Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:61413371-61873455

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kpna3 14 61365211 to 61439874 74663 - protein coding gene karyopherin (importin) alpha 3
Tssr129074 14 61419701 to 61419707 6 - TSS region transcription start site region 129074
Tssr129075 14 61420837 to 61420840 3 - TSS region transcription start site region 129075
Tssr129076 14 61436799 to 61436810 11 - TSS region transcription start site region 129076
Tssr129077 14 61437048 to 61437054 6 - TSS region transcription start site region 129077
Tssr129078 14 61438331 to 61438334 3 - TSS region transcription start site region 129078
Cpgi6581 14 61439127 to 61440474 1347 CpG island CpG island 6581
Tssr129079 14 61439809 to 61439828 19 - TSS region transcription start site region 129079
Tssr129080 14 61439831 to 61439869 38 - TSS region transcription start site region 129080
Tssr129081 14 61440025 to 61440041 16 - TSS region transcription start site region 129081
Tssr129082 14 61440063 to 61440102 39 - TSS region transcription start site region 129082
2900024I21Rik 14 61448487 to 61450136 1649 unclassified gene RIKEN cDNA 2900024I21 gene
Gm49298 14 61459267 to 61459721 454 + pseudogene predicted gene, 49298
Rps12-ps2 14 61466968 to 61467366 398 - pseudogene ribosomal protein S12, pseudogene 2
Gm41169 14 61472841 to 61490398 17557 + lncRNA gene predicted gene, 41169
4930556J02Rik 14 61492688 to 61500382 7694 + lincRNA gene RIKEN cDNA 4930556J02 gene
Tssr125979 14 61492691 to 61492700 9 + TSS region transcription start site region 125979
Tssr125980 14 61492713 to 61492721 8 + TSS region transcription start site region 125980
Tssr125981 14 61492731 to 61492741 10 + TSS region transcription start site region 125981
Tssr125982 14 61519349 to 61519383 34 + TSS region transcription start site region 125982
Spryd7 14 61531993 to 61556886 24893 - protein coding gene SPRY domain containing 7
Vmn1r-ps136 14 61543727 to 61544108 381 + pseudogene vomeronasal 1 receptor, pseudogene 136
Cpgi6582 14 61556210 to 61557741 1531 CpG island CpG island 6582
Tssr129083 14 61556632 to 61556641 9 - TSS region transcription start site region 129083
Tssr129084 14 61556665 to 61556674 9 - TSS region transcription start site region 129084
Tssr129085 14 61556723 to 61556741 18 - TSS region transcription start site region 129085
Tssr129086 14 61556746 to 61556781 35 - TSS region transcription start site region 129086
Tssr129087 14 61556783 to 61556797 14 - TSS region transcription start site region 129087
Tssr129088 14 61556881 to 61556890 9 - TSS region transcription start site region 129088
Gm4118 14 61558798 to 61559442 644 + pseudogene predicted gene 4118
Tssr125983 14 61598226 to 61598241 15 + TSS region transcription start site region 125983
Tssr125984 14 61598242 to 61598252 10 + TSS region transcription start site region 125984
Trim13 14 61598247 to 61605946 7699 + protein coding gene tripartite motif-containing 13
Del(14Trim13-Dleu2)3Rdf 14 61598247 to 61682373 84126 chromosomal deletion deletion, Chr 14, Riccardo Dalla-Favera 3
Del(14Trim13-Dleu2)4Rdf 14 61598247 to 61682373 84126 chromosomal deletion deletion, Chr 14, Riccardo Dalla-Favera 4
Del(14Trim13-Rnaseh2b)6Rdf 14 61598247 to 62372992 774745 chromosomal deletion deletion, Chr 14, Riccardo Dalla-Favera 6
Tssr125985 14 61598264 to 61598286 22 + TSS region transcription start site region 125985
Tssr125986 14 61598300 to 61598310 10 + TSS region transcription start site region 125986
Cpgi6583 14 61599234 to 61599791 557 CpG island CpG island 6583
Tssr125987 14 61599493 to 61599548 55 + TSS region transcription start site region 125987
Tssr125988 14 61599550 to 61599569 19 + TSS region transcription start site region 125988
Tssr125989 14 61599570 to 61599584 14 + TSS region transcription start site region 125989
Dleu2 14 61602839 to 61682373 79534 - lncRNA gene deleted in lymphocytic leukemia, 2
