Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:56269623-57079626

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48200 14 56275793 to 56276948 1155 + pseudogene predicted gene, 48200
Tssr125830 14 56284913 to 56284918 5 + TSS region transcription start site region 125830
Cpgi6525 14 56364660 to 56365449 789 CpG island CpG island 6525
Tssr125831 14 56364858 to 56364865 7 + TSS region transcription start site region 125831
Tssr125832 14 56365004 to 56365016 12 + TSS region transcription start site region 125832
Atp12a 14 56365068 to 56388550 23482 + protein coding gene ATPase, H+/K+ transporting, nongastric, alpha polypeptide
Tssr128927 14 56366821 to 56366835 14 - TSS region transcription start site region 128927
Gm10873 14 56376902 to 56391562 14660 - antisense lncRNA gene predicted gene 10873
Gm32454 14 56391651 to 56398828 7177 + lncRNA gene predicted gene, 32454
Cpgi6526 14 56402611 to 56402893 282 CpG island CpG island 6526
Rnf17 14 56402634 to 56525032 122398 + protein coding gene ring finger protein 17
Tssr125833 14 56402656 to 56402700 44 + TSS region transcription start site region 125833
Tssr125834 14 56402705 to 56402712 7 + TSS region transcription start site region 125834
Gm18947 14 56410354 to 56411481 1127 - pseudogene predicted gene, 18947
Gm24392 14 56416766 to 56416868 102 + snRNA gene predicted gene, 24392
Tssr125835 14 56449819 to 56449821 2 + TSS region transcription start site region 125835
Tssr4439 14 56450533 to 56450552 19 + TSS region transcription start site region 4439
Cenpj 14 56526761 to 56575425 48664 - protein coding gene centromere protein J
Gm22431 14 56535971 to 56536077 106 + unclassified non-coding RNA gene predicted gene, 22431
Tssr128928 14 56552039 to 56552071 32 - TSS region transcription start site region 128928
D14Dcr3 14 56559851 to 56559946 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 3
Tssr125836 14 56567729 to 56567745 16 + TSS region transcription start site region 125836
Cpgi6527 14 56571387 to 56572170 783 CpG island CpG island 6527
Tssr128929 14 56571808 to 56571820 12 - TSS region transcription start site region 128929
Tssr128930 14 56571830 to 56571860 30 - TSS region transcription start site region 128930
Tssr128931 14 56575461 to 56575482 21 - TSS region transcription start site region 128931
Cpgi6528 14 56575474 to 56575820 346 CpG island CpG island 6528
Tssr125837 14 56575509 to 56575534 25 + TSS region transcription start site region 125837
Tssr125838 14 56575537 to 56575546 9 + TSS region transcription start site region 125838
Tssr125839 14 56575603 to 56575633 30 + TSS region transcription start site region 125839
Parp4 14 56575619 to 56659794 84175 + protein coding gene poly (ADP-ribose) polymerase family, member 4
Tssr4440 14 56575636 to 56575639 3 + TSS region transcription start site region 4440
Tssr125840 14 56575640 to 56575665 25 + TSS region transcription start site region 125840
Gm16573 14 56607261 to 56620513 13252 - antisense lncRNA gene predicted gene 16573
Tssr128932 14 56620504 to 56620527 23 - TSS region transcription start site region 128932
Tssr128933 14 56620559 to 56620564 5 - TSS region transcription start site region 128933
Tssr125841 14 56620913 to 56620918 5 + TSS region transcription start site region 125841
Tssr125842 14 56647495 to 56647537 42 + TSS region transcription start site region 125842
Tssr125843 14 56647592 to 56647605 13 + TSS region transcription start site region 125843
Tssr125844 14 56647687 to 56647707 20 + TSS region transcription start site region 125844
Tssr125845 14 56647799 to 56647803 4 + TSS region transcription start site region 125845
Tssr125846 14 56648077 to 56648102 25 + TSS region transcription start site region 125846
Gm4032 14 56665601 to 56667817 2216 - pseudogene predicted gene 4032
Cpgi6529 14 56667848 to 56668891 1043 CpG island CpG island 6529
Tssr128934 14 56668021 to 56668039 18 - TSS region transcription start site region 128934
Tssr125847 14 56668242 to 56668349 107 + TSS region transcription start site region 125847
Mphosph8 14 56668248 to 56697430 29182 + protein coding gene M-phase phosphoprotein 8
