transcription start site region 4452
1700044K19Rik 14 64185461 to 64185974 513 unclassified gene RIKEN cDNA 1700044K19 gene
Gm41176 14 64272290 to 64280235 7945 + lncRNA gene predicted gene, 41176
Tssr126154 14 64323980 to 64323985 5 + TSS region transcription start site region 126154
Tssr129211 14 64327577 to 64327597 20 - TSS region transcription start site region 129211
Tssr129212 14 64403662 to 64403665 3 - TSS region transcription start site region 129212
Tssr129213 14 64413498 to 64413501 3 - TSS region transcription start site region 129213
Tssr129214 14 64417041 to 64417047 6 - TSS region transcription start site region 129214
Tssr129215 14 64417135 to 64417162 27 - TSS region transcription start site region 129215
Tssr129216 14 64417781 to 64417790 9 - TSS region transcription start site region 129216
Tssr129217 14 64417801 to 64417833 32 - TSS region transcription start site region 129217
Tssr129218 14 64419522 to 64419536 14 - TSS region transcription start site region 129218
Tssr129219 14 64434182 to 64434226 44 - TSS region transcription start site region 129219
Tssr126155 14 64434371 to 64434391 20 + TSS region transcription start site region 126155
Tssr129220 14 64439807 to 64439811 4 - TSS region transcription start site region 129220
Tssr126156 14 64440157 to 64440179 22 + TSS region transcription start site region 126156
Cpgi6620 14 64440313 to 64441135 822 CpG island CpG island 6620
Tssr4453 14 64440467 to 64440485 18 - TSS region transcription start site region 4453
Tssr129221 14 64440487 to 64440509 22 - TSS region transcription start site region 129221
Tssr126157 14 64440666 to 64440720 54 + TSS region transcription start site region 126157
Tssr126158 14 64440726 to 64440747 21 + TSS region transcription start site region 126158
Tssr129222 14 64440797 to 64440802 5 - TSS region transcription start site region 129222
Tssr129223 14 64440813 to 64440820 7 - TSS region transcription start site region 129223
Tssr4454 14 64440843 to 64440846 3 - TSS region transcription start site region 4454
Tssr129224 14 64440848 to 64440863 15 - TSS region transcription start site region 129224
Tssr129225 14 64440868 to 64440923 55 - TSS region transcription start site region 129225
Tssr129226 14 64440934 to 64440955 21 - TSS region transcription start site region 129226
Tssr129227 14 64440964 to 64440981 17 - TSS region transcription start site region 129227
Tssr4455 14 64441020 to 64441029 9 - TSS region transcription start site region 4455
Tssr129228 14 64441034 to 64441045 11 - TSS region transcription start site region 129228
Tssr126159 14 64441094 to 64441096 2 + TSS region transcription start site region 126159
Tssr129229 14 64441856 to 64441861 5 - TSS region transcription start site region 129229
Gm47202 14 64530952 to 64537538 6586 - lincRNA gene predicted gene, 47202
Tssr126160 14 64574364 to 64574426 62 + TSS region transcription start site region 126160
Tssr129230 14 64576114 to 64576138 24 - TSS region transcription start site region 129230
Tssr126161 14 64580759 to 64580770 11 + TSS region transcription start site region 126161
Tssr126162 14 64583715 to 64583742 27 + TSS region transcription start site region 126162
Cpgi6621 14 64586821 to 64587957 1136 CpG island CpG island 6621
Tssr126163 14 64587173 to 64587191 18 + TSS region transcription start site region 126163
Tssr126164 14 64587289 to 64587305 16 + TSS region transcription start site region 126164
Tssr126165 14 64587323 to 64587336 13 + TSS region transcription start site region 126165
Tssr126166 14 64587360 to 64587372 12 + TSS region transcription start site region 126166
Tssr126167 14 64587384 to 64587434 50 + TSS region transcription start site region 126167
Tssr126168 14 64587478 to 64587489 11 + TSS region transcription start site region 126168
Tssr126169 14 64588014 to 64588058 44 + TSS region transcription start site region 126169
Tssr126170 14 64588098 to 64588108 10 + TSS region transcription start site region 126170
Tssr126171 14 64588112 to 64588120 8 + TSS region transcription start site region 126171
Mir124a-1hg 14 64588115 to 64593961 5846 + lincRNA gene Mir124-1 host gene (non-protein coding)
Tssr126172 14 64588122 to 64588136 14 + TSS region transcription start site region 126172
Tssr126173 14 64588278 to 64588289 11 + TSS region transcription start site region 126173
