Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:58540934-60448904

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcbip1 14 47097793 to 59725144 12627351 QTL hexachlorobenzene induced porphyria 1
Gm25614 14 58650268 to 58650400 132 - snoRNA gene predicted gene, 25614
n-TTagt2 14 58818153 to 58818226 73 - tRNA gene nuclear encoded tRNA threonine 2 (anticodon AGT)
Gm9022 14 58879031 to 58880245 1214 - pseudogene predicted gene 9022
Cpgi6557 14 58893459 to 58893664 205 CpG island CpG island 6557
Tssr125896 14 58893465 to 58893469 4 + TSS region transcription start site region 125896
Rpl13-ps3 14 58893506 to 58894129 623 + pseudogene ribosomal protein L13, pseudogene 3
Gm48447 14 58912104 to 58939867 27763 + lincRNA gene predicted gene, 48447
Gm33472 14 59043940 to 59045944 2004 - lincRNA gene predicted gene, 33472
Gm41162 14 59046121 to 59067224 21103 + lincRNA gene predicted gene, 41162
Cpgi6558 14 59076250 to 59076503 253 CpG island CpG island 6558
Gm48453 14 59084136 to 59087118 2982 - lincRNA gene predicted gene, 48453
1700129C05Rik 14 59133040 to 59142893 9853 - protein coding gene RIKEN cDNA 1700129C05 gene
Tssr128990 14 59142886 to 59142898 12 - TSS region transcription start site region 128990
Gm5142 14 59158503 to 59178749 20246 - protein coding gene predicted gene 5142
Tssr128991 14 59178756 to 59178773 17 - TSS region transcription start site region 128991
Tssr128992 14 59178776 to 59178781 5 - TSS region transcription start site region 128992
Tssr125897 14 59178884 to 59178892 8 + TSS region transcription start site region 125897
Cpgi6559 14 59200704 to 59201837 1133 CpG island CpG island 6559
Tssr125898 14 59201031 to 59201053 22 + TSS region transcription start site region 125898
Rcbtb1 14 59201209 to 59237265 36056 + protein coding gene regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Tssr125899 14 59201227 to 59201267 40 + TSS region transcription start site region 125899
Tssr125900 14 59201274 to 59201313 39 + TSS region transcription start site region 125900
Tssr125901 14 59201418 to 59201495 77 + TSS region transcription start site region 125901
Tssr125902 14 59201965 to 59201968 3 + TSS region transcription start site region 125902
Phf11-ps 14 59244441 to 59260216 15775 - pseudogene PHD finger protein 11, pseudogene
Tssr128993 14 59260185 to 59260191 6 - TSS region transcription start site region 128993
Tssr128994 14 59260203 to 59260228 25 - TSS region transcription start site region 128994
Phf11a 14 59276913 to 59297522 20609 - protein coding gene PHD finger protein 11A
Tssr128995 14 59297510 to 59297529 19 - TSS region transcription start site region 128995
Phf11b 14 59320964 to 59341351 20387 - protein coding gene PHD finger protein 11B
Tssr128996 14 59323197 to 59323233 36 - TSS region transcription start site region 128996
Tssr128997 14 59324151 to 59324172 21 - TSS region transcription start site region 128997
Tssr128998 14 59341325 to 59341358 33 - TSS region transcription start site region 128998
Phf11d 14 59347407 to 59365470 18063 - protein coding gene PHD finger protein 11D
Tssr128999 14 59365420 to 59365431 11 - TSS region transcription start site region 128999
Tssr129000 14 59365434 to 59365461 27 - TSS region transcription start site region 129000
Tssr129001 14 59365465 to 59365487 22 - TSS region transcription start site region 129001
Tssr129002 14 59370540 to 59370555 15 - TSS region transcription start site region 129002
Tssr129003 14 59377622 to 59377626 4 - TSS region transcription start site region 129003
Phf11c 14 59380833 to 59393512 12679 - protein coding gene PHD finger protein 11C
Gm45935 14 59380833 to 59440880 60047 - protein coding gene predicted gene, 45935
