Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:57054069-57887936

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gja3 14 57034460 to 57058030 23570 - protein coding gene gap junction protein, alpha 3
Tssr125863 14 57056668 to 57056675 7 + TSS region transcription start site region 125863
Cpgi6537 14 57057240 to 57058551 1311 CpG island CpG island 6537
Tssr128938 14 57057567 to 57057589 22 - TSS region transcription start site region 128938
Tssr128939 14 57057668 to 57057726 58 - TSS region transcription start site region 128939
Tssr125864 14 57057874 to 57057884 10 + TSS region transcription start site region 125864
Tssr125865 14 57058215 to 57058221 6 + TSS region transcription start site region 125865
Gm10871 14 57083315 to 57101873 18558 unclassified gene predicted gene 10871
Gjb2 14 57098602 to 57104702 6100 - protein coding gene gap junction protein, beta 2
Tssr128940 14 57099159 to 57099178 19 - TSS region transcription start site region 128940
Tssr128941 14 57099331 to 57099347 16 - TSS region transcription start site region 128941
Tssr128942 14 57099551 to 57099560 9 - TSS region transcription start site region 128942
Tssr128943 14 57099672 to 57099697 25 - TSS region transcription start site region 128943
Tgq26 14 57099862 to 57099862 0 QTL triglyceride QTL 26
Tssr128944 14 57099876 to 57099901 25 - TSS region transcription start site region 128944
Tssr128945 14 57100226 to 57100254 28 - TSS region transcription start site region 128945
Tssr128946 14 57103288 to 57103307 19 - TSS region transcription start site region 128946
Cpgi6538 14 57103434 to 57105124 1690 CpG island CpG island 6538
Tssr128947 14 57104693 to 57104709 16 - TSS region transcription start site region 128947
Gm32912 14 57104865 to 57112901 8036 + lncRNA gene predicted gene, 32912
D14Mit83 14 57105026 to 57105230 204 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 83
Gm4491 14 57112506 to 57115883 3377 - protein coding gene predicted gene 4491
Gjb6 14 57123303 to 57133611 10308 - protein coding gene gap junction protein, beta 6
Tssr128948 14 57130908 to 57130919 11 - TSS region transcription start site region 128948
Tssr128949 14 57132029 to 57132045 16 - TSS region transcription start site region 128949
Tssr128950 14 57132051 to 57132065 14 - TSS region transcription start site region 128950
Tssr128951 14 57132071 to 57132089 18 - TSS region transcription start site region 128951
Tssr128952 14 57132534 to 57132551 17 - TSS region transcription start site region 128952
Cpgi6539 14 57132860 to 57133770 910 CpG island CpG island 6539
Tssr128953 14 57133250 to 57133266 16 - TSS region transcription start site region 128953
Tssr128954 14 57133268 to 57133314 46 - TSS region transcription start site region 128954
Tssr128955 14 57133373 to 57133389 16 - TSS region transcription start site region 128955
Tssr128956 14 57133408 to 57133420 12 - TSS region transcription start site region 128956
Tssr128957 14 57133563 to 57133575 12 - TSS region transcription start site region 128957
Tssr128958 14 57133585 to 57133618 33 - TSS region transcription start site region 128958
Gm48725 14 57178978 to 57179160 182 - pseudogene predicted gene, 48725
D14Mit122 14 57186246 to 57186386 140 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 122
Tssr125866 14 57217208 to 57217218 10 + TSS region transcription start site region 125866
Gm8996 14 57217233 to 57217642 409 + pseudogene predicted gene 8996
Tssr125867 14 57250113 to 57250122 9 + TSS region transcription start site region 125867
Tssr128959 14 57252027 to 57252039 12 - TSS region transcription start site region 128959
D14Dcr5 14 57257666 to 57257761 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 5
Cryl1 14 57275034 to 57398483 123449 - protein coding gene crystallin, lambda 1
Tssr128960 14 57306220 to 57306225 5 - TSS region transcription start site region 128960
Tssr128961 14 57328380 to 57328381 1 - TSS region transcription start site region 128961
Gm23593 14 57333366 to 57333485 119 - snoRNA gene predicted gene, 23593
Gm8971 14 57363385 to 57363733 348 + pseudogene predicted gene 8971
Tssr128962 14 57376088 to 57376093 5 - TSS region transcription start site region 128962
Gm41161 14 57376456 to 57384049 7593 + lncRNA gene predicted gene, 41161
Tssr128963 14 57379367 to 57379419 52 - TSS region transcription start site region 128963
Gm29717 14 57384865 to 57385250 385 - pseudogene predicted gene, 29717
Cpgi6540 14 57398082 to 57398714 632 CpG island CpG island 6540
Tssr128964 14 57398486 to 57398509 23 - TSS region transcription start site region 128964
Tssr128965 14 57398513 to 57398530 17 - TSS region transcription start site region 128965
AU040096 14 57417270 to 57419481 2211 unclassified gene expressed sequence AU040096
Cpgi6541 14 57423743 to 57424469 726 CpG island CpG island 6541
Tssr125868 14 57424054 to 57424093 39 + TSS region transcription start site region 125868
