Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:58770704-59631837

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TTagt2 14 58818153 to 58818226 73 - tRNA gene nuclear encoded tRNA threonine 2 (anticodon AGT)
Gm9022 14 58879031 to 58880245 1214 - pseudogene predicted gene 9022
Cpgi6557 14 58893459 to 58893664 205 CpG island CpG island 6557
Tssr125896 14 58893465 to 58893469 4 + TSS region transcription start site region 125896
Rpl13-ps3 14 58893506 to 58894129 623 + pseudogene ribosomal protein L13, pseudogene 3
Gm48447 14 58912104 to 58939867 27763 + lincRNA gene predicted gene, 48447
Gm33472 14 59043940 to 59045944 2004 - lincRNA gene predicted gene, 33472
Gm41162 14 59046121 to 59067224 21103 + lincRNA gene predicted gene, 41162
Cpgi6558 14 59076250 to 59076503 253 CpG island CpG island 6558
Gm48453 14 59084136 to 59087118 2982 - lincRNA gene predicted gene, 48453
1700129C05Rik 14 59133040 to 59142893 9853 - protein coding gene RIKEN cDNA 1700129C05 gene
Tssr128990 14 59142886 to 59142898 12 - TSS region transcription start site region 128990
Gm5142 14 59158503 to 59178749 20246 - protein coding gene predicted gene 5142
Tssr128991 14 59178756 to 59178773 17 - TSS region transcription start site region 128991
Tssr128992 14 59178776 to 59178781 5 - TSS region transcription start site region 128992
Tssr125897 14 59178884 to 59178892 8 + TSS region transcription start site region 125897
Cpgi6559 14 59200704 to 59201837 1133 CpG island CpG island 6559
Tssr125898 14 59201031 to 59201053 22 + TSS region transcription start site region 125898
Rcbtb1 14 59201209 to 59237265 36056 + protein coding gene regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Tssr125899 14 59201227 to 59201267 40 + TSS region transcription start site region 125899
Tssr125900 14 59201274 to 59201313 39 + TSS region transcription start site region 125900
Tssr125901 14 59201418 to 59201495 77 + TSS region transcription start site region 125901
Tssr125902 14 59201965 to 59201968 3 + TSS region transcription start site region 125902
Phf11-ps 14 59244441 to 59260216 15775 - pseudogene PHD finger protein 11, pseudogene
Tssr128993 14 59260185 to 59260191 6 - TSS region transcription start site region 128993
Tssr128994 14 59260203 to 59260228 25 - TSS region transcription start site region 128994
Phf11a 14 59276913 to 59297522 20609 - protein coding gene PHD finger protein 11A
Tssr128995 14 59297510 to 59297529 19 - TSS region transcription start site region 128995
Phf11b 14 59320964 to 59341351 20387 - protein coding gene PHD finger protein 11B
Tssr128996 14 59323197 to 59323233 36 - TSS region transcription start site region 128996
Tssr128997 14 59324151 to 59324172 21 - TSS region transcription start site region 128997
Tssr128998 14 59341325 to 59341358 33 - TSS region transcription start site region 128998
Phf11d 14 59347407 to 59365470 18063 - protein coding gene PHD finger protein 11D
Tssr128999 14 59365420 to 59365431 11 - TSS region transcription start site region 128999
Tssr129000 14 59365434 to 59365461 27 - TSS region transcription start site region 129000
Tssr129001 14 59365465 to 59365487 22 - TSS region transcription start site region 129001
Tssr129002 14 59370540 to 59370555 15 - TSS region transcription start site region 129002
Tssr129003 14 59377622 to 59377626 4 - TSS region transcription start site region 129003
Gm45935 14 59380833 to 59440880 60047 - protein coding gene predicted gene, 45935
Phf11c 14 59380833 to 59393512 12679 - protein coding gene PHD finger protein 11C
Tssr129004 14 59397174 to 59397216 42 - TSS region transcription start site region 129004
