Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:57433216-58933222

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Modor2 14 24925824 to 57942312 33016488 QTL modifier of ocular retardation 2
Ift88 14 57424069 to 57517936 93867 + protein coding gene intraflagellar transport 88
Gm15836 14 57435721 to 57436513 792 - pseudogene predicted gene 15836
Ift88os 14 57506744 to 57510835 4091 - antisense lncRNA gene intraflagellar transport 88, opposite strand
AU020094 14 57523805 to 57524834 1029 unclassified gene expressed sequence AU020094
Cpgi6542 14 57524532 to 57526053 1521 CpG island CpG island 6542
Tssr125870 14 57524734 to 57524804 70 + TSS region transcription start site region 125870
Il17d 14 57524829 to 57543166 18337 + protein coding gene interleukin 17D
Tssr125871 14 57525052 to 57525105 53 + TSS region transcription start site region 125871
Tssr128966 14 57525456 to 57525467 11 - TSS region transcription start site region 128966
Tssr128967 14 57525499 to 57525525 26 - TSS region transcription start site region 128967
Tssr128968 14 57525569 to 57525645 76 - TSS region transcription start site region 128968
Tssr125872 14 57537487 to 57537494 7 + TSS region transcription start site region 125872
Cpgi6543 14 57542184 to 57542765 581 CpG island CpG island 6543
Eef1akmt1 14 57549596 to 57571569 21973 - protein coding gene EEF1A alpha lysine methyltransferase 1
Cpgi6544 14 57571365 to 57571768 403 CpG island CpG island 6544
Tssr128969 14 57571551 to 57571588 37 - TSS region transcription start site region 128969
Tssr125873 14 57571594 to 57571625 31 + TSS region transcription start site region 125873
1700039M10Rik 14 57571614 to 57572368 754 + bidirectional promoter lncRNA gene RIKEN cDNA 1700039M10 gene
Xpo4 14 57579755 to 57665512 85757 - protein coding gene exportin 4
Tssr128970 14 57598616 to 57598617 1 - TSS region transcription start site region 128970
Gm49361 14 57642077 to 57746103 104026 - protein coding gene predicted gene, 49361
Tssr128971 14 57662216 to 57662224 8 - TSS region transcription start site region 128971
Cpgi6545 14 57664298 to 57665686 1388 CpG island CpG island 6545
Tssr128972 14 57664926 to 57664934 8 - TSS region transcription start site region 128972
Tssr128973 14 57664954 to 57664995 41 - TSS region transcription start site region 128973
Tssr128974 14 57665192 to 57665260 68 - TSS region transcription start site region 128974
Lats2 14 57689662 to 57746123 56461 - protein coding gene large tumor suppressor 2
Gm26440 14 57697809 to 57697937 128 + snoRNA gene predicted gene, 26440
Gm20430 14 57698013 to 57698219 206 + pseudogene predicted gene 20430
Tssr125874 14 57702777 to 57702778 1 + TSS region transcription start site region 125874
Tssr128975 14 57718975 to 57718978 3 - TSS region transcription start site region 128975
Tssr128976 14 57744650 to 57744655 5 - TSS region transcription start site region 128976
Tssr125875 14 57744780 to 57744803 23 + TSS region transcription start site region 125875
Cpgi6546 14 57745269 to 57746569 1300 CpG island CpG island 6546
Tssr128977 14 57746044 to 57746144 100 - TSS region transcription start site region 128977
Tssr125876 14 57746148 to 57746195 47 + TSS region transcription start site region 125876
D14Mit261 14 57753925 to 57754016 91 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 261
Cpgi6547 14 57797946 to 57799041 1095 CpG island CpG island 6547
Tssr125877 14 57798156 to 57798180 24 + TSS region transcription start site region 125877
Tssr125878 14 57798182 to 57798216 34 + TSS region transcription start site region 125878
Sap18 14 57798189 to 57804980 6791 + protein coding gene Sin3-associated polypeptide 18
Mir3077 14 57798424 to 57798487 63 + miRNA gene microRNA 3077
Tssr125879 14 57798620 to 57798629 9 + TSS region transcription start site region 125879
Tssr125880 14 57798637 to 57798696 59 + TSS region transcription start site region 125880
Tssr125881 14 57798699 to 57798708 9 + TSS region transcription start site region 125881
Ska3 14 57806561 to 57826185 19624 - protein coding gene spindle and kinetochore associated complex subunit 3
Cpgi6548 14 57825778 to 57826886 1108 CpG island CpG island 6548
Tssr128978 14 57826128 to 57826180 52 - TSS region transcription start site region 128978
Tssr128979 14 57826185 to 57826203 18 - TSS region transcription start site region 128979
Tssr125882 14 57826210 to 57826272 62 + TSS region transcription start site region 125882
