Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:56272261-56955513

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48200 14 56275793 to 56276948 1155 + pseudogene predicted gene, 48200
Tssr125830 14 56284913 to 56284918 5 + TSS region transcription start site region 125830
Cpgi6525 14 56364660 to 56365449 789 CpG island CpG island 6525
Tssr125831 14 56364858 to 56364865 7 + TSS region transcription start site region 125831
Tssr125832 14 56365004 to 56365016 12 + TSS region transcription start site region 125832
Atp12a 14 56365068 to 56388550 23482 + protein coding gene ATPase, H+/K+ transporting, nongastric, alpha polypeptide
Tssr128927 14 56366821 to 56366835 14 - TSS region transcription start site region 128927
Gm10873 14 56376902 to 56391562 14660 - antisense lncRNA gene predicted gene 10873
Gm32454 14 56391651 to 56398828 7177 + lncRNA gene predicted gene, 32454
Cpgi6526 14 56402611 to 56402893 282 CpG island CpG island 6526
Rnf17 14 56402634 to 56525032 122398 + protein coding gene ring finger protein 17
Tssr125833 14 56402656 to 56402700 44 + TSS region transcription start site region 125833
Tssr125834 14 56402705 to 56402712 7 + TSS region transcription start site region 125834
Gm18947 14 56410354 to 56411481 1127 - pseudogene predicted gene, 18947
Gm24392 14 56416766 to 56416868 102 + snRNA gene predicted gene, 24392
Tssr125835 14 56449819 to 56449821 2 + TSS region transcription start site region 125835
Tssr4439 14 56450533 to 56450552 19 + TSS region transcription start site region 4439
Cenpj 14 56526761 to 56575425 48664 - protein coding gene centromere protein J
Gm22431 14 56535971 to 56536077 106 + unclassified non-coding RNA gene predicted gene, 22431
Tssr128928 14 56552039 to 56552071 32 - TSS region transcription start site region 128928
D14Dcr3 14 56559851 to 56559946 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 3
Tssr125836 14 56567729 to 56567745 16 + TSS region transcription start site region 125836
Cpgi6527 14 56571387 to 56572170 783 CpG island CpG island 6527
Tssr128929 14 56571808 to 56571820 12 - TSS region transcription start site region 128929
Tssr128930 14 56571830 to 56571860 30 - TSS region transcription start site region 128930
Tssr128931 14 56575461 to 56575482 21 - TSS region transcription start site region 128931
Cpgi6528 14 56575474 to 56575820 346 CpG island CpG island 6528
Tssr125837 14 56575509 to 56575534 25 + TSS region transcription start site region 125837
Tssr125838 14 56575537 to 56575546 9 + TSS region transcription start site region 125838
Tssr125839 14 56575603 to 56575633 30 + TSS region transcription start site region 125839
Parp4 14 56575619 to 56659794 84175 + protein coding gene poly (ADP-ribose) polymerase family, member 4
Tssr4440 14 56575636 to 56575639 3 + TSS region transcription start site region 4440
Tssr125840 14 56575640 to 56575665 25 + TSS region transcription start site region 125840
Gm16573 14 56607261 to 56620513 13252 - antisense lncRNA gene predicted gene 16573
Tssr128932 14 56620504 to 56620527 23 - TSS region transcription start site region 128932
Tssr128933 14 56620559 to 56620564 5 - TSS region transcription start site region 128933
Tssr125841 14 56620913 to 56620918 5 + TSS region transcription start site region 125841
Tssr125842 14 56647495 to 56647537 42 + TSS region transcription start site region 125842
Tssr125843 14 56647592 to 56647605 13 + TSS region transcription start site region 125843
Tssr125844 14 56647687 to 56647707 20 + TSS region transcription start site region 125844
Tssr125845 14 56647799 to 56647803 4 + TSS region transcription start site region 125845
