Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55609020-55875684

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Irf9 14 55603985 to 55610030 6045 + protein coding gene interferon regulatory factor 9
Tssr125792 14 55617997 to 55618011 14 + TSS region transcription start site region 125792
Tssr125793 14 55618023 to 55618037 14 + TSS region transcription start site region 125793
Rec8 14 55618037 to 55625395 7358 + protein coding gene REC8 meiotic recombination protein
Tssr125794 14 55618126 to 55618137 11 + TSS region transcription start site region 125794
Tssr125795 14 55618138 to 55618183 45 + TSS region transcription start site region 125795
Tssr125796 14 55619038 to 55619063 25 + TSS region transcription start site region 125796
Ipo4 14 55625629 to 55635952 10323 - protein coding gene importin 4
Tssr128845 14 55628357 to 55628373 16 - TSS region transcription start site region 128845
Gm49378 14 55629076 to 55637895 8819 - protein coding gene predicted gene, 49378
Cpgi6502 14 55635141 to 55635907 766 CpG island CpG island 6502
Tssr128846 14 55635602 to 55635718 116 - TSS region transcription start site region 128846
Tm9sf1 14 55635965 to 55643806 7841 - protein coding gene transmembrane 9 superfamily member 1
Cpgi6503 14 55642829 to 55643989 1160 CpG island CpG island 6503
Tssr128847 14 55643306 to 55643382 76 - TSS region transcription start site region 128847
Tssr128848 14 55643543 to 55643600 57 - TSS region transcription start site region 128848
Gm49747 14 55643604 to 55646352 2748 + antisense lncRNA gene predicted gene, 49747
Tssr125797 14 55643628 to 55643666 38 + TSS region transcription start site region 125797
Tssr128849 14 55643720 to 55643764 44 - TSS region transcription start site region 128849
Tssr128850 14 55643800 to 55643822 22 - TSS region transcription start site region 128850
Tssr125798 14 55650162 to 55650167 5 + TSS region transcription start site region 125798
Tssr125799 14 55650170 to 55650197 27 + TSS region transcription start site region 125799
Tssk4 14 55650184 to 55652539 2355 + protein coding gene testis-specific serine kinase 4
Tssr125800 14 55650201 to 55650226 25 + TSS region transcription start site region 125800
Tssr125801 14 55650228 to 55650235 7 + TSS region transcription start site region 125801
Gm49299 14 55654845 to 55658208 3363 - pseudogene predicted gene, 49299
Mdp1 14 55657879 to 55660508 2629 - protein coding gene magnesium-dependent phosphatase 1
Cpgi6504 14 55659970 to 55660667 697 CpG island CpG island 6504
Tssr128851 14 55660239 to 55660259 20 - TSS region transcription start site region 128851
Tssr128852 14 55660273 to 55660314 41 - TSS region transcription start site region 128852
Tssr128853 14 55660397 to 55660466 69 - TSS region transcription start site region 128853
Nedd8 14 55662267 to 55671906 9639 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 8
Tssr128854 14 55663451 to 55663461 10 - TSS region transcription start site region 128854
Tssr125802 14 55671151 to 55671152 1 + TSS region transcription start site region 125802
Cpgi6505 14 55671636 to 55672426 790 CpG island CpG island 6505
Tssr128855 14 55671858 to 55671869 11 - TSS region transcription start site region 128855
Tssr128856 14 55671873 to 55671918 45 - TSS region transcription start site region 128856
Gmpr2 14 55671941 to 55679200 7259 + protein coding gene guanosine monophosphate reductase 2
Tssr128857 14 55672064 to 55672125 61 - TSS region transcription start site region 128857
Tssr128858 14 55672136 to 55672147 11 - TSS region transcription start site region 128858
Tssr128859 14 55672169 to 55672179 10 - TSS region transcription start site region 128859
Tssr128860 14 55672193 to 55672208 15 - TSS region transcription start site region 128860
Tssr125803 14 55672250 to 55672298 48 + TSS region transcription start site region 125803