Tssr129004 14 59397174 to 59397216 42 - TSS region transcription start site region 129004
Setdb2 14 59402009 to 59440880 38871 - protein coding gene SET domain, bifurcated 2
Tssr129005 14 59407757 to 59407762 5 - TSS region transcription start site region 129005
Tssr129006 14 59412155 to 59412174 19 - TSS region transcription start site region 129006
Gm16301 14 59414270 to 59414564 294 - pseudogene predicted gene 16301
Tssr129007 14 59419069 to 59419099 30 - TSS region transcription start site region 129007
Tssr4441 14 59419197 to 59419208 11 - TSS region transcription start site region 4441
Tssr125903 14 59440572 to 59440582 10 + TSS region transcription start site region 125903
Cpgi6560 14 59440572 to 59441331 759 CpG island CpG island 6560
Tssr129008 14 59440779 to 59440887 108 - TSS region transcription start site region 129008
Tssr125904 14 59440947 to 59440996 49 + TSS region transcription start site region 125904
Cab39l 14 59440955 to 59548903 107948 + protein coding gene calcium binding protein 39-like
Tssr129009 14 59441088 to 59441097 9 - TSS region transcription start site region 129009
Tssr129010 14 59441103 to 59441108 5 - TSS region transcription start site region 129010
Tssr129011 14 59441302 to 59441307 5 - TSS region transcription start site region 129011
Tssr129012 14 59441309 to 59441310 1 - TSS region transcription start site region 129012
Tssr129013 14 59441311 to 59441317 6 - TSS region transcription start site region 129013
Tssr125905 14 59478835 to 59478852 17 + TSS region transcription start site region 125905
Tssr125906 14 59478864 to 59478923 59 + TSS region transcription start site region 125906
Tssr125907 14 59478932 to 59478991 59 + TSS region transcription start site region 125907
Tssr125908 14 59479014 to 59479032 18 + TSS region transcription start site region 125908
Tssr125909 14 59491248 to 59491263 15 + TSS region transcription start site region 125909
Tssr125910 14 59501886 to 59501903 17 + TSS region transcription start site region 125910
Tssr125911 14 59526731 to 59526752 21 + TSS region transcription start site region 125911
Tssr129014 14 59552521 to 59552530 9 - TSS region transcription start site region 129014
Tssr129015 14 59557072 to 59557079 7 - TSS region transcription start site region 129015
Tssr125912 14 59557445 to 59557470 25 + TSS region transcription start site region 125912
Cdadc1 14 59559388 to 59597959 38571 - protein coding gene cytidine and dCMP deaminase domain containing 1
Gm18835 14 59570747 to 59571614 867 - pseudogene predicted gene, 18835
Tssr129016 14 59571993 to 59572000 7 - TSS region transcription start site region 129016
Cpgi6561 14 59597358 to 59598418 1060 CpG island CpG island 6561
Tssr129017 14 59597898 to 59597904 6 - TSS region transcription start site region 129017
Tssr129018 14 59597915 to 59597961 46 - TSS region transcription start site region 129018
Tssr129019 14 59597964 to 59597973 9 - TSS region transcription start site region 129019
Tssr125913 14 59598042 to 59598053 11 + TSS region transcription start site region 125913
Gm18073 14 59622123 to 59622670 547 - pseudogene predicted gene, 18073
Cpgi6562 14 59624964 to 59626850 1886 CpG island CpG island 6562
Tssr125914 14 59625278 to 59625291 13 + TSS region transcription start site region 125914
Tssr125915 14 59625302 to 59625318 16 + TSS region transcription start site region 125915
Shisa2 14 59625308 to 59631660 6352 + protein coding gene shisa family member 2
Tssr125916 14 59625560 to 59625586 26 + TSS region transcription start site region 125916
Tssr125917 14 59626309 to 59626320 11 + TSS region transcription start site region 125917
