Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:60591495-61521765

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recrq10 14 28200000 to 60900000 32700000 QTL recombination rate in male meiosis QTL 10
Gm29266 14 60485208 to 60599031 113823 + lincRNA gene predicted gene 29266
Gm47810 14 60596161 to 60596902 741 - pseudogene predicted gene, 47810
Gm41166 14 60615932 to 60623794 7862 - lncRNA gene predicted gene, 41166
Spata13 14 60634001 to 60764556 130555 + protein coding gene spermatogenesis associated 13
Cpgi6570 14 60634074 to 60635396 1322 CpG island CpG island 6570
Tssr125945 14 60634719 to 60634776 57 + TSS region transcription start site region 125945
Tssr125946 14 60634779 to 60634790 11 + TSS region transcription start site region 125946
Tssr125947 14 60635878 to 60635882 4 + TSS region transcription start site region 125947
Gm41165 14 60678629 to 60684864 6235 - lncRNA gene predicted gene, 41165
Tssr125948 14 60702914 to 60702931 17 + TSS region transcription start site region 125948
Tssr125949 14 60702946 to 60702971 25 + TSS region transcription start site region 125949
Tssr125950 14 60709311 to 60709336 25 + TSS region transcription start site region 125950
Tssr125951 14 60709345 to 60709358 13 + TSS region transcription start site region 125951
Tssr125952 14 60709395 to 60709483 88 + TSS region transcription start site region 125952
Tssr125953 14 60709491 to 60709519 28 + TSS region transcription start site region 125953
Tssr125954 14 60709520 to 60709533 13 + TSS region transcription start site region 125954
Tssr125955 14 60732994 to 60733009 15 + TSS region transcription start site region 125955
Tssr125956 14 60733026 to 60733042 16 + TSS region transcription start site region 125956
Tssr125957 14 60750159 to 60750171 12 + TSS region transcription start site region 125957
Tssr125958 14 60750207 to 60750222 15 + TSS region transcription start site region 125958
Cpgi6571 14 60756385 to 60756563 178 CpG island CpG island 6571
Tssr125959 14 60762564 to 60762576 12 + TSS region transcription start site region 125959
Tssr125960 14 60763784 to 60763788 4 + TSS region transcription start site region 125960
Gm34997 14 60764647 to 60767995 3348 - lncRNA gene predicted gene, 34997
Tssr125961 14 60768081 to 60768094 13 + TSS region transcription start site region 125961
Tssr125962 14 60768098 to 60768118 20 + TSS region transcription start site region 125962
Tssr125963 14 60768120 to 60768137 17 + TSS region transcription start site region 125963
C1qtnf9 14 60768134 to 60780869 12735 + protein coding gene C1q and tumor necrosis factor related protein 9
Mipepos 14 60776329 to 60784581 8252 - antisense lncRNA gene mitochondrial intermediate peptidase, opposite strand
Cpgi6572 14 60784251 to 60785234 983 CpG island CpG island 6572
Tssr125964 14 60784558 to 60784675 117 + TSS region transcription start site region 125964
Mipep 14 60784573 to 60905478 120905 + protein coding gene mitochondrial intermediate peptidase
Tssr129043 14 60784574 to 60784586 12 - TSS region transcription start site region 129043
Tssr125965 14 60784680 to 60784694 14 + TSS region transcription start site region 125965
Tnfrsf19 14 60963875 to 61046490 82615 - protein coding gene tumor necrosis factor receptor superfamily, member 19
Tssr129044 14 61023899 to 61023902 3 - TSS region transcription start site region 129044
Cpgi6573 14 61037595 to 61038035 440 CpG island CpG island 6573
Tssr129045 14 61037937 to 61037998 61 - TSS region transcription start site region 129045
Tssr125966 14 61038039 to 61038050 11 + TSS region transcription start site region 125966
Gm41167 14 61038041 to 61050622 12581 + lncRNA gene predicted gene, 41167
Cpgi6574 14 61045978 to 61046852 874 CpG island CpG island 6574
Tssr129046 14 61046154 to 61046174 20 - TSS region transcription start site region 129046
Tssr129047 14 61046230 to 61046241 11 - TSS region transcription start site region 129047
Tssr129048 14 61046295 to 61046306 11 - TSS region transcription start site region 129048
Tssr129049 14 61046462 to 61046487 25 - TSS region transcription start site region 129049
Tssr129050 14 61046494 to 61046523 29 - TSS region transcription start site region 129050
Tssr4443 14 61046542 to 61046553 11 - TSS region transcription start site region 4443
Tssr125967 14 61046647 to 61046657 10 + TSS region transcription start site region 125967
Tssr129051 14 61046863 to 61046874 11 - TSS region transcription start site region 129051
Gm41168 14 61056209 to 61079508 23299 + lincRNA gene predicted gene, 41168
Cpgi6575 14 61056495 to 61056765 270 CpG island CpG island 6575
Tssr125968 14 61129378 to 61129388 10 + TSS region transcription start site region 125968
Cpgi6576 14 61138425 to 61138825 400 CpG island CpG island 6576
Tssr125969 14 61138445 to 61138495 50 + TSS region transcription start site region 125969
Sacs 14 61138457 to 61240695 102238 + protein coding gene sacsin
Tssr4444 14 61147503 to 61147532 29 + TSS region transcription start site region 4444
C030009H01Rik 14 61170756 to 61173527 2771 unclassified gene RIKEN cDNA C030009H01 gene
Cpgi6577 14 61172525 to 61173606 1081 CpG island CpG island 6577
Tssr125970 14 61172966 to 61173018 52 + TSS region transcription start site region 125970
