Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55927172-56597187

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48925 14 55935606 to 55937595 1989 - lincRNA gene predicted gene, 48925
Cma1 14 55941451 to 55944675 3224 - protein coding gene chymase 1, mast cell
Tssr128909 14 55944536 to 55944569 33 - TSS region transcription start site region 128909
Mcpt-ps1 14 55949809 to 55952350 2541 - pseudogene mast cell protease, pseudogene 1
Cma2 14 55950980 to 55974031 23051 + protein coding gene chymase 2, mast cell
Tssr4438 14 55951347 to 55951348 1 - TSS region transcription start site region 4438
Gm48927 14 55966725 to 55966865 140 - pseudogene predicted gene, 48927
Gm48934 14 55989063 to 55989685 622 + pseudogene predicted gene, 48934
Gm5801 14 56010536 to 56011315 779 - pseudogene predicted pseudogene 5801
Tssr125828 14 56017965 to 56017970 5 + TSS region transcription start site region 125828
Mcpt1 14 56017971 to 56020384 2413 + protein coding gene mast cell protease 1
Mcpt9 14 56026864 to 56030495 3631 - protein coding gene mast cell protease 9
Mcpt2 14 56042041 to 56044642 2601 + protein coding gene mast cell protease 2
Mcpt4 14 56059744 to 56062310 2566 - protein coding gene mast cell protease 4
Tssr128910 14 56062307 to 56062313 6 - TSS region transcription start site region 128910
Mcpt8 14 56082166 to 56085273 3107 - protein coding gene mast cell protease 8
Mir6949 14 56082401 to 56082468 67 - miRNA gene microRNA 6949
Tssr128911 14 56085214 to 56085217 3 - TSS region transcription start site region 128911
Ctsg 14 56099885 to 56102574 2689 - protein coding gene cathepsin G
Tssr128912 14 56100713 to 56100723 10 - TSS region transcription start site region 128912
Tssr128913 14 56102458 to 56102472 14 - TSS region transcription start site region 128913
Tssr128914 14 56105133 to 56105140 7 - TSS region transcription start site region 128914
Gzme 14 56117626 to 56120625 2999 - protein coding gene granzyme E
Tssr128915 14 56120623 to 56120627 4 - TSS region transcription start site region 128915
Gzmd 14 56129556 to 56132607 3051 - protein coding gene granzyme D
Tssr128916 14 56132590 to 56132595 5 - TSS region transcription start site region 128916
Gzmg 14 56156582 to 56159579 2997 - protein coding gene granzyme G
Tssr128917 14 56159590 to 56159597 7 - TSS region transcription start site region 128917
Gm9547 14 56162131 to 56162801 670 - pseudogene predicted gene 9547
Gzmn 14 56165797 to 56174599 8802 - protein coding gene granzyme N
Gm4022 14 56173751 to 56207735 33984 + antisense lncRNA gene predicted gene 4022
Tssr128918 14 56174589 to 56174602 13 - TSS region transcription start site region 128918
Tssr128919 14 56174604 to 56174611 7 - TSS region transcription start site region 128919
Gm8961 14 56178004 to 56180711 2707 - pseudogene predicted gene 8961
Tssr128920 14 56180778 to 56180781 3 - TSS region transcription start site region 128920
Gm8963 14 56181827 to 56182504 677 + pseudogene predicted gene 8963
D14Mit64 14 56183222 to 56183317 95 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 64
Gzmf 14 56205263 to 56211407 6144 - protein coding gene granzyme F
Tssr125829 14 56206373 to 56206400 27 + TSS region transcription start site region 125829
D14Mit84.2 14 56209107 to 56209231 124 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84.2
D14Mit84 14 56209344 to 56209468 124 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84
D14Mit84.1 14 56209543 to 56209653 110 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84.1
Tssr128921 14 56211423 to 56211430 7 - TSS region transcription start site region 128921