Ift88 14 57424069 to 57517936 93867 + protein coding gene intraflagellar transport 88
Tssr125869 14 57424094 to 57424111 17 + TSS region transcription start site region 125869
Gm15836 14 57435721 to 57436513 792 - pseudogene predicted gene 15836
Ift88os 14 57506744 to 57510835 4091 - antisense lncRNA gene intraflagellar transport 88, opposite strand
AU020094 14 57523805 to 57524834 1029 unclassified gene expressed sequence AU020094
Cpgi6542 14 57524532 to 57526053 1521 CpG island CpG island 6542
Tssr125870 14 57524734 to 57524804 70 + TSS region transcription start site region 125870
Il17d 14 57524829 to 57543166 18337 + protein coding gene interleukin 17D
Tssr125871 14 57525052 to 57525105 53 + TSS region transcription start site region 125871
Tssr128966 14 57525456 to 57525467 11 - TSS region transcription start site region 128966
Tssr128967 14 57525499 to 57525525 26 - TSS region transcription start site region 128967
Tssr128968 14 57525569 to 57525645 76 - TSS region transcription start site region 128968
Tssr125872 14 57537487 to 57537494 7 + TSS region transcription start site region 125872
Cpgi6543 14 57542184 to 57542765 581 CpG island CpG island 6543
Eef1akmt1 14 57549596 to 57571569 21973 - protein coding gene EEF1A alpha lysine methyltransferase 1
Cpgi6544 14 57571365 to 57571768 403 CpG island CpG island 6544
Tssr128969 14 57571551 to 57571588 37 - TSS region transcription start site region 128969
Tssr125873 14 57571594 to 57571625 31 + TSS region transcription start site region 125873
1700039M10Rik 14 57571614 to 57572368 754 + bidirectional promoter lncRNA gene RIKEN cDNA 1700039M10 gene
Xpo4 14 57579755 to 57665512 85757 - protein coding gene exportin 4
Tssr128970 14 57598616 to 57598617 1 - TSS region transcription start site region 128970
Gm49361 14 57642077 to 57746103 104026 - protein coding gene predicted gene, 49361
Tssr128971 14 57662216 to 57662224 8 - TSS region transcription start site region 128971
Cpgi6545 14 57664298 to 57665686 1388 CpG island CpG island 6545
Tssr128972 14 57664926 to 57664934 8 - TSS region transcription start site region 128972
Tssr128973 14 57664954 to 57664995 41 - TSS region transcription start site region 128973
Tssr128974 14 57665192 to 57665260 68 - TSS region transcription start site region 128974
Lats2 14 57689662 to 57746123 56461 - protein coding gene large tumor suppressor 2
Gm26440 14 57697809 to 57697937 128 + snoRNA gene predicted gene, 26440
Gm20430 14 57698013 to 57698219 206 + pseudogene predicted gene 20430
Tssr125874 14 57702777 to 57702778 1 + TSS region transcription start site region 125874
Tssr128975 14 57718975 to 57718978 3 - TSS region transcription start site region 128975
Tssr128976 14 57744650 to 57744655 5 - TSS region transcription start site region 128976
Tssr125875 14 57744780 to 57744803 23 + TSS region transcription start site region 125875
Cpgi6546 14 57745269 to 57746569 1300 CpG island CpG island 6546
Tssr128977 14 57746044 to 57746144 100 - TSS region transcription start site region 128977
Tssr125876 14 57746148 to 57746195 47 + TSS region transcription start site region 125876
D14Mit261 14 57753925 to 57754016 91 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 261
Cpgi6547 14 57797946 to 57799041 1095 CpG island CpG island 6547
Tssr125877 14 57798156 to 57798180 24 + TSS region transcription start site region 125877
Tssr125878 14 57798182 to 57798216 34 + TSS region transcription start site region 125878
Sap18 14 57798189 to 57804980 6791 + protein coding gene Sin3-associated polypeptide 18
Mir3077 14 57798424 to 57798487 63 + miRNA gene microRNA 3077
Tssr125879 14 57798620 to 57798629 9 + TSS region transcription start site region 125879
Tssr125880 14 57798637 to 57798696 59 + TSS region transcription start site region 125880
Tssr125881 14 57798699 to 57798708 9 + TSS region transcription start site region 125881
Ska3 14 57806561 to 57826185 19624 - protein coding gene spindle and kinetochore associated complex subunit 3
Cpgi6548 14 57825778 to 57826886 1108 CpG island CpG island 6548
Tssr128978 14 57826128 to 57826180 52 - TSS region transcription start site region 128978
Tssr128979 14 57826185 to 57826203 18 - TSS region transcription start site region 128979
Tssr125882 14 57826210 to 57826272 62 + TSS region transcription start site region 125882
Mrpl57 14 57826228 to 57829087 2859 + protein coding gene mitochondrial ribosomal protein L57
Tssr125883 14 57826371 to 57826417 46 + TSS region transcription start site region 125883
Gm22738 14 57831063 to 57831209 146 - snRNA gene predicted gene, 22738
Zdhhc20 14 57832703 to 57890276 57573 - protein coding gene zinc finger, DHHC domain containing 20
Tssr128980 14 57847148 to 57847155 7 - TSS region transcription start site region 128980
Tssr128981 14 57849090 to 57849094 4 - TSS region transcription start site region 128981
Tssr125884 14 57878415 to 57878422 7 + TSS region transcription start site region 125884