Tssr126174 14 64588336 to 64588361 25 + TSS region transcription start site region 126174
Tssr126175 14 64588545 to 64588559 14 + TSS region transcription start site region 126175
Tssr126176 14 64589689 to 64589753 64 + TSS region transcription start site region 126176
Tssr126177 14 64589802 to 64589848 46 + TSS region transcription start site region 126177
Cpgi6622 14 64589821 to 64590932 1111 CpG island CpG island 6622
Tssr126178 14 64589861 to 64589898 37 + TSS region transcription start site region 126178
Tssr126179 14 64589900 to 64589910 10 + TSS region transcription start site region 126179
Tssr126180 14 64590294 to 64590307 13 + TSS region transcription start site region 126180
Tssr126181 14 64590378 to 64590389 11 + TSS region transcription start site region 126181
Tssr126182 14 64590404 to 64590426 22 + TSS region transcription start site region 126182
Tssr126183 14 64590438 to 64590452 14 + TSS region transcription start site region 126183
Tssr126184 14 64590461 to 64590473 12 + TSS region transcription start site region 126184
Tssr126185 14 64590481 to 64590488 7 + TSS region transcription start site region 126185
Mir124a-1 14 64590657 to 64590741 84 + miRNA gene microRNA 124a-1
Tssr126186 14 64590729 to 64590732 3 + TSS region transcription start site region 126186
Mir3078 14 64591185 to 64591271 86 + miRNA gene microRNA 3078
Gm36924 14 64624577 to 64638185 13608 + lncRNA gene predicted gene, 36924
Cpgi6623 14 64652271 to 64652958 687 CpG island CpG island 6623
Tssr126187 14 64652485 to 64652494 9 + TSS region transcription start site region 126187
Kif13b 14 64652490 to 64809618 157128 + protein coding gene kinesin family member 13B
Tssr126188 14 64652503 to 64652521 18 + TSS region transcription start site region 126188
Tssr126189 14 64652524 to 64652555 31 + TSS region transcription start site region 126189
Tssr126190 14 64652559 to 64652582 23 + TSS region transcription start site region 126190
Tssr126191 14 64675417 to 64675453 36 + TSS region transcription start site region 126191
Gm19019 14 64677223 to 64677811 588 + pseudogene predicted gene, 19019
Tssr126192 14 64690687 to 64690691 4 + TSS region transcription start site region 126192
Tbconq1 14 64700000 to 77100000 12400000 QTL trabecular bone connectivity QTL 1
Tssr126193 14 64720319 to 64720323 4 + TSS region transcription start site region 126193
Gm26225 14 64753918 to 64754052 134 + snoRNA gene predicted gene, 26225
Hmbox1 14 64811600 to 64949871 138271 - protein coding gene homeobox containing 1
Tssr129231 14 64813055 to 64813073 18 - TSS region transcription start site region 129231
Gm37183 14 64835855 to 64839259 3404 - unclassified gene predicted gene, 37183
Gm20111 14 64839100 to 64839418 318 + pseudogene predicted gene, 20111
Gm4573 14 64921821 to 64922085 264 + pseudogene predicted gene 4573
Tssr129232 14 64942280 to 64942285 5 - TSS region transcription start site region 129232
Tssr129233 14 64948900 to 64948917 17 - TSS region transcription start site region 129233
Tssr129234 14 64949330 to 64949370 40 - TSS region transcription start site region 129234
Tssr129235 14 64949632 to 64949674 42 - TSS region transcription start site region 129235
Cpgi6624 14 64949673 to 64950192 519 CpG island CpG island 6624
Tssr129236 14 64949730 to 64949751 21 - TSS region transcription start site region 129236
Tssr129237 14 64949814 to 64949820 6 - TSS region transcription start site region 129237
Tssr129238 14 64949838 to 64949886 48 - TSS region transcription start site region 129238
Tssr126194 14 64950037 to 64950056 19 + TSS region transcription start site region 126194
Ints9 14 64950045 to 65039832 89787 + protein coding gene integrator complex subunit 9
Tssr126195 14 64950104 to 64950115 11 + TSS region transcription start site region 126195
Tssr126196 14 64950264 to 64950307 43 + TSS region transcription start site region 126196
Tssr126197 14 64950314 to 64950323 9 + TSS region transcription start site region 126197
Tssr126198 14 64953141 to 64953143 2 + TSS region transcription start site region 126198
Extl3 14 65052060 to 65149855 97795 - protein coding gene exostoses (multiple)-like 3
Cpgi6625 14 65071387 to 65071540 153 CpG island CpG island 6625
Tssr126199 14 65076465 to 65076468 3 + TSS region transcription start site region 126199
