Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55821821-56911835

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41159 14 55820012 to 55823432 3420 - lncRNA gene predicted gene, 41159
Cpgi6517 14 55823069 to 55823662 593 CpG island CpG island 6517
Nfatc4 14 55824795 to 55833943 9148 + protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4
Tssr125820 14 55824861 to 55824889 28 + TSS region transcription start site region 125820
Tssr125821 14 55824905 to 55824919 14 + TSS region transcription start site region 125821
Tssr125822 14 55824944 to 55824963 19 + TSS region transcription start site region 125822
Tssr125823 14 55824969 to 55825011 42 + TSS region transcription start site region 125823
Cpgi6518 14 55825245 to 55825811 566 CpG island CpG island 6518
Cpgi6519 14 55826381 to 55826981 600 CpG island CpG island 6519
Cpgi6520 14 55853906 to 55854453 547 CpG island CpG island 6520
Tssr125824 14 55853978 to 55853989 11 + TSS region transcription start site region 125824
Tssr125825 14 55853997 to 55854033 36 + TSS region transcription start site region 125825
Nynrin 14 55854115 to 55874736 20621 + protein coding gene NYN domain and retroviral integrase containing
Tssr125826 14 55854125 to 55854206 81 + TSS region transcription start site region 125826
Gm26751 14 55864311 to 55874735 10424 - lincRNA gene predicted gene, 26751
Tssr128892 14 55878357 to 55878359 2 - TSS region transcription start site region 128892
Cbln3 14 55878920 to 55884256 5336 - protein coding gene cerebellin 3 precursor protein
Tssr128893 14 55881978 to 55881994 16 - TSS region transcription start site region 128893
Tssr128894 14 55882050 to 55882051 1 - TSS region transcription start site region 128894
Tssr128895 14 55882067 to 55882081 14 - TSS region transcription start site region 128895
Tssr128896 14 55882193 to 55882196 3 - TSS region transcription start site region 128896
Tssr128897 14 55882669 to 55882714 45 - TSS region transcription start site region 128897
Tssr128898 14 55882748 to 55882763 15 - TSS region transcription start site region 128898
Tssr128899 14 55882774 to 55882784 10 - TSS region transcription start site region 128899
Tssr128900 14 55882870 to 55882902 32 - TSS region transcription start site region 128900
Tssr128901 14 55884197 to 55884216 19 - TSS region transcription start site region 128901
Tssr128902 14 55884223 to 55884237 14 - TSS region transcription start site region 128902
Tssr128903 14 55884250 to 55884255 5 - TSS region transcription start site region 128903
Tssr128904 14 55884279 to 55884311 32 - TSS region transcription start site region 128904
Tssr128905 14 55884367 to 55884376 9 - TSS region transcription start site region 128905
Cpgi6521 14 55884742 to 55885450 708 CpG island CpG island 6521
Khnyn 14 55884947 to 55898775 13828 + protein coding gene KH and NYN domain containing
Tssr125827 14 55884960 to 55885010 50 + TSS region transcription start site region 125827
Tssr4436 14 55885031 to 55885042 11 + TSS region transcription start site region 4436
Cpgi6522 14 55885669 to 55886070 401 CpG island CpG island 6522
Tssr128906 14 55885978 to 55885987 9 - TSS region transcription start site region 128906
Tssr128907 14 55885997 to 55886009 12 - TSS region transcription start site region 128907
Cpgi6523 14 55887282 to 55887806 524 CpG island CpG island 6523
Sdr39u1 14 55897283 to 55900281 2998 - protein coding gene short chain dehydrogenase/reductase family 39U, member 1
Cpgi6524 14 55899691 to 55900564 873 CpG island CpG island 6524
Tssr128908 14 55900188 to 55900235 47 - TSS region transcription start site region 128908
Tssr4437 14 55900240 to 55900260 20 - TSS region transcription start site region 4437