Tssr125990 14 61607415 to 61607426 11 + TSS region transcription start site region 125990
Tssr125991 14 61607455 to 61607458 3 + TSS region transcription start site region 125991
Kcnrg 14 61607457 to 61612826 5369 + protein coding gene potassium channel regulator
Tssr129089 14 61609867 to 61609870 3 - TSS region transcription start site region 129089
Tssr129090 14 61614873 to 61614877 4 - TSS region transcription start site region 129090
Gm27010 14 61625926 to 61627337 1411 - lincRNA gene predicted gene, 27010
Tssr129091 14 61626922 to 61626923 1 - TSS region transcription start site region 129091
Gm27845 14 61629093 to 61629206 113 + unclassified non-coding RNA gene predicted gene, 27845
Gm26916 14 61629484 to 61630414 930 + lincRNA gene predicted gene, 26916
Mir16-1 14 61631880 to 61631972 92 - miRNA gene microRNA 16-1
Mirc30 14 61631880 to 61632110 230 complex/cluster/region microRNA cluster 30, including Mir16-1 through Mir15a
Tssr129092 14 61631888 to 61631893 5 - TSS region transcription start site region 129092
Mir15a 14 61632027 to 61632110 83 - miRNA gene microRNA 15a
Tssr129093 14 61633134 to 61633138 4 - TSS region transcription start site region 129093
Tssr129094 14 61636072 to 61636120 48 - TSS region transcription start site region 129094
Gm27747 14 61643371 to 61643455 84 + unclassified non-coding RNA gene predicted gene, 27747
Cpgi6584 14 61647509 to 61649446 1937 CpG island CpG island 6584
Tssr125992 14 61648360 to 61648365 5 + TSS region transcription start site region 125992
Tssr125993 14 61648414 to 61648430 16 + TSS region transcription start site region 125993
Tssr125994 14 61648435 to 61648445 10 + TSS region transcription start site region 125994
Tssr125995 14 61648456 to 61648465 9 + TSS region transcription start site region 125995
Gm27972 14 61648638 to 61648774 136 + unclassified non-coding RNA gene predicted gene, 27972
Tssr129095 14 61648762 to 61648807 45 - TSS region transcription start site region 129095
Tssr129096 14 61648811 to 61648814 3 - TSS region transcription start site region 129096
Gm27017 14 61648950 to 61667312 18362 + lincRNA gene predicted gene, 27017
Tssr129097 14 61656812 to 61656816 4 - TSS region transcription start site region 129097
Gm27928 14 61666387 to 61666642 255 + unclassified non-coding RNA gene predicted gene, 27928
Gm37420 14 61667220 to 61670131 2911 - unclassified gene predicted gene, 37420
Gm37472 14 61677443 to 61681494 4051 - unclassified gene predicted gene, 37472
Cpgi6585 14 61680839 to 61683314 2475 CpG island CpG island 6585
Tssr125996 14 61680963 to 61680995 32 + TSS region transcription start site region 125996
Tssr125997 14 61681543 to 61681569 26 + TSS region transcription start site region 125997
Tssr125998 14 61681977 to 61681986 9 + TSS region transcription start site region 125998
Tssr129098 14 61682310 to 61682335 25 - TSS region transcription start site region 129098
Tssr125999 14 61682575 to 61682610 35 + TSS region transcription start site region 125999
Gm37820 14 61683510 to 61685656 2146 + unclassified gene predicted gene, 37820
Tssr129099 14 61683847 to 61683891 44 - TSS region transcription start site region 129099
Cpgi6586 14 61686102 to 61687378 1276 CpG island CpG island 6586
Gm35196 14 61686786 to 61690598 3812 - lncRNA gene predicted gene, 35196
Cpgi6587 14 61689343 to 61690064 721 CpG island CpG island 6587
Tssr129100 14 61690888 to 61690894 6 - TSS region transcription start site region 129100
Gm46480 14 61707016 to 61708794 1778 + lncRNA gene predicted gene, 46480
Tssr4445 14 61768102 to 61768106 4 + TSS region transcription start site region 4445
Tssr4446 14 61805170 to 61805171 1 + TSS region transcription start site region 4446
Gm35247 14 61817815 to 61822477 4662 + lncRNA gene predicted gene, 35247
Gm41171 14 61845334 to 61846707 1373 - lncRNA gene predicted gene, 41171
Tssr126000 14 61861676 to 61861684 8 + TSS region transcription start site region 126000