Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:56618315-57566873

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parp4 14 56575619 to 56659794 84175 + protein coding gene poly (ADP-ribose) polymerase family, member 4
Gm16573 14 56607261 to 56620513 13252 - antisense lncRNA gene predicted gene 16573
Tssr128932 14 56620504 to 56620527 23 - TSS region transcription start site region 128932
Tssr128933 14 56620559 to 56620564 5 - TSS region transcription start site region 128933
Tssr125841 14 56620913 to 56620918 5 + TSS region transcription start site region 125841
Tssr125842 14 56647495 to 56647537 42 + TSS region transcription start site region 125842
Tssr125843 14 56647592 to 56647605 13 + TSS region transcription start site region 125843
Tssr125844 14 56647687 to 56647707 20 + TSS region transcription start site region 125844
Tssr125845 14 56647799 to 56647803 4 + TSS region transcription start site region 125845
Tssr125846 14 56648077 to 56648102 25 + TSS region transcription start site region 125846
Gm4032 14 56665601 to 56667817 2216 - pseudogene predicted gene 4032
Cpgi6529 14 56667848 to 56668891 1043 CpG island CpG island 6529
Tssr128934 14 56668021 to 56668039 18 - TSS region transcription start site region 128934
Tssr125847 14 56668242 to 56668349 107 + TSS region transcription start site region 125847
Mphosph8 14 56668248 to 56697430 29182 + protein coding gene M-phase phosphoprotein 8
Tssr125848 14 56672401 to 56672413 12 + TSS region transcription start site region 125848
Tssr125849 14 56672459 to 56672473 14 + TSS region transcription start site region 125849
Tssr125850 14 56673915 to 56673928 13 + TSS region transcription start site region 125850
Tssr125851 14 56674623 to 56674626 3 + TSS region transcription start site region 125851
Tssr128935 14 56694085 to 56694117 32 - TSS region transcription start site region 128935
Gm16973 14 56696275 to 56701000 4725 - lincRNA gene predicted gene, 16973
Pspc1 14 56722441 to 56778316 55875 - protein coding gene paraspeckle protein 1
Cpgi6530 14 56777315 to 56778645 1330 CpG island CpG island 6530
Gm10034 14 56777490 to 56780426 2936 unclassified gene predicted gene 10034
Tssr125852 14 56777641 to 56777701 60 + TSS region transcription start site region 125852
Tssr128936 14 56778301 to 56778352 51 - TSS region transcription start site region 128936
Gm4479 14 56787517 to 56787687 170 - pseudogene predicted gene 4479
Zmym5 14 56790585 to 56811716 21131 - protein coding gene zinc finger, MYM-type 5
Gm4037 14 56792038 to 56792757 719 + pseudogene predicted gene 4037
Cpgi6531 14 56810966 to 56811368 402 CpG island CpG island 6531
Tssr128937 14 56811050 to 56811054 4 - TSS region transcription start site region 128937
Cpgi6532 14 56811704 to 56812862 1158 CpG island CpG island 6532
Tssr125853 14 56811975 to 56812002 27 + TSS region transcription start site region 125853
2410022M11Rik 14 56811989 to 56813899 1910 + bidirectional promoter lncRNA gene RIKEN cDNA 2410022M11 gene
Gm48906 14 56836292 to 56837036 744 - pseudogene predicted gene, 48906
Gm22498 14 56837071 to 56837156 85 - snoRNA gene predicted gene, 22498
Tssr125854 14 56850674 to 56850676 2 + TSS region transcription start site region 125854
Gm27635 14 56852758 to 56852816 58 - snRNA gene predicted gene, 27635
Gm22218 14 56852830 to 56852888 58 - snRNA gene predicted gene, 22218
Tssr125855 14 56864873 to 56864912 39 + TSS region transcription start site region 125855
Cpgi6533 14 56864962 to 56865335 373 CpG island CpG island 6533
Gm8983 14 56865413 to 56866355 942 + pseudogene predicted gene 8983
Cpgi6534 14 56885428 to 56886579 1151 CpG island CpG island 6534