Tssr129020 14 59629400 to 59629437 37 - TSS region transcription start site region 129020
Cpgi6563 14 59629456 to 59630311 855 CpG island CpG island 6563
BC059841 14 59640438 to 59643412 2974 unclassified gene cDNA sequence BC059841
Gm19716 14 59642548 to 59644384 1836 + pseudogene predicted gene, 19716
Tssr129021 14 59643538 to 59643541 3 - TSS region transcription start site region 129021
Spmo3 14 59643959 to 59644083 124 QTL sperm mobility 3
D14Mit234 14 59643959 to 59644083 124 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology 234
Atp8a2 14 59647320 to 60177987 530667 - protein coding gene ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
Tssr129022 14 59677542 to 59677586 44 - TSS region transcription start site region 129022
Skull21 14 59724967 to 59725144 177 QTL skull morphology 21
D14Mit5 14 59724967 to 59725144 177 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 5
Bglq15 14 59724967 to 59725144 177 QTL body growth late QTL 15
D14Mit113 14 59799821 to 59799969 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 113
Mors3 14 59799821 to 59799969 148 QTL modifier of obesity related sterility 3
Nilac8 14 59828398 to 59828596 198 QTL nicotine induced locomotor activity 8
D14Mit155 14 59828398 to 59828596 198 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 155
Bbaa21 14 59828398 to 59828596 198 QTL B.burgdorferi-associated arthritis 21
Tssr129023 14 60027056 to 60027061 5 - TSS region transcription start site region 129023
Gm9013 14 60039610 to 60040491 881 - pseudogene predicted gene 9013
D14Mit65 14 60075071 to 60075202 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 65
Cpgi6564 14 60086528 to 60086939 411 CpG island CpG island 6564
Tssr129024 14 60086832 to 60086890 58 - TSS region transcription start site region 129024
Tssr129025 14 60086892 to 60086912 20 - TSS region transcription start site region 129025
4930563I02Rik 14 60087071 to 60096093 9022 + antisense lncRNA gene RIKEN cDNA 4930563I02 gene
Tssr129026 14 60087347 to 60087353 6 - TSS region transcription start site region 129026
Tssr129027 14 60087362 to 60087382 20 - TSS region transcription start site region 129027
Tssr129028 14 60087397 to 60087404 7 - TSS region transcription start site region 129028
Tssr125918 14 60087502 to 60087514 12 + TSS region transcription start site region 125918
Tssr125919 14 60087529 to 60087546 17 + TSS region transcription start site region 125919
D14Mit274 14 60093716 to 60093836 120 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-274
Tssr129029 14 60121717 to 60121749 32 - TSS region transcription start site region 129029
Tssr129030 14 60121757 to 60121764 7 - TSS region transcription start site region 129030
Gm6913 14 60141063 to 60141410 347 + pseudogene predicted gene 6913
Gm16261 14 60154151 to 60154355 204 + pseudogene predicted gene 16261
Tssr129031 14 60165930 to 60165942 12 - TSS region transcription start site region 129031
Gm41164 14 60166877 to 60170693 3816 + lncRNA gene predicted gene, 41164
Gm46456 14 60170783 to 60172120 1337 + lncRNA gene predicted gene, 46456
Gm33582 14 60173101 to 60180320 7219 + lncRNA gene predicted gene, 33582
Cpgi6565 14 60176608 to 60178035 1427 CpG island CpG island 6565
Tssr125920 14 60177283 to 60177309 26 + TSS region transcription start site region 125920
Tssr125921 14 60177377 to 60177385 8 + TSS region transcription start site region 125921
Tssr129032 14 60177482 to 60177559 77 - TSS region transcription start site region 129032
Tssr129033 14 60177567 to 60177618 51 - TSS region transcription start site region 129033
Tssr125922 14 60177642 to 60177652 10 + TSS region transcription start site region 125922