Gzmc 14 56231441 to 56234656 3215 - protein coding gene granzyme C
Tssr128922 14 56234650 to 56234655 5 - TSS region transcription start site region 128922
Tssr128923 14 56238732 to 56238747 15 - TSS region transcription start site region 128923
Gm24118 14 56240560 to 56240685 125 + snoRNA gene predicted gene, 24118
Gm4819 14 56250069 to 56251077 1008 + pseudogene predicted gene 4819
Gzmb 14 56258856 to 56262260 3404 - protein coding gene granzyme B
Tssr128924 14 56262172 to 56262187 15 - TSS region transcription start site region 128924
Tssr128925 14 56262217 to 56262228 11 - TSS region transcription start site region 128925
Tssr128926 14 56262233 to 56262248 15 - TSS region transcription start site region 128926
Gm48200 14 56275793 to 56276948 1155 + pseudogene predicted gene, 48200
Tssr125830 14 56284913 to 56284918 5 + TSS region transcription start site region 125830
Cpgi6525 14 56364660 to 56365449 789 CpG island CpG island 6525
Tssr125831 14 56364858 to 56364865 7 + TSS region transcription start site region 125831
Tssr125832 14 56365004 to 56365016 12 + TSS region transcription start site region 125832
Atp12a 14 56365068 to 56388550 23482 + protein coding gene ATPase, H+/K+ transporting, nongastric, alpha polypeptide
Tssr128927 14 56366821 to 56366835 14 - TSS region transcription start site region 128927
Gm10873 14 56376902 to 56391562 14660 - antisense lncRNA gene predicted gene 10873
Gm32454 14 56391651 to 56398828 7177 + lncRNA gene predicted gene, 32454
Cpgi6526 14 56402611 to 56402893 282 CpG island CpG island 6526
Rnf17 14 56402634 to 56525032 122398 + protein coding gene ring finger protein 17
Tssr125833 14 56402656 to 56402700 44 + TSS region transcription start site region 125833
Tssr125834 14 56402705 to 56402712 7 + TSS region transcription start site region 125834
Gm18947 14 56410354 to 56411481 1127 - pseudogene predicted gene, 18947
Gm24392 14 56416766 to 56416868 102 + snRNA gene predicted gene, 24392
Tssr125835 14 56449819 to 56449821 2 + TSS region transcription start site region 125835
Tssr4439 14 56450533 to 56450552 19 + TSS region transcription start site region 4439
Cenpj 14 56526761 to 56575425 48664 - protein coding gene centromere protein J
Gm22431 14 56535971 to 56536077 106 + unclassified non-coding RNA gene predicted gene, 22431
Tssr128928 14 56552039 to 56552071 32 - TSS region transcription start site region 128928
D14Dcr3 14 56559851 to 56559946 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 3
Tssr125836 14 56567729 to 56567745 16 + TSS region transcription start site region 125836
Cpgi6527 14 56571387 to 56572170 783 CpG island CpG island 6527
Tssr128929 14 56571808 to 56571820 12 - TSS region transcription start site region 128929
Tssr128930 14 56571830 to 56571860 30 - TSS region transcription start site region 128930
Tssr128931 14 56575461 to 56575482 21 - TSS region transcription start site region 128931
Cpgi6528 14 56575474 to 56575820 346 CpG island CpG island 6528
Tssr125837 14 56575509 to 56575534 25 + TSS region transcription start site region 125837
Tssr125838 14 56575537 to 56575546 9 + TSS region transcription start site region 125838
Tssr125839 14 56575603 to 56575633 30 + TSS region transcription start site region 125839
Parp4 14 56575619 to 56659794 84175 + protein coding gene poly (ADP-ribose) polymerase family, member 4
Tssr4440 14 56575636 to 56575639 3 + TSS region transcription start site region 4440
Tssr125840 14 56575640 to 56575665 25 + TSS region transcription start site region 125840