Tssr125804 14 55672308 to 55672315 7 + TSS region transcription start site region 125804
Tssr125805 14 55672371 to 55672391 20 + TSS region transcription start site region 125805
Tinf2 14 55676208 to 55682624 6416 - protein coding gene Terf1 (TRF1)-interacting nuclear factor 2
Cpgi6506 14 55681163 to 55682108 945 CpG island CpG island 6506
Tssr128861 14 55681460 to 55681558 98 - TSS region transcription start site region 128861
Tssr128862 14 55681741 to 55681756 15 - TSS region transcription start site region 128862
Tssr128863 14 55681776 to 55681818 42 - TSS region transcription start site region 128863
Gm49067 14 55681918 to 55712282 30364 + antisense lncRNA gene predicted gene, 49067
Gm25887 14 55683834 to 55683917 83 - snRNA gene predicted gene, 25887
Tgm1 14 55700009 to 55713921 13912 - protein coding gene transglutaminase 1, K polypeptide
Tssr128864 14 55709475 to 55709486 11 - TSS region transcription start site region 128864
Cpgi6507 14 55712473 to 55712734 261 CpG island CpG island 6507
Tssr128865 14 55713106 to 55713110 4 - TSS region transcription start site region 128865
Cpgi6508 14 55713197 to 55713556 359 CpG island CpG island 6508
Tssr128866 14 55713482 to 55713503 21 - TSS region transcription start site region 128866
Rabggta 14 55715877 to 55722368 6491 - protein coding gene Rab geranylgeranyl transferase, a subunit
Tssr128867 14 55721261 to 55721275 14 - TSS region transcription start site region 128867
Cpgi6509 14 55721634 to 55722418 784 CpG island CpG island 6509
Tssr128868 14 55721860 to 55721894 34 - TSS region transcription start site region 128868
Tssr128869 14 55721896 to 55721930 34 - TSS region transcription start site region 128869
Tssr128870 14 55722192 to 55722211 19 - TSS region transcription start site region 128870
Tssr128871 14 55722223 to 55722264 41 - TSS region transcription start site region 128871
Tssr128872 14 55727774 to 55727783 9 - TSS region transcription start site region 128872
Dhrs1 14 55739020 to 55745684 6664 - protein coding gene dehydrogenase/reductase (SDR family) member 1
Tssr128873 14 55739602 to 55739613 11 - TSS region transcription start site region 128873
Tssr128874 14 55743846 to 55743874 28 - TSS region transcription start site region 128874
Cpgi6510 14 55745307 to 55746550 1243 CpG island CpG island 6510
Tssr128875 14 55745453 to 55745483 30 - TSS region transcription start site region 128875
Tssr128876 14 55745486 to 55745502 16 - TSS region transcription start site region 128876
Tssr128877 14 55745524 to 55745642 118 - TSS region transcription start site region 128877
Tssr128878 14 55745647 to 55745658 11 - TSS region transcription start site region 128878
Tssr125806 14 55745678 to 55745776 98 + TSS region transcription start site region 125806
Tssr128879 14 55745680 to 55745701 21 - TSS region transcription start site region 128879
Nop9 14 55745693 to 55755500 9807 + protein coding gene NOP9 nucleolar protein
Tssr125807 14 55745795 to 55745804 9 + TSS region transcription start site region 125807
Tssr125808 14 55745878 to 55745891 13 + TSS region transcription start site region 125808
Tssr125809 14 55745893 to 55745918 25 + TSS region transcription start site region 125809
Tssr125810 14 55745921 to 55745932 11 + TSS region transcription start site region 125810
Cideb 14 55754052 to 55758424 4372 - protein coding gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
Tssr128880 14 55754454 to 55754482 28 - TSS region transcription start site region 128880
Tssr125811 14 55757830 to 55757856 26 + TSS region transcription start site region 125811
Tssr125812 14 55757866 to 55757893 27 + TSS region transcription start site region 125812
Tssr4432 14 55757970 to 55757988 18 - TSS region transcription start site region 4432
Tssr128881 14 55758308 to 55758313 5 - TSS region transcription start site region 128881