Setdb2 14 59402009 to 59440880 38871 - protein coding gene SET domain, bifurcated 2
Tssr129005 14 59407757 to 59407762 5 - TSS region transcription start site region 129005
Tssr129006 14 59412155 to 59412174 19 - TSS region transcription start site region 129006
Gm16301 14 59414270 to 59414564 294 - pseudogene predicted gene 16301
Tssr129007 14 59419069 to 59419099 30 - TSS region transcription start site region 129007
Tssr4441 14 59419197 to 59419208 11 - TSS region transcription start site region 4441
Cpgi6560 14 59440572 to 59441331 759 CpG island CpG island 6560
Tssr125903 14 59440572 to 59440582 10 + TSS region transcription start site region 125903
Tssr129008 14 59440779 to 59440887 108 - TSS region transcription start site region 129008
Tssr125904 14 59440947 to 59440996 49 + TSS region transcription start site region 125904
Cab39l 14 59440955 to 59548903 107948 + protein coding gene calcium binding protein 39-like
Tssr129009 14 59441088 to 59441097 9 - TSS region transcription start site region 129009
Tssr129010 14 59441103 to 59441108 5 - TSS region transcription start site region 129010
Tssr129011 14 59441302 to 59441307 5 - TSS region transcription start site region 129011
Tssr129012 14 59441309 to 59441310 1 - TSS region transcription start site region 129012
Tssr129013 14 59441311 to 59441317 6 - TSS region transcription start site region 129013
Tssr125905 14 59478835 to 59478852 17 + TSS region transcription start site region 125905
Tssr125906 14 59478864 to 59478923 59 + TSS region transcription start site region 125906
Tssr125907 14 59478932 to 59478991 59 + TSS region transcription start site region 125907
Tssr125908 14 59479014 to 59479032 18 + TSS region transcription start site region 125908
Tssr125909 14 59491248 to 59491263 15 + TSS region transcription start site region 125909
Tssr125910 14 59501886 to 59501903 17 + TSS region transcription start site region 125910
Tssr125911 14 59526731 to 59526752 21 + TSS region transcription start site region 125911
Tssr129014 14 59552521 to 59552530 9 - TSS region transcription start site region 129014
Tssr129015 14 59557072 to 59557079 7 - TSS region transcription start site region 129015
Tssr125912 14 59557445 to 59557470 25 + TSS region transcription start site region 125912
Cdadc1 14 59559388 to 59597959 38571 - protein coding gene cytidine and dCMP deaminase domain containing 1
Gm18835 14 59570747 to 59571614 867 - pseudogene predicted gene, 18835
Tssr129016 14 59571993 to 59572000 7 - TSS region transcription start site region 129016
Cpgi6561 14 59597358 to 59598418 1060 CpG island CpG island 6561
Tssr129017 14 59597898 to 59597904 6 - TSS region transcription start site region 129017
Tssr129018 14 59597915 to 59597961 46 - TSS region transcription start site region 129018
Tssr129019 14 59597964 to 59597973 9 - TSS region transcription start site region 129019
Tssr125913 14 59598042 to 59598053 11 + TSS region transcription start site region 125913
Gm18073 14 59622123 to 59622670 547 - pseudogene predicted gene, 18073
Cpgi6562 14 59624964 to 59626850 1886 CpG island CpG island 6562
Tssr125914 14 59625278 to 59625291 13 + TSS region transcription start site region 125914
Tssr125915 14 59625302 to 59625318 16 + TSS region transcription start site region 125915
Shisa2 14 59625308 to 59631660 6352 + protein coding gene shisa family member 2
Tssr125916 14 59625560 to 59625586 26 + TSS region transcription start site region 125916
Tssr125917 14 59626309 to 59626320 11 + TSS region transcription start site region 125917
Tssr129020 14 59629400 to 59629437 37 - TSS region transcription start site region 129020
Cpgi6563 14 59629456 to 59630311 855 CpG island CpG island 6563