D14Sfk2 14 55909965 to 55910188 223 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 2
D14Sfk3 14 55909967 to 55910109 142 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 3
D14Sfk1 14 55910809 to 55911047 238 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 1
Gm48925 14 55935606 to 55937595 1989 - lincRNA gene predicted gene, 48925
Cma1 14 55941451 to 55944675 3224 - protein coding gene chymase 1, mast cell
Tssr128909 14 55944536 to 55944569 33 - TSS region transcription start site region 128909
Mcpt-ps1 14 55949809 to 55952350 2541 - pseudogene mast cell protease, pseudogene 1
Cma2 14 55950980 to 55974031 23051 + protein coding gene chymase 2, mast cell
Tssr4438 14 55951347 to 55951348 1 - TSS region transcription start site region 4438
Gm48927 14 55966725 to 55966865 140 - pseudogene predicted gene, 48927
Gm48934 14 55989063 to 55989685 622 + pseudogene predicted gene, 48934
Gm5801 14 56010536 to 56011315 779 - pseudogene predicted pseudogene 5801
Tssr125828 14 56017965 to 56017970 5 + TSS region transcription start site region 125828
Mcpt1 14 56017971 to 56020384 2413 + protein coding gene mast cell protease 1
Mcpt9 14 56026864 to 56030495 3631 - protein coding gene mast cell protease 9
Mcpt2 14 56042041 to 56044642 2601 + protein coding gene mast cell protease 2
Mcpt4 14 56059744 to 56062310 2566 - protein coding gene mast cell protease 4
Tssr128910 14 56062307 to 56062313 6 - TSS region transcription start site region 128910
Mcpt8 14 56082166 to 56085273 3107 - protein coding gene mast cell protease 8
Mir6949 14 56082401 to 56082468 67 - miRNA gene microRNA 6949
Tssr128911 14 56085214 to 56085217 3 - TSS region transcription start site region 128911
Ctsg 14 56099885 to 56102574 2689 - protein coding gene cathepsin G
Tssr128912 14 56100713 to 56100723 10 - TSS region transcription start site region 128912
Tssr128913 14 56102458 to 56102472 14 - TSS region transcription start site region 128913
Tssr128914 14 56105133 to 56105140 7 - TSS region transcription start site region 128914
Gzme 14 56117626 to 56120625 2999 - protein coding gene granzyme E
Tssr128915 14 56120623 to 56120627 4 - TSS region transcription start site region 128915
Gzmd 14 56129556 to 56132607 3051 - protein coding gene granzyme D
Tssr128916 14 56132590 to 56132595 5 - TSS region transcription start site region 128916
Gzmg 14 56156582 to 56159579 2997 - protein coding gene granzyme G
Tssr128917 14 56159590 to 56159597 7 - TSS region transcription start site region 128917
Gm9547 14 56162131 to 56162801 670 - pseudogene predicted gene 9547
Gzmn 14 56165797 to 56174599 8802 - protein coding gene granzyme N
Gm4022 14 56173751 to 56207735 33984 + antisense lncRNA gene predicted gene 4022
Tssr128918 14 56174589 to 56174602 13 - TSS region transcription start site region 128918
Tssr128919 14 56174604 to 56174611 7 - TSS region transcription start site region 128919
Gm8961 14 56178004 to 56180711 2707 - pseudogene predicted gene 8961
Tssr128920 14 56180778 to 56180781 3 - TSS region transcription start site region 128920
Gm8963 14 56181827 to 56182504 677 + pseudogene predicted gene 8963
D14Mit64 14 56183222 to 56183317 95 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 64
Gzmf 14 56205263 to 56211407 6144 - protein coding gene granzyme F
Tssr125829 14 56206373 to 56206400 27 + TSS region transcription start site region 125829
D14Mit84.2 14 56209107 to 56209231 124 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84.2
D14Mit84 14 56209344 to 56209468 124 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84
D14Mit84.1 14 56209543 to 56209653 110 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 84.1