Tssr128882 14 55758331 to 55758342 11 - TSS region transcription start site region 128882
Tssr128883 14 55758343 to 55758436 93 - TSS region transcription start site region 128883
Tssr4433 14 55758438 to 55758445 7 - TSS region transcription start site region 4433
Tssr4434 14 55758455 to 55758460 5 - TSS region transcription start site region 4434
Tssr128884 14 55758463 to 55758489 26 - TSS region transcription start site region 128884
Tssr125813 14 55761385 to 55761401 16 + TSS region transcription start site region 125813
Tssr125814 14 55761408 to 55761436 28 + TSS region transcription start site region 125814
Ltb4r2 14 55761428 to 55765138 3710 + protein coding gene leukotriene B4 receptor 2
Cpgi6511 14 55761814 to 55763024 1210 CpG island CpG island 6511
Tssr125815 14 55764687 to 55764728 41 + TSS region transcription start site region 125815
Tssr4435 14 55765706 to 55765709 3 - TSS region transcription start site region 4435
Tssr125816 14 55765834 to 55765867 33 + TSS region transcription start site region 125816
Tssr125817 14 55765956 to 55765999 43 + TSS region transcription start site region 125817
Ltb4r1 14 55765962 to 55768494 2532 + protein coding gene leukotriene B4 receptor 1
Cpgi6512 14 55767495 to 55768407 912 CpG island CpG island 6512
Tssr125818 14 55768826 to 55768837 11 + TSS region transcription start site region 125818
Adcy4 14 55769057 to 55784095 15038 - protein coding gene adenylate cyclase 4
Cpgi6513 14 55783523 to 55783758 235 CpG island CpG island 6513
Tssr128885 14 55783600 to 55783645 45 - TSS region transcription start site region 128885
Cpgi6514 14 55783907 to 55784281 374 CpG island CpG island 6514
Tssr128886 14 55784007 to 55784019 12 - TSS region transcription start site region 128886
Tssr128887 14 55784027 to 55784073 46 - TSS region transcription start site region 128887
Tssr125819 14 55784118 to 55784180 62 + TSS region transcription start site region 125819
Gm32092 14 55784138 to 55793781 9643 + lncRNA gene predicted gene, 32092
Ripk3 14 55784995 to 55788857 3862 - protein coding gene receptor-interacting serine-threonine kinase 3
Cpgi6515 14 55788107 to 55788979 872 CpG island CpG island 6515
Tssr128888 14 55788715 to 55788729 14 - TSS region transcription start site region 128888
Tssr128889 14 55788736 to 55788749 13 - TSS region transcription start site region 128889
Tssr128890 14 55788759 to 55788793 34 - TSS region transcription start site region 128890
Tssr128891 14 55788810 to 55788828 18 - TSS region transcription start site region 128891
Cpgi6516 14 55815074 to 55815306 232 CpG island CpG island 6516
Gm41159 14 55820012 to 55823432 3420 - lncRNA gene predicted gene, 41159
Cpgi6517 14 55823069 to 55823662 593 CpG island CpG island 6517
Nfatc4 14 55824795 to 55833943 9148 + protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4
Tssr125820 14 55824861 to 55824889 28 + TSS region transcription start site region 125820
Tssr125821 14 55824905 to 55824919 14 + TSS region transcription start site region 125821
Tssr125822 14 55824944 to 55824963 19 + TSS region transcription start site region 125822
Tssr125823 14 55824969 to 55825011 42 + TSS region transcription start site region 125823
Cpgi6518 14 55825245 to 55825811 566 CpG island CpG island 6518
Cpgi6519 14 55826381 to 55826981 600 CpG island CpG island 6519
Cpgi6520 14 55853906 to 55854453 547 CpG island CpG island 6520
Tssr125824 14 55853978 to 55853989 11 + TSS region transcription start site region 125824
Tssr125825 14 55853997 to 55854033 36 + TSS region transcription start site region 125825
Nynrin 14 55854115 to 55874736 20621 + protein coding gene NYN domain and retroviral integrase containing
Tssr125826 14 55854125 to 55854206 81 + TSS region transcription start site region 125826
Gm26751 14 55864311 to 55874735 10424 - lincRNA gene predicted gene, 26751