Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:59944573-61745478

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264 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recrq10 14 28200000 to 60900000 32700000 QTL recombination rate in male meiosis QTL 10
Atp8a2 14 59647320 to 60177987 530667 - protein coding gene ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
Tssr129023 14 60027056 to 60027061 5 - TSS region transcription start site region 129023
Gm9013 14 60039610 to 60040491 881 - pseudogene predicted gene 9013
D14Mit65 14 60075071 to 60075202 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 65
Cpgi6564 14 60086528 to 60086939 411 CpG island CpG island 6564
Tssr129024 14 60086832 to 60086890 58 - TSS region transcription start site region 129024
Tssr129025 14 60086892 to 60086912 20 - TSS region transcription start site region 129025
4930563I02Rik 14 60087071 to 60096093 9022 + antisense lncRNA gene RIKEN cDNA 4930563I02 gene
Tssr129026 14 60087347 to 60087353 6 - TSS region transcription start site region 129026
Tssr129027 14 60087362 to 60087382 20 - TSS region transcription start site region 129027
Tssr129028 14 60087397 to 60087404 7 - TSS region transcription start site region 129028
Tssr125918 14 60087502 to 60087514 12 + TSS region transcription start site region 125918
Tssr125919 14 60087529 to 60087546 17 + TSS region transcription start site region 125919
D14Mit274 14 60093716 to 60093836 120 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-274
Tssr129029 14 60121717 to 60121749 32 - TSS region transcription start site region 129029
Tssr129030 14 60121757 to 60121764 7 - TSS region transcription start site region 129030
Gm6913 14 60141063 to 60141410 347 + pseudogene predicted gene 6913
Gm16261 14 60154151 to 60154355 204 + pseudogene predicted gene 16261
Tssr129031 14 60165930 to 60165942 12 - TSS region transcription start site region 129031
Gm41164 14 60166877 to 60170693 3816 + lncRNA gene predicted gene, 41164
Gm46456 14 60170783 to 60172120 1337 + lncRNA gene predicted gene, 46456
Gm33582 14 60173101 to 60180320 7219 + lncRNA gene predicted gene, 33582
Cpgi6565 14 60176608 to 60178035 1427 CpG island CpG island 6565
Tssr125920 14 60177283 to 60177309 26 + TSS region transcription start site region 125920
Tssr125921 14 60177377 to 60177385 8 + TSS region transcription start site region 125921
Tssr129032 14 60177482 to 60177559 77 - TSS region transcription start site region 129032
Tssr129033 14 60177567 to 60177618 51 - TSS region transcription start site region 129033
Tssr125922 14 60177642 to 60177652 10 + TSS region transcription start site region 125922
Tssr129034 14 60178051 to 60178084 33 - TSS region transcription start site region 129034
Tssr129035 14 60197173 to 60197185 12 - TSS region transcription start site region 129035
Tssr125923 14 60197255 to 60197268 13 + TSS region transcription start site region 125923
Tssr125924 14 60197284 to 60197294 10 + TSS region transcription start site region 125924
Tssr125925 14 60197299 to 60197307 8 + TSS region transcription start site region 125925
Gm49336 14 60205282 to 60251507 46225 - protein coding gene predicted gene, 49336
Tssr125926 14 60209418 to 60209425 7 + TSS region transcription start site region 125926
Gm47694 14 60210974 to 60216419 5445 - unclassified gene predicted gene, 47694
Nupl1 14 60219468 to 60251378 31910 - protein coding gene nucleoporin like 1
BC010981 14 60223974 to 60227379 3405 unclassified gene cDNA sequence BC010981
Mir719 14 60228806 to 60228915 109 - miRNA gene microRNA 719
Cpgi6566 14 60250878 to 60252072 1194 CpG island CpG island 6566
Tssr129036 14 60251354 to 60251365 11 - TSS region transcription start site region 129036
Tssr129037 14 60251375 to 60251445 70 - TSS region transcription start site region 129037
Tssr129038 14 60251447 to 60251458 11 - TSS region transcription start site region 129038
Tssr129039 14 60251473 to 60251484 11 - TSS region transcription start site region 129039
Gm38641 14 60251474 to 60263907 12433 + lncRNA gene predicted gene, 38641
Cpgi6567 14 60265029 to 60265726 697 CpG island CpG island 6567
Tssr125927 14 60265189 to 60265215 26 + TSS region transcription start site region 125927
Tssr125928 14 60265216 to 60265336 120 + TSS region transcription start site region 125928