Tssr125856 14 56886572 to 56886602 30 + TSS region transcription start site region 125856
Zmym2 14 56886653 to 56962701 76048 + protein coding gene zinc finger, MYM-type 2
Cpgi6535 14 56886922 to 56887630 708 CpG island CpG island 6535
Tssr125857 14 56903914 to 56903939 25 + TSS region transcription start site region 125857
Tssr125858 14 56908549 to 56908554 5 + TSS region transcription start site region 125858
Tssr125859 14 56919749 to 56919753 4 + TSS region transcription start site region 125859
Tssr125860 14 56924914 to 56924918 4 + TSS region transcription start site region 125860
Tssr125861 14 56929158 to 56929173 15 + TSS region transcription start site region 125861
Tssr125862 14 56938558 to 56938563 5 + TSS region transcription start site region 125862
D14Mit153 14 56955169 to 56955317 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 153
D14Sfk5 14 56977029 to 56977139 110 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 5
Gm36789 14 57001163 to 57004964 3801 + protein coding gene predicted gene, 36789
B020004C17Rik 14 57015134 to 57018982 3848 + lincRNA gene RIKEN cDNA B020004C17 gene
Gja3 14 57034460 to 57058030 23570 - protein coding gene gap junction protein, alpha 3
Cpgi6536 14 57036268 to 57036980 712 CpG island CpG island 6536
D14Dcr4 14 57048624 to 57048716 92 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 4
Tssr125863 14 57056668 to 57056675 7 + TSS region transcription start site region 125863
Cpgi6537 14 57057240 to 57058551 1311 CpG island CpG island 6537
Tssr128938 14 57057567 to 57057589 22 - TSS region transcription start site region 128938
Tssr128939 14 57057668 to 57057726 58 - TSS region transcription start site region 128939
Tssr125864 14 57057874 to 57057884 10 + TSS region transcription start site region 125864
Tssr125865 14 57058215 to 57058221 6 + TSS region transcription start site region 125865
Gm10871 14 57083315 to 57101873 18558 unclassified gene predicted gene 10871
Gjb2 14 57098602 to 57104702 6100 - protein coding gene gap junction protein, beta 2
Tssr128940 14 57099159 to 57099178 19 - TSS region transcription start site region 128940
Tssr128941 14 57099331 to 57099347 16 - TSS region transcription start site region 128941
Tssr128942 14 57099551 to 57099560 9 - TSS region transcription start site region 128942
Tssr128943 14 57099672 to 57099697 25 - TSS region transcription start site region 128943
Tgq26 14 57099862 to 57099862 0 QTL triglyceride QTL 26
Tssr128944 14 57099876 to 57099901 25 - TSS region transcription start site region 128944
Tssr128945 14 57100226 to 57100254 28 - TSS region transcription start site region 128945
Tssr128946 14 57103288 to 57103307 19 - TSS region transcription start site region 128946
Cpgi6538 14 57103434 to 57105124 1690 CpG island CpG island 6538
Tssr128947 14 57104693 to 57104709 16 - TSS region transcription start site region 128947
Gm32912 14 57104865 to 57112901 8036 + lncRNA gene predicted gene, 32912
D14Mit83 14 57105026 to 57105230 204 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 83
Gm4491 14 57112506 to 57115883 3377 - protein coding gene predicted gene 4491
Gjb6 14 57123303 to 57133611 10308 - protein coding gene gap junction protein, beta 6
Tssr128948 14 57130908 to 57130919 11 - TSS region transcription start site region 128948
Tssr128949 14 57132029 to 57132045 16 - TSS region transcription start site region 128949
Tssr128950 14 57132051 to 57132065 14 - TSS region transcription start site region 128950
Tssr128951 14 57132071 to 57132089 18 - TSS region transcription start site region 128951
Tssr128952 14 57132534 to 57132551 17 - TSS region transcription start site region 128952