Tssr125848 14 56672401 to 56672413 12 + TSS region transcription start site region 125848
Tssr125849 14 56672459 to 56672473 14 + TSS region transcription start site region 125849
Tssr125850 14 56673915 to 56673928 13 + TSS region transcription start site region 125850
Tssr125851 14 56674623 to 56674626 3 + TSS region transcription start site region 125851
Tssr128935 14 56694085 to 56694117 32 - TSS region transcription start site region 128935
Gm16973 14 56696275 to 56701000 4725 - lincRNA gene predicted gene, 16973
Pspc1 14 56722441 to 56778316 55875 - protein coding gene paraspeckle protein 1
Cpgi6530 14 56777315 to 56778645 1330 CpG island CpG island 6530
Gm10034 14 56777490 to 56780426 2936 unclassified gene predicted gene 10034
Tssr125852 14 56777641 to 56777701 60 + TSS region transcription start site region 125852
Tssr128936 14 56778301 to 56778352 51 - TSS region transcription start site region 128936
Gm4479 14 56787517 to 56787687 170 - pseudogene predicted gene 4479
Zmym5 14 56790585 to 56811716 21131 - protein coding gene zinc finger, MYM-type 5
Gm4037 14 56792038 to 56792757 719 + pseudogene predicted gene 4037
Cpgi6531 14 56810966 to 56811368 402 CpG island CpG island 6531
Tssr128937 14 56811050 to 56811054 4 - TSS region transcription start site region 128937
Cpgi6532 14 56811704 to 56812862 1158 CpG island CpG island 6532
Tssr125853 14 56811975 to 56812002 27 + TSS region transcription start site region 125853
2410022M11Rik 14 56811989 to 56813899 1910 + bidirectional promoter lncRNA gene RIKEN cDNA 2410022M11 gene
Gm48906 14 56836292 to 56837036 744 - pseudogene predicted gene, 48906
Gm22498 14 56837071 to 56837156 85 - snoRNA gene predicted gene, 22498
Tssr125854 14 56850674 to 56850676 2 + TSS region transcription start site region 125854
Gm27635 14 56852758 to 56852816 58 - snRNA gene predicted gene, 27635
Gm22218 14 56852830 to 56852888 58 - snRNA gene predicted gene, 22218
Tssr125855 14 56864873 to 56864912 39 + TSS region transcription start site region 125855
Cpgi6533 14 56864962 to 56865335 373 CpG island CpG island 6533
Gm8983 14 56865413 to 56866355 942 + pseudogene predicted gene 8983
Cpgi6534 14 56885428 to 56886579 1151 CpG island CpG island 6534
Tssr125856 14 56886572 to 56886602 30 + TSS region transcription start site region 125856
Zmym2 14 56886653 to 56962701 76048 + protein coding gene zinc finger, MYM-type 2
Cpgi6535 14 56886922 to 56887630 708 CpG island CpG island 6535
Tssr125857 14 56903914 to 56903939 25 + TSS region transcription start site region 125857
Tssr125858 14 56908549 to 56908554 5 + TSS region transcription start site region 125858
Tssr125859 14 56919749 to 56919753 4 + TSS region transcription start site region 125859
Tssr125860 14 56924914 to 56924918 4 + TSS region transcription start site region 125860
Tssr125861 14 56929158 to 56929173 15 + TSS region transcription start site region 125861
Tssr125862 14 56938558 to 56938563 5 + TSS region transcription start site region 125862
D14Mit153 14 56955169 to 56955317 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 153
D14Sfk5 14 56977029 to 56977139 110 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 5
Gm36789 14 57001163 to 57004964 3801 + protein coding gene predicted gene, 36789
B020004C17Rik 14 57015134 to 57018982 3848 + lincRNA gene RIKEN cDNA B020004C17 gene
Gja3 14 57034460 to 57058030 23570 - protein coding gene gap junction protein, alpha 3
Cpgi6536 14 57036268 to 57036980 712 CpG island CpG island 6536
D14Dcr4 14 57048624 to 57048716 92 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 4
Tssr125863 14 57056668 to 57056675 7 + TSS region transcription start site region 125863
Cpgi6537 14 57057240 to 57058551 1311 CpG island CpG island 6537
Tssr128938 14 57057567 to 57057589 22 - TSS region transcription start site region 128938
Tssr128939 14 57057668 to 57057726 58 - TSS region transcription start site region 128939
Tssr125864 14 57057874 to 57057884 10 + TSS region transcription start site region 125864
Tssr125865 14 57058215 to 57058221 6 + TSS region transcription start site region 125865