Tssr125846 14 56648077 to 56648102 25 + TSS region transcription start site region 125846
Gm4032 14 56665601 to 56667817 2216 - pseudogene predicted gene 4032
Cpgi6529 14 56667848 to 56668891 1043 CpG island CpG island 6529
Tssr128934 14 56668021 to 56668039 18 - TSS region transcription start site region 128934
Tssr125847 14 56668242 to 56668349 107 + TSS region transcription start site region 125847
Mphosph8 14 56668248 to 56697430 29182 + protein coding gene M-phase phosphoprotein 8
Tssr125848 14 56672401 to 56672413 12 + TSS region transcription start site region 125848
Tssr125849 14 56672459 to 56672473 14 + TSS region transcription start site region 125849
Tssr125850 14 56673915 to 56673928 13 + TSS region transcription start site region 125850
Tssr125851 14 56674623 to 56674626 3 + TSS region transcription start site region 125851
Tssr128935 14 56694085 to 56694117 32 - TSS region transcription start site region 128935
Gm16973 14 56696275 to 56701000 4725 - lincRNA gene predicted gene, 16973
Pspc1 14 56722441 to 56778316 55875 - protein coding gene paraspeckle protein 1
Cpgi6530 14 56777315 to 56778645 1330 CpG island CpG island 6530
Gm10034 14 56777490 to 56780426 2936 unclassified gene predicted gene 10034
Tssr125852 14 56777641 to 56777701 60 + TSS region transcription start site region 125852
Tssr128936 14 56778301 to 56778352 51 - TSS region transcription start site region 128936
Gm4479 14 56787517 to 56787687 170 - pseudogene predicted gene 4479
Zmym5 14 56790585 to 56811716 21131 - protein coding gene zinc finger, MYM-type 5
Gm4037 14 56792038 to 56792757 719 + pseudogene predicted gene 4037
Cpgi6531 14 56810966 to 56811368 402 CpG island CpG island 6531
Tssr128937 14 56811050 to 56811054 4 - TSS region transcription start site region 128937
Cpgi6532 14 56811704 to 56812862 1158 CpG island CpG island 6532
Tssr125853 14 56811975 to 56812002 27 + TSS region transcription start site region 125853
2410022M11Rik 14 56811989 to 56813899 1910 + bidirectional promoter lncRNA gene RIKEN cDNA 2410022M11 gene
Gm48906 14 56836292 to 56837036 744 - pseudogene predicted gene, 48906
Gm22498 14 56837071 to 56837156 85 - snoRNA gene predicted gene, 22498
Tssr125854 14 56850674 to 56850676 2 + TSS region transcription start site region 125854
Gm27635 14 56852758 to 56852816 58 - snRNA gene predicted gene, 27635
Gm22218 14 56852830 to 56852888 58 - snRNA gene predicted gene, 22218
Tssr125855 14 56864873 to 56864912 39 + TSS region transcription start site region 125855
Cpgi6533 14 56864962 to 56865335 373 CpG island CpG island 6533
Gm8983 14 56865413 to 56866355 942 + pseudogene predicted gene 8983
Cpgi6534 14 56885428 to 56886579 1151 CpG island CpG island 6534
Tssr125856 14 56886572 to 56886602 30 + TSS region transcription start site region 125856
Zmym2 14 56886653 to 56962701 76048 + protein coding gene zinc finger, MYM-type 2
Cpgi6535 14 56886922 to 56887630 708 CpG island CpG island 6535
Tssr125857 14 56903914 to 56903939 25 + TSS region transcription start site region 125857
Tssr125858 14 56908549 to 56908554 5 + TSS region transcription start site region 125858
Tssr125859 14 56919749 to 56919753 4 + TSS region transcription start site region 125859
Tssr125860 14 56924914 to 56924918 4 + TSS region transcription start site region 125860
Tssr125861 14 56929158 to 56929173 15 + TSS region transcription start site region 125861
Tssr125862 14 56938558 to 56938563 5 + TSS region transcription start site region 125862
D14Mit153 14 56955169 to 56955317 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 153