Tssr129034 14 60178051 to 60178084 33 - TSS region transcription start site region 129034
Tssr129035 14 60197173 to 60197185 12 - TSS region transcription start site region 129035
Tssr125923 14 60197255 to 60197268 13 + TSS region transcription start site region 125923
Tssr125924 14 60197284 to 60197294 10 + TSS region transcription start site region 125924
Tssr125925 14 60197299 to 60197307 8 + TSS region transcription start site region 125925
Gm49336 14 60205282 to 60251507 46225 - protein coding gene predicted gene, 49336
Tssr125926 14 60209418 to 60209425 7 + TSS region transcription start site region 125926
Gm47694 14 60210974 to 60216419 5445 - unclassified gene predicted gene, 47694
Nupl1 14 60219468 to 60251378 31910 - protein coding gene nucleoporin like 1
BC010981 14 60223974 to 60227379 3405 unclassified gene cDNA sequence BC010981
Mir719 14 60228806 to 60228915 109 - miRNA gene microRNA 719
Cpgi6566 14 60250878 to 60252072 1194 CpG island CpG island 6566
Tssr129036 14 60251354 to 60251365 11 - TSS region transcription start site region 129036
Tssr129037 14 60251375 to 60251445 70 - TSS region transcription start site region 129037
Tssr129038 14 60251447 to 60251458 11 - TSS region transcription start site region 129038
Tssr129039 14 60251473 to 60251484 11 - TSS region transcription start site region 129039
Gm38641 14 60251474 to 60263907 12433 + lncRNA gene predicted gene, 38641
Cpgi6567 14 60265029 to 60265726 697 CpG island CpG island 6567
Tssr125927 14 60265189 to 60265215 26 + TSS region transcription start site region 125927
Tssr125928 14 60265216 to 60265336 120 + TSS region transcription start site region 125928
Mtmr6 14 60265228 to 60302370 37142 + protein coding gene myotubularin related protein 6
Tssr125929 14 60269393 to 60269406 13 + TSS region transcription start site region 125929
Tssr125930 14 60277147 to 60277165 18 + TSS region transcription start site region 125930
Tssr125931 14 60299226 to 60299233 7 + TSS region transcription start site region 125931
Gm34874 14 60316479 to 60343479 27000 - lncRNA gene predicted gene, 34874
Amer2 14 60373297 to 60388197 14900 + protein coding gene APC membrane recruitment 2
Gm34935 14 60376691 to 60377454 763 - lncRNA gene predicted gene, 34935
Tssr125932 14 60377583 to 60377594 11 + TSS region transcription start site region 125932
Tssr125933 14 60377603 to 60377610 7 + TSS region transcription start site region 125933
Tssr125934 14 60377680 to 60377703 23 + TSS region transcription start site region 125934
Tssr125935 14 60377707 to 60377742 35 + TSS region transcription start site region 125935
Cpgi6568 14 60377881 to 60380058 2177 CpG island CpG island 6568
Tssr125936 14 60378242 to 60378292 50 + TSS region transcription start site region 125936
Tssr125937 14 60378295 to 60378371 76 + TSS region transcription start site region 125937
Tssr4442 14 60379422 to 60379452 30 - TSS region transcription start site region 4442
Tssr125938 14 60382768 to 60382771 3 + TSS region transcription start site region 125938
2810037O22Rik 14 60385983 to 60388192 2209 unclassified gene RIKEN cDNA 2810037O22 gene
Tssr125939 14 60386517 to 60386520 3 + TSS region transcription start site region 125939
4930551I20Rik 14 60399136 to 60399458 322 unclassified gene RIKEN cDNA 4930551I20 gene
D14Mit66 14 60408184 to 60408330 146 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 66
Tssr129040 14 60425327 to 60425329 2 - TSS region transcription start site region 129040
Gm6066 14 60441979 to 60442453 474 + pseudogene predicted gene 6066
Tssr129041 14 60444256 to 60444297 41 - TSS region transcription start site region 129041