Mtmr6 14 60265228 to 60302370 37142 + protein coding gene myotubularin related protein 6
Tssr125929 14 60269393 to 60269406 13 + TSS region transcription start site region 125929
Tssr125930 14 60277147 to 60277165 18 + TSS region transcription start site region 125930
Tssr125931 14 60299226 to 60299233 7 + TSS region transcription start site region 125931
Gm34874 14 60316479 to 60343479 27000 - lncRNA gene predicted gene, 34874
Amer2 14 60373297 to 60388197 14900 + protein coding gene APC membrane recruitment 2
Gm34935 14 60376691 to 60377454 763 - lncRNA gene predicted gene, 34935
Tssr125932 14 60377583 to 60377594 11 + TSS region transcription start site region 125932
Tssr125933 14 60377603 to 60377610 7 + TSS region transcription start site region 125933
Tssr125934 14 60377680 to 60377703 23 + TSS region transcription start site region 125934
Tssr125935 14 60377707 to 60377742 35 + TSS region transcription start site region 125935
Cpgi6568 14 60377881 to 60380058 2177 CpG island CpG island 6568
Tssr125936 14 60378242 to 60378292 50 + TSS region transcription start site region 125936
Tssr125937 14 60378295 to 60378371 76 + TSS region transcription start site region 125937
Tssr4442 14 60379422 to 60379452 30 - TSS region transcription start site region 4442
Tssr125938 14 60382768 to 60382771 3 + TSS region transcription start site region 125938
2810037O22Rik 14 60385983 to 60388192 2209 unclassified gene RIKEN cDNA 2810037O22 gene
Tssr125939 14 60386517 to 60386520 3 + TSS region transcription start site region 125939
4930551I20Rik 14 60399136 to 60399458 322 unclassified gene RIKEN cDNA 4930551I20 gene
D14Mit66 14 60408184 to 60408330 146 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 66
Tssr129040 14 60425327 to 60425329 2 - TSS region transcription start site region 129040
Gm6066 14 60441979 to 60442453 474 + pseudogene predicted gene 6066
Tssr129041 14 60444256 to 60444297 41 - TSS region transcription start site region 129041
Tssr125940 14 60485157 to 60485168 11 + TSS region transcription start site region 125940
Cpgi6569 14 60485165 to 60485905 740 CpG island CpG island 6569
Tssr125941 14 60485171 to 60485189 18 + TSS region transcription start site region 125941
Tssr125942 14 60485195 to 60485204 9 + TSS region transcription start site region 125942
Gm29266 14 60485208 to 60599031 113823 + lincRNA gene predicted gene 29266
Tssr129042 14 60485638 to 60485649 11 - TSS region transcription start site region 129042
Tssr125943 14 60489844 to 60489846 2 + TSS region transcription start site region 125943
Tssr125944 14 60506556 to 60506568 12 + TSS region transcription start site region 125944
Gm47810 14 60596161 to 60596902 741 - pseudogene predicted gene, 47810
Gm41166 14 60615932 to 60623794 7862 - lncRNA gene predicted gene, 41166
Spata13 14 60634001 to 60764556 130555 + protein coding gene spermatogenesis associated 13
Cpgi6570 14 60634074 to 60635396 1322 CpG island CpG island 6570
Tssr125945 14 60634719 to 60634776 57 + TSS region transcription start site region 125945
Tssr125946 14 60634779 to 60634790 11 + TSS region transcription start site region 125946
Tssr125947 14 60635878 to 60635882 4 + TSS region transcription start site region 125947
Gm41165 14 60678629 to 60684864 6235 - lncRNA gene predicted gene, 41165
Tssr125948 14 60702914 to 60702931 17 + TSS region transcription start site region 125948
Tssr125949 14 60702946 to 60702971 25 + TSS region transcription start site region 125949
Tssr125950 14 60709311 to 60709336 25 + TSS region transcription start site region 125950
Tssr125951 14 60709345 to 60709358 13 + TSS region transcription start site region 125951
Tssr125952 14 60709395 to 60709483 88 + TSS region transcription start site region 125952
Tssr125953 14 60709491 to 60709519 28 + TSS region transcription start site region 125953
Tssr125954 14 60709520 to 60709533 13 + TSS region transcription start site region 125954
Tssr125955 14 60732994 to 60733009 15 + TSS region transcription start site region 125955
Tssr125956 14 60733026 to 60733042 16 + TSS region transcription start site region 125956
Tssr125957 14 60750159 to 60750171 12 + TSS region transcription start site region 125957
Tssr125958 14 60750207 to 60750222 15 + TSS region transcription start site region 125958
Cpgi6571 14 60756385 to 60756563 178 CpG island CpG island 6571