Cpgi6539 14 57132860 to 57133770 910 CpG island CpG island 6539
Tssr128953 14 57133250 to 57133266 16 - TSS region transcription start site region 128953
Tssr128954 14 57133268 to 57133314 46 - TSS region transcription start site region 128954
Tssr128955 14 57133373 to 57133389 16 - TSS region transcription start site region 128955
Tssr128956 14 57133408 to 57133420 12 - TSS region transcription start site region 128956
Tssr128957 14 57133563 to 57133575 12 - TSS region transcription start site region 128957
Tssr128958 14 57133585 to 57133618 33 - TSS region transcription start site region 128958
Gm48725 14 57178978 to 57179160 182 - pseudogene predicted gene, 48725
D14Mit122 14 57186246 to 57186386 140 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 122
Tssr125866 14 57217208 to 57217218 10 + TSS region transcription start site region 125866
Gm8996 14 57217233 to 57217642 409 + pseudogene predicted gene 8996
Tssr125867 14 57250113 to 57250122 9 + TSS region transcription start site region 125867
Tssr128959 14 57252027 to 57252039 12 - TSS region transcription start site region 128959
D14Dcr5 14 57257666 to 57257761 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 5
Cryl1 14 57275034 to 57398483 123449 - protein coding gene crystallin, lambda 1
Tssr128960 14 57306220 to 57306225 5 - TSS region transcription start site region 128960
Tssr128961 14 57328380 to 57328381 1 - TSS region transcription start site region 128961
Gm23593 14 57333366 to 57333485 119 - snoRNA gene predicted gene, 23593
Gm8971 14 57363385 to 57363733 348 + pseudogene predicted gene 8971
Tssr128962 14 57376088 to 57376093 5 - TSS region transcription start site region 128962
Gm41161 14 57376456 to 57384049 7593 + lncRNA gene predicted gene, 41161
Tssr128963 14 57379367 to 57379419 52 - TSS region transcription start site region 128963
Gm29717 14 57384865 to 57385250 385 - pseudogene predicted gene, 29717
Cpgi6540 14 57398082 to 57398714 632 CpG island CpG island 6540
Tssr128964 14 57398486 to 57398509 23 - TSS region transcription start site region 128964
Tssr128965 14 57398513 to 57398530 17 - TSS region transcription start site region 128965
AU040096 14 57417270 to 57419481 2211 unclassified gene expressed sequence AU040096
Cpgi6541 14 57423743 to 57424469 726 CpG island CpG island 6541
Tssr125868 14 57424054 to 57424093 39 + TSS region transcription start site region 125868
Ift88 14 57424069 to 57517936 93867 + protein coding gene intraflagellar transport 88
Tssr125869 14 57424094 to 57424111 17 + TSS region transcription start site region 125869
Gm15836 14 57435721 to 57436513 792 - pseudogene predicted gene 15836
Ift88os 14 57506744 to 57510835 4091 - antisense lncRNA gene intraflagellar transport 88, opposite strand
AU020094 14 57523805 to 57524834 1029 unclassified gene expressed sequence AU020094
Cpgi6542 14 57524532 to 57526053 1521 CpG island CpG island 6542
Tssr125870 14 57524734 to 57524804 70 + TSS region transcription start site region 125870
Il17d 14 57524829 to 57543166 18337 + protein coding gene interleukin 17D
Tssr125871 14 57525052 to 57525105 53 + TSS region transcription start site region 125871
Tssr128966 14 57525456 to 57525467 11 - TSS region transcription start site region 128966
Tssr128967 14 57525499 to 57525525 26 - TSS region transcription start site region 128967
Tssr128968 14 57525569 to 57525645 76 - TSS region transcription start site region 128968
Tssr125872 14 57537487 to 57537494 7 + TSS region transcription start site region 125872
Cpgi6543 14 57542184 to 57542765 581 CpG island CpG island 6543
Eef1akmt1 14 57549596 to 57571569 21973 - protein coding gene EEF1A alpha lysine methyltransferase 1