Tssr128921 14 56211423 to 56211430 7 - TSS region transcription start site region 128921
Gzmc 14 56231441 to 56234656 3215 - protein coding gene granzyme C
Tssr128922 14 56234650 to 56234655 5 - TSS region transcription start site region 128922
Tssr128923 14 56238732 to 56238747 15 - TSS region transcription start site region 128923
Gm24118 14 56240560 to 56240685 125 + snoRNA gene predicted gene, 24118
Gm4819 14 56250069 to 56251077 1008 + pseudogene predicted gene 4819
Gzmb 14 56258856 to 56262260 3404 - protein coding gene granzyme B
Tssr128924 14 56262172 to 56262187 15 - TSS region transcription start site region 128924
Tssr128925 14 56262217 to 56262228 11 - TSS region transcription start site region 128925
Tssr128926 14 56262233 to 56262248 15 - TSS region transcription start site region 128926
Gm48200 14 56275793 to 56276948 1155 + pseudogene predicted gene, 48200
Tssr125830 14 56284913 to 56284918 5 + TSS region transcription start site region 125830
Cpgi6525 14 56364660 to 56365449 789 CpG island CpG island 6525
Tssr125831 14 56364858 to 56364865 7 + TSS region transcription start site region 125831
Tssr125832 14 56365004 to 56365016 12 + TSS region transcription start site region 125832
Atp12a 14 56365068 to 56388550 23482 + protein coding gene ATPase, H+/K+ transporting, nongastric, alpha polypeptide
Tssr128927 14 56366821 to 56366835 14 - TSS region transcription start site region 128927
Gm10873 14 56376902 to 56391562 14660 - antisense lncRNA gene predicted gene 10873
Gm32454 14 56391651 to 56398828 7177 + lncRNA gene predicted gene, 32454
Cpgi6526 14 56402611 to 56402893 282 CpG island CpG island 6526
Rnf17 14 56402634 to 56525032 122398 + protein coding gene ring finger protein 17
Tssr125833 14 56402656 to 56402700 44 + TSS region transcription start site region 125833
Tssr125834 14 56402705 to 56402712 7 + TSS region transcription start site region 125834
Gm18947 14 56410354 to 56411481 1127 - pseudogene predicted gene, 18947
Gm24392 14 56416766 to 56416868 102 + snRNA gene predicted gene, 24392
Tssr125835 14 56449819 to 56449821 2 + TSS region transcription start site region 125835
Tssr4439 14 56450533 to 56450552 19 + TSS region transcription start site region 4439
Cenpj 14 56526761 to 56575425 48664 - protein coding gene centromere protein J
Gm22431 14 56535971 to 56536077 106 + unclassified non-coding RNA gene predicted gene, 22431
Tssr128928 14 56552039 to 56552071 32 - TSS region transcription start site region 128928
D14Dcr3 14 56559851 to 56559946 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 3
Tssr125836 14 56567729 to 56567745 16 + TSS region transcription start site region 125836
Cpgi6527 14 56571387 to 56572170 783 CpG island CpG island 6527
Tssr128929 14 56571808 to 56571820 12 - TSS region transcription start site region 128929
Tssr128930 14 56571830 to 56571860 30 - TSS region transcription start site region 128930
Tssr128931 14 56575461 to 56575482 21 - TSS region transcription start site region 128931
Cpgi6528 14 56575474 to 56575820 346 CpG island CpG island 6528
Tssr125837 14 56575509 to 56575534 25 + TSS region transcription start site region 125837
Tssr125838 14 56575537 to 56575546 9 + TSS region transcription start site region 125838
Tssr125839 14 56575603 to 56575633 30 + TSS region transcription start site region 125839
Parp4 14 56575619 to 56659794 84175 + protein coding gene poly (ADP-ribose) polymerase family, member 4
Tssr4440 14 56575636 to 56575639 3 + TSS region transcription start site region 4440
Tssr125840 14 56575640 to 56575665 25 + TSS region transcription start site region 125840
Gm16573 14 56607261 to 56620513 13252 - antisense lncRNA gene predicted gene 16573
Tssr128932 14 56620504 to 56620527 23 - TSS region transcription start site region 128932