Cpgi6626 14 65097396 to 65098440 1044 CpG island CpG island 6626
Tssr129239 14 65098031 to 65098100 69 - TSS region transcription start site region 129239
Tssr126200 14 65100697 to 65100709 12 + TSS region transcription start site region 126200
Cpgi6627 14 65149510 to 65150242 732 CpG island CpG island 6627
Tssr129240 14 65149833 to 65149847 14 - TSS region transcription start site region 129240
Tssr129241 14 65149854 to 65149897 43 - TSS region transcription start site region 129241
Gm48299 14 65166914 to 65167191 277 + pseudogene predicted gene, 48299
Gm30008 14 65171279 to 65174949 3670 - lincRNA gene predicted gene, 30008
Tssr126201 14 65172309 to 65172330 21 + TSS region transcription start site region 126201
Tssr126202 14 65172332 to 65172361 29 + TSS region transcription start site region 126202
Gm41177 14 65172355 to 65185337 12982 + lincRNA gene predicted gene, 41177
Tssr126203 14 65174044 to 65174055 11 + TSS region transcription start site region 126203
Tssr126204 14 65174061 to 65174071 10 + TSS region transcription start site region 126204
Tssr129242 14 65174924 to 65174934 10 - TSS region transcription start site region 129242
Tssr129243 14 65174946 to 65174963 17 - TSS region transcription start site region 129243
Fzd3 14 65192449 to 65262463 70014 - protein coding gene frizzled class receptor 3
Tssr129244 14 65194975 to 65194993 18 - TSS region transcription start site region 129244
Tssr129245 14 65199995 to 65199999 4 - TSS region transcription start site region 129245
Gm27263 14 65206894 to 65206969 75 - unclassified non-coding RNA gene predicted gene, 27263
Gm9086 14 65207119 to 65207731 612 + pseudogene predicted gene 9086
D130009B15Rik 14 65216709 to 65219642 2933 unclassified gene RIKEN cDNA D130009B15 gene
Tssr126205 14 65227700 to 65227705 5 + TSS region transcription start site region 126205
Tssr129246 14 65255879 to 65255883 4 - TSS region transcription start site region 129246
Cpgi6628 14 65261605 to 65262973 1368 CpG island CpG island 6628
Tssr4456 14 65262366 to 65262373 7 - TSS region transcription start site region 4456
Tssr129247 14 65262391 to 65262490 99 - TSS region transcription start site region 129247
Fbxo16 14 65266618 to 65323973 57355 + protein coding gene F-box protein 16
Tssr126206 14 65266680 to 65266692 12 + TSS region transcription start site region 126206
Tssr126207 14 65266704 to 65266752 48 + TSS region transcription start site region 126207
Gm41178 14 65296452 to 65299193 2741 - lncRNA gene predicted gene, 41178
Tssr129248 14 65299348 to 65299386 38 - TSS region transcription start site region 129248
Gm48433 14 65326331 to 65337604 11273 + lincRNA gene predicted gene, 48433
Cpgi6629 14 65331796 to 65332494 698 CpG island CpG island 6629
Cpgi6630 14 65343252 to 65344242 990 CpG island CpG island 6630
Gm48449 14 65351442 to 65359410 7968 - antisense lncRNA gene predicted gene, 48449
Cpgi6631 14 65357957 to 65359382 1425 CpG island CpG island 6631
Tssr126208 14 65358087 to 65358109 22 + TSS region transcription start site region 126208
Tssr126209 14 65358487 to 65358535 48 + TSS region transcription start site region 126209
Tssr126210 14 65358578 to 65358589 11 + TSS region transcription start site region 126210
Tssr126211 14 65358590 to 65358615 25 + TSS region transcription start site region 126211
Tssr126212 14 65358622 to 65358652 30 + TSS region transcription start site region 126212
Tssr126213 14 65358661 to 65358691 30 + TSS region transcription start site region 126213
Zfp395 14 65358676 to 65398930 40254 + protein coding gene zinc finger protein 395
Tssr126214 14 65368843 to 65368849 6 + TSS region transcription start site region 126214
Tssr126215 14 65375339 to 65375386 47 + TSS region transcription start site region 126215
Tssr126216 14 65380718 to 65380736 18 + TSS region transcription start site region 126216
Tssr126217 14 65394774 to 65394793 19 + TSS region transcription start site region 126217
Tssr126218 14 65396634 to 65396650 16 + TSS region transcription start site region 126218
Pnoc 14 65400673 to 65425472 24799 - protein coding gene prepronociceptin
Tssr129249 14 65405186 to 65405192 6 - TSS region transcription start site region 129249
Tssr129250 14 65425169 to 65425188 19 - TSS region transcription start site region 129250
Tssr129251 14 65425453 to 65425466 13 - TSS region transcription start site region 129251