Tssr125971 14 61173023 to 61173081 58 + TSS region transcription start site region 125971
Tssr125972 14 61173086 to 61173100 14 + TSS region transcription start site region 125972
Tssr129052 14 61173492 to 61173497 5 - TSS region transcription start site region 129052
Tssr125973 14 61174881 to 61174904 23 + TSS region transcription start site region 125973
Sgcg 14 61219115 to 61258490 39375 - protein coding gene sarcoglycan, gamma (dystrophin-associated glycoprotein)
Tssr129053 14 61257990 to 61258014 24 - TSS region transcription start site region 129053
Tssr129054 14 61258383 to 61258465 82 - TSS region transcription start site region 129054
Tssr129055 14 61258484 to 61258493 9 - TSS region transcription start site region 129055
Gm17778 14 61272004 to 61276093 4089 + protein coding gene predicted gene, 17778
Cpgi6578 14 61274687 to 61275368 681 CpG island CpG island 6578
Gm19097 14 61283780 to 61284788 1008 - pseudogene predicted gene, 19097
Cpgi6579 14 61288676 to 61289210 534 CpG island CpG island 6579
1700109G14Rik 14 61292983 to 61305334 12351 - antisense lncRNA gene RIKEN cDNA 1700109G14 gene
Tssr129056 14 61305267 to 61305312 45 - TSS region transcription start site region 129056
Tssr129057 14 61305317 to 61305340 23 - TSS region transcription start site region 129057
Tssr129058 14 61305358 to 61305370 12 - TSS region transcription start site region 129058
Tssr125974 14 61305405 to 61305417 12 + TSS region transcription start site region 125974
Arl11 14 61309753 to 61311936 2183 + protein coding gene ADP-ribosylation factor-like 11
Tssr125975 14 61309806 to 61309813 7 + TSS region transcription start site region 125975
Tssr125976 14 61309819 to 61309855 36 + TSS region transcription start site region 125976
Tssr125977 14 61309860 to 61309871 11 + TSS region transcription start site region 125977
Gm5461 14 61324852 to 61325810 958 - pseudogene predicted gene 5461
Tssr129059 14 61325893 to 61325894 1 - TSS region transcription start site region 129059
Ebpl 14 61339763 to 61360445 20682 - protein coding gene emopamil binding protein-like
Gm25716 14 61342964 to 61343067 103 - snRNA gene predicted gene, 25716
Cpgi6580 14 61360098 to 61360542 444 CpG island CpG island 6580
Tssr129060 14 61360304 to 61360319 15 - TSS region transcription start site region 129060
Tssr129061 14 61360334 to 61360351 17 - TSS region transcription start site region 129061
Tssr129062 14 61360374 to 61360385 11 - TSS region transcription start site region 129062
Tssr129063 14 61360395 to 61360462 67 - TSS region transcription start site region 129063
Kpna3 14 61365211 to 61439874 74663 - protein coding gene karyopherin (importin) alpha 3
Tssr129064 14 61365513 to 61365532 19 - TSS region transcription start site region 129064
Tssr129065 14 61366620 to 61366642 22 - TSS region transcription start site region 129065
Tssr129066 14 61366669 to 61366684 15 - TSS region transcription start site region 129066
Tssr129067 14 61370443 to 61370480 37 - TSS region transcription start site region 129067
Tssr129068 14 61370514 to 61370531 17 - TSS region transcription start site region 129068
Tssr129069 14 61370732 to 61370754 22 - TSS region transcription start site region 129069
Tssr129070 14 61370757 to 61370772 15 - TSS region transcription start site region 129070
Tssr129071 14 61370895 to 61370925 30 - TSS region transcription start site region 129071
Tssr129072 14 61374322 to 61374340 18 - TSS region transcription start site region 129072
Tssr125978 14 61380312 to 61380313 1 + TSS region transcription start site region 125978
Tssr129073 14 61411066 to 61411104 38 - TSS region transcription start site region 129073
Tssr129074 14 61419701 to 61419707 6 - TSS region transcription start site region 129074
Tssr129075 14 61420837 to 61420840 3 - TSS region transcription start site region 129075
Tssr129076 14 61436799 to 61436810 11 - TSS region transcription start site region 129076
Tssr129077 14 61437048 to 61437054 6 - TSS region transcription start site region 129077
Tssr129078 14 61438331 to 61438334 3 - TSS region transcription start site region 129078
Cpgi6581 14 61439127 to 61440474 1347 CpG island CpG island 6581
Tssr129079 14 61439809 to 61439828 19 - TSS region transcription start site region 129079
Tssr129080 14 61439831 to 61439869 38 - TSS region transcription start site region 129080
Tssr129081 14 61440025 to 61440041 16 - TSS region transcription start site region 129081
Tssr129082 14 61440063 to 61440102 39 - TSS region transcription start site region 129082
2900024I21Rik 14 61448487 to 61450136 1649 unclassified gene RIKEN cDNA 2900024I21 gene
Gm49298 14 61459267 to 61459721 454 + pseudogene predicted gene, 49298
Rps12-ps2 14 61466968 to 61467366 398 - pseudogene ribosomal protein S12, pseudogene 2
Gm41169 14 61472841 to 61490398 17557 + lncRNA gene predicted gene, 41169
4930556J02Rik 14 61492688 to 61500382 7694 + lincRNA gene RIKEN cDNA 4930556J02 gene
Tssr125979 14 61492691 to 61492700 9 + TSS region transcription start site region 125979
Tssr125980 14 61492713 to 61492721 8 + TSS region transcription start site region 125980
Tssr125981 14 61492731 to 61492741 10 + TSS region transcription start site region 125981
Tssr125982 14 61519349 to 61519383 34 + TSS region transcription start site region 125982