Tssr125959 14 60762564 to 60762576 12 + TSS region transcription start site region 125959
Tssr125960 14 60763784 to 60763788 4 + TSS region transcription start site region 125960
Gm34997 14 60764647 to 60767995 3348 - lncRNA gene predicted gene, 34997
Tssr125961 14 60768081 to 60768094 13 + TSS region transcription start site region 125961
Tssr125962 14 60768098 to 60768118 20 + TSS region transcription start site region 125962
Tssr125963 14 60768120 to 60768137 17 + TSS region transcription start site region 125963
C1qtnf9 14 60768134 to 60780869 12735 + protein coding gene C1q and tumor necrosis factor related protein 9
Mipepos 14 60776329 to 60784581 8252 - antisense lncRNA gene mitochondrial intermediate peptidase, opposite strand
Cpgi6572 14 60784251 to 60785234 983 CpG island CpG island 6572
Tssr125964 14 60784558 to 60784675 117 + TSS region transcription start site region 125964
Mipep 14 60784573 to 60905478 120905 + protein coding gene mitochondrial intermediate peptidase
Tssr129043 14 60784574 to 60784586 12 - TSS region transcription start site region 129043
Tssr125965 14 60784680 to 60784694 14 + TSS region transcription start site region 125965
Tnfrsf19 14 60963875 to 61046490 82615 - protein coding gene tumor necrosis factor receptor superfamily, member 19
Tssr129044 14 61023899 to 61023902 3 - TSS region transcription start site region 129044
Cpgi6573 14 61037595 to 61038035 440 CpG island CpG island 6573
Tssr129045 14 61037937 to 61037998 61 - TSS region transcription start site region 129045
Tssr125966 14 61038039 to 61038050 11 + TSS region transcription start site region 125966
Gm41167 14 61038041 to 61050622 12581 + lncRNA gene predicted gene, 41167
Cpgi6574 14 61045978 to 61046852 874 CpG island CpG island 6574
Tssr129046 14 61046154 to 61046174 20 - TSS region transcription start site region 129046
Tssr129047 14 61046230 to 61046241 11 - TSS region transcription start site region 129047
Tssr129048 14 61046295 to 61046306 11 - TSS region transcription start site region 129048
Tssr129049 14 61046462 to 61046487 25 - TSS region transcription start site region 129049
Tssr129050 14 61046494 to 61046523 29 - TSS region transcription start site region 129050
Tssr4443 14 61046542 to 61046553 11 - TSS region transcription start site region 4443
Tssr125967 14 61046647 to 61046657 10 + TSS region transcription start site region 125967
Tssr129051 14 61046863 to 61046874 11 - TSS region transcription start site region 129051
Gm41168 14 61056209 to 61079508 23299 + lincRNA gene predicted gene, 41168
Cpgi6575 14 61056495 to 61056765 270 CpG island CpG island 6575
Tssr125968 14 61129378 to 61129388 10 + TSS region transcription start site region 125968
Cpgi6576 14 61138425 to 61138825 400 CpG island CpG island 6576
Tssr125969 14 61138445 to 61138495 50 + TSS region transcription start site region 125969
Sacs 14 61138457 to 61240695 102238 + protein coding gene sacsin
Tssr4444 14 61147503 to 61147532 29 + TSS region transcription start site region 4444
C030009H01Rik 14 61170756 to 61173527 2771 unclassified gene RIKEN cDNA C030009H01 gene
Cpgi6577 14 61172525 to 61173606 1081 CpG island CpG island 6577
Tssr125970 14 61172966 to 61173018 52 + TSS region transcription start site region 125970
Tssr125971 14 61173023 to 61173081 58 + TSS region transcription start site region 125971
Tssr125972 14 61173086 to 61173100 14 + TSS region transcription start site region 125972
Tssr129052 14 61173492 to 61173497 5 - TSS region transcription start site region 129052
Tssr125973 14 61174881 to 61174904 23 + TSS region transcription start site region 125973
Sgcg 14 61219115 to 61258490 39375 - protein coding gene sarcoglycan, gamma (dystrophin-associated glycoprotein)
Tssr129053 14 61257990 to 61258014 24 - TSS region transcription start site region 129053
Tssr129054 14 61258383 to 61258465 82 - TSS region transcription start site region 129054
Tssr129055 14 61258484 to 61258493 9 - TSS region transcription start site region 129055
Gm17778 14 61272004 to 61276093 4089 + protein coding gene predicted gene, 17778
Cpgi6578 14 61274687 to 61275368 681 CpG island CpG island 6578
Gm19097 14 61283780 to 61284788 1008 - pseudogene predicted gene, 19097
Cpgi6579 14 61288676 to 61289210 534 CpG island CpG island 6579