Tssr128933 14 56620559 to 56620564 5 - TSS region transcription start site region 128933
Tssr125841 14 56620913 to 56620918 5 + TSS region transcription start site region 125841
Tssr125842 14 56647495 to 56647537 42 + TSS region transcription start site region 125842
Tssr125843 14 56647592 to 56647605 13 + TSS region transcription start site region 125843
Tssr125844 14 56647687 to 56647707 20 + TSS region transcription start site region 125844
Tssr125845 14 56647799 to 56647803 4 + TSS region transcription start site region 125845
Tssr125846 14 56648077 to 56648102 25 + TSS region transcription start site region 125846
Gm4032 14 56665601 to 56667817 2216 - pseudogene predicted gene 4032
Cpgi6529 14 56667848 to 56668891 1043 CpG island CpG island 6529
Tssr128934 14 56668021 to 56668039 18 - TSS region transcription start site region 128934
Tssr125847 14 56668242 to 56668349 107 + TSS region transcription start site region 125847
Mphosph8 14 56668248 to 56697430 29182 + protein coding gene M-phase phosphoprotein 8
Tssr125848 14 56672401 to 56672413 12 + TSS region transcription start site region 125848
Tssr125849 14 56672459 to 56672473 14 + TSS region transcription start site region 125849
Tssr125850 14 56673915 to 56673928 13 + TSS region transcription start site region 125850
Tssr125851 14 56674623 to 56674626 3 + TSS region transcription start site region 125851
Tssr128935 14 56694085 to 56694117 32 - TSS region transcription start site region 128935
Gm16973 14 56696275 to 56701000 4725 - lincRNA gene predicted gene, 16973
Pspc1 14 56722441 to 56778316 55875 - protein coding gene paraspeckle protein 1
Cpgi6530 14 56777315 to 56778645 1330 CpG island CpG island 6530
Gm10034 14 56777490 to 56780426 2936 unclassified gene predicted gene 10034
Tssr125852 14 56777641 to 56777701 60 + TSS region transcription start site region 125852
Tssr128936 14 56778301 to 56778352 51 - TSS region transcription start site region 128936
Gm4479 14 56787517 to 56787687 170 - pseudogene predicted gene 4479
Zmym5 14 56790585 to 56811716 21131 - protein coding gene zinc finger, MYM-type 5
Gm4037 14 56792038 to 56792757 719 + pseudogene predicted gene 4037
Cpgi6531 14 56810966 to 56811368 402 CpG island CpG island 6531
Tssr128937 14 56811050 to 56811054 4 - TSS region transcription start site region 128937
Cpgi6532 14 56811704 to 56812862 1158 CpG island CpG island 6532
Tssr125853 14 56811975 to 56812002 27 + TSS region transcription start site region 125853
2410022M11Rik 14 56811989 to 56813899 1910 + bidirectional promoter lncRNA gene RIKEN cDNA 2410022M11 gene
Gm48906 14 56836292 to 56837036 744 - pseudogene predicted gene, 48906
Gm22498 14 56837071 to 56837156 85 - snoRNA gene predicted gene, 22498
Tssr125854 14 56850674 to 56850676 2 + TSS region transcription start site region 125854
Gm27635 14 56852758 to 56852816 58 - snRNA gene predicted gene, 27635
Gm22218 14 56852830 to 56852888 58 - snRNA gene predicted gene, 22218
Tssr125855 14 56864873 to 56864912 39 + TSS region transcription start site region 125855
Cpgi6533 14 56864962 to 56865335 373 CpG island CpG island 6533
Gm8983 14 56865413 to 56866355 942 + pseudogene predicted gene 8983
Cpgi6534 14 56885428 to 56886579 1151 CpG island CpG island 6534
Tssr125856 14 56886572 to 56886602 30 + TSS region transcription start site region 125856
Zmym2 14 56886653 to 56962701 76048 + protein coding gene zinc finger, MYM-type 2
Cpgi6535 14 56886922 to 56887630 708 CpG island CpG island 6535
Tssr125857 14 56903914 to 56903939 25 + TSS region transcription start site region 125857
Tssr125858 14 56908549 to 56908554 5 + TSS region transcription start site region 125858