Mrpl57 14 57826228 to 57829087 2859 + protein coding gene mitochondrial ribosomal protein L57
Tssr125883 14 57826371 to 57826417 46 + TSS region transcription start site region 125883
Gm22738 14 57831063 to 57831209 146 - snRNA gene predicted gene, 22738
Zdhhc20 14 57832703 to 57890276 57573 - protein coding gene zinc finger, DHHC domain containing 20
Tssr128980 14 57847148 to 57847155 7 - TSS region transcription start site region 128980
Tssr128981 14 57849090 to 57849094 4 - TSS region transcription start site region 128981
Tssr125884 14 57878415 to 57878422 7 + TSS region transcription start site region 125884
Cpgi6549 14 57889543 to 57890715 1172 CpG island CpG island 6549
Tssr125885 14 57889780 to 57889792 12 + TSS region transcription start site region 125885
Tssr125886 14 57889811 to 57889846 35 + TSS region transcription start site region 125886
Tssr125887 14 57889990 to 57889999 9 + TSS region transcription start site region 125887
Tssr128982 14 57890184 to 57890239 55 - TSS region transcription start site region 128982
Tssr128983 14 57890242 to 57890320 78 - TSS region transcription start site region 128983
Cpgi6550 14 57910608 to 57910884 276 CpG island CpG island 6550
Micu2 14 57916261 to 57999262 83001 - protein coding gene mitochondrial calcium uptake 2
Tssr128984 14 57916609 to 57916618 9 - TSS region transcription start site region 128984
Tssr128985 14 57925392 to 57925422 30 - TSS region transcription start site region 128985
Tssr128986 14 57925465 to 57925484 19 - TSS region transcription start site region 128986
D14Mit154 14 57942183 to 57942312 129 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 154
Cpgi6551 14 57998754 to 57999620 866 CpG island CpG island 6551
Tssr128987 14 57999215 to 57999226 11 - TSS region transcription start site region 128987
Tssr128988 14 57999236 to 57999273 37 - TSS region transcription start site region 128988
Tssr125888 14 57999305 to 57999338 33 + TSS region transcription start site region 125888
3110083C13Rik 14 57999323 to 58003697 4374 + bidirectional promoter lncRNA gene RIKEN cDNA 3110083C13 gene
Tssr125889 14 57999348 to 57999362 14 + TSS region transcription start site region 125889
Cpgi6552 14 58034000 to 58034248 248 CpG island CpG island 6552
Tssr125890 14 58036606 to 58036617 11 + TSS region transcription start site region 125890
Tssr125891 14 58036664 to 58036669 5 + TSS region transcription start site region 125891
Tssr125892 14 58036678 to 58036693 15 + TSS region transcription start site region 125892
Gm9012 14 58049229 to 58049823 594 - pseudogene predicted gene 9012
Cpgi6553 14 58070608 to 58072669 2061 CpG island CpG island 6553
Tssr125893 14 58072215 to 58072229 14 + TSS region transcription start site region 125893
Tssr125894 14 58072280 to 58072305 25 + TSS region transcription start site region 125894
Fgf9 14 58072686 to 58112854 40168 + protein coding gene fibroblast growth factor 9
Cpgi6554 14 58073007 to 58073417 410 CpG island CpG island 6554
Cpgi6555 14 58073923 to 58074323 400 CpG island CpG island 6555
Cpgi6556 14 58074674 to 58076884 2210 CpG island CpG island 6556
Tssr125895 14 58085613 to 58085617 4 + TSS region transcription start site region 125895
Gm17109 14 58105772 to 58106129 357 - pseudogene predicted gene 17109
Tssr128989 14 58183216 to 58183222 6 - TSS region transcription start site region 128989
D14Mit1005 14 58213865 to 58214109 244 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1005
Gm18080 14 58240221 to 58240834 613 + pseudogene predicted gene, 18080
Gm33321 14 58300802 to 58303365 2563 + lincRNA gene predicted gene, 33321
D14Mit215 14 58367064 to 58367186 122 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 215
Gm33430 14 58428853 to 58445140 16287 + lncRNA gene predicted gene, 33430
Gm25614 14 58650268 to 58650400 132 - snoRNA gene predicted gene, 25614
n-TTagt2 14 58818153 to 58818226 73 - tRNA gene nuclear encoded tRNA threonine 2 (anticodon AGT)
Gm9022 14 58879031 to 58880245 1214 - pseudogene predicted gene 9022
Cpgi6557 14 58893459 to 58893664 205 CpG island CpG island 6557
Tssr125896 14 58893465 to 58893469 4 + TSS region transcription start site region 125896
Rpl13-ps3 14 58893506 to 58894129 623 + pseudogene ribosomal protein L13, pseudogene 3
Gm48447 14 58912104 to 58939867 27763 + lincRNA gene predicted gene, 48447
wrmod1 14 101622037 to 57942183 -43679854 QTL wobbler modifier 1