1700109G14Rik 14 61292983 to 61305334 12351 - antisense lncRNA gene RIKEN cDNA 1700109G14 gene
Tssr129056 14 61305267 to 61305312 45 - TSS region transcription start site region 129056
Tssr129057 14 61305317 to 61305340 23 - TSS region transcription start site region 129057
Tssr129058 14 61305358 to 61305370 12 - TSS region transcription start site region 129058
Tssr125974 14 61305405 to 61305417 12 + TSS region transcription start site region 125974
Arl11 14 61309753 to 61311936 2183 + protein coding gene ADP-ribosylation factor-like 11
Tssr125975 14 61309806 to 61309813 7 + TSS region transcription start site region 125975
Tssr125976 14 61309819 to 61309855 36 + TSS region transcription start site region 125976
Tssr125977 14 61309860 to 61309871 11 + TSS region transcription start site region 125977
Gm5461 14 61324852 to 61325810 958 - pseudogene predicted gene 5461
Tssr129059 14 61325893 to 61325894 1 - TSS region transcription start site region 129059
Ebpl 14 61339763 to 61360445 20682 - protein coding gene emopamil binding protein-like
Gm25716 14 61342964 to 61343067 103 - snRNA gene predicted gene, 25716
Cpgi6580 14 61360098 to 61360542 444 CpG island CpG island 6580
Tssr129060 14 61360304 to 61360319 15 - TSS region transcription start site region 129060
Tssr129061 14 61360334 to 61360351 17 - TSS region transcription start site region 129061
Tssr129062 14 61360374 to 61360385 11 - TSS region transcription start site region 129062
Tssr129063 14 61360395 to 61360462 67 - TSS region transcription start site region 129063
Kpna3 14 61365211 to 61439874 74663 - protein coding gene karyopherin (importin) alpha 3
Tssr129064 14 61365513 to 61365532 19 - TSS region transcription start site region 129064
Tssr129065 14 61366620 to 61366642 22 - TSS region transcription start site region 129065
Tssr129066 14 61366669 to 61366684 15 - TSS region transcription start site region 129066
Tssr129067 14 61370443 to 61370480 37 - TSS region transcription start site region 129067
Tssr129068 14 61370514 to 61370531 17 - TSS region transcription start site region 129068
Tssr129069 14 61370732 to 61370754 22 - TSS region transcription start site region 129069
Tssr129070 14 61370757 to 61370772 15 - TSS region transcription start site region 129070
Tssr129071 14 61370895 to 61370925 30 - TSS region transcription start site region 129071
Tssr129072 14 61374322 to 61374340 18 - TSS region transcription start site region 129072
Tssr125978 14 61380312 to 61380313 1 + TSS region transcription start site region 125978
Tssr129073 14 61411066 to 61411104 38 - TSS region transcription start site region 129073
Tssr129074 14 61419701 to 61419707 6 - TSS region transcription start site region 129074
Tssr129075 14 61420837 to 61420840 3 - TSS region transcription start site region 129075
Tssr129076 14 61436799 to 61436810 11 - TSS region transcription start site region 129076
Tssr129077 14 61437048 to 61437054 6 - TSS region transcription start site region 129077
Tssr129078 14 61438331 to 61438334 3 - TSS region transcription start site region 129078
Cpgi6581 14 61439127 to 61440474 1347 CpG island CpG island 6581
Tssr129079 14 61439809 to 61439828 19 - TSS region transcription start site region 129079
Tssr129080 14 61439831 to 61439869 38 - TSS region transcription start site region 129080
Tssr129081 14 61440025 to 61440041 16 - TSS region transcription start site region 129081
Tssr129082 14 61440063 to 61440102 39 - TSS region transcription start site region 129082
2900024I21Rik 14 61448487 to 61450136 1649 unclassified gene RIKEN cDNA 2900024I21 gene
Gm49298 14 61459267 to 61459721 454 + pseudogene predicted gene, 49298
Rps12-ps2 14 61466968 to 61467366 398 - pseudogene ribosomal protein S12, pseudogene 2
Gm41169 14 61472841 to 61490398 17557 + lncRNA gene predicted gene, 41169
4930556J02Rik 14 61492688 to 61500382 7694 + lincRNA gene RIKEN cDNA 4930556J02 gene
Tssr125979 14 61492691 to 61492700 9 + TSS region transcription start site region 125979
Tssr125980 14 61492713 to 61492721 8 + TSS region transcription start site region 125980
Tssr125981 14 61492731 to 61492741 10 + TSS region transcription start site region 125981
Tssr125982 14 61519349 to 61519383 34 + TSS region transcription start site region 125982
Spryd7 14 61531993 to 61556886 24893 - protein coding gene SPRY domain containing 7