Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55502193-56262196

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290 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carmil3 14 55490810 to 55508272 17462 + protein coding gene capping protein regulator and myosin 1 linker 3
Cpne6 14 55510445 to 55517431 6986 + protein coding gene copine VI
Tssr4429 14 55510469 to 55510485 16 + TSS region transcription start site region 4429
Tssr4430 14 55510495 to 55510514 19 + TSS region transcription start site region 4430
Tssr125762 14 55510593 to 55510631 38 + TSS region transcription start site region 125762
Tssr128822 14 55511216 to 55511220 4 - TSS region transcription start site region 128822
Nrl 14 55518978 to 55524981 6003 - protein coding gene neural retina leucine zipper gene
Cpgi6495 14 55520444 to 55521267 823 CpG island CpG island 6495
Tssr128823 14 55524209 to 55524223 14 - TSS region transcription start site region 128823
Tssr128824 14 55524266 to 55524270 4 - TSS region transcription start site region 128824
Tssr128825 14 55524916 to 55524930 14 - TSS region transcription start site region 128825
Tssr128826 14 55524938 to 55524967 29 - TSS region transcription start site region 128826
Tssr128827 14 55524975 to 55524985 10 - TSS region transcription start site region 128827
Tssr128828 14 55524989 to 55524996 7 - TSS region transcription start site region 128828
Gm10876 14 55528828 to 55542399 13571 - antisense lncRNA gene predicted gene 10876
Gm49117 14 55537869 to 55539154 1285 + pseudogene predicted gene, 49117
Cpgi6496 14 55540182 to 55540586 404 CpG island CpG island 6496
Pck2 14 55540263 to 55550017 9754 + protein coding gene phosphoenolpyruvate carboxykinase 2 (mitochondrial)
Tssr125763 14 55540288 to 55540315 27 + TSS region transcription start site region 125763
Tssr125764 14 55540351 to 55540370 19 + TSS region transcription start site region 125764
Tssr125765 14 55540372 to 55540446 74 + TSS region transcription start site region 125765
Tssr125766 14 55540467 to 55540478 11 + TSS region transcription start site region 125766
Cpgi6497 14 55559761 to 55560936 1175 CpG island CpG island 6497
A730061H03Rik 14 55559942 to 55560406 464 - protein coding gene RIKEN cDNA A730061H03 gene
Tssr128829 14 55559963 to 55559980 17 - TSS region transcription start site region 128829
Tssr128830 14 55559983 to 55560008 25 - TSS region transcription start site region 128830
Tssr125767 14 55559993 to 55560004 11 + TSS region transcription start site region 125767
Dcaf11 14 55560006 to 55570065 10059 + protein coding gene DDB1 and CUL4 associated factor 11
Tssr125768 14 55560010 to 55560037 27 + TSS region transcription start site region 125768
Tssr128831 14 55560340 to 55560395 55 - TSS region transcription start site region 128831
Tssr125769 14 55560480 to 55560528 48 + TSS region transcription start site region 125769
Tssr125770 14 55560904 to 55560974 70 + TSS region transcription start site region 125770
Tssr125771 14 55561047 to 55561056 9 + TSS region transcription start site region 125771
Tssr125772 14 55561060 to 55561071 11 + TSS region transcription start site region 125772
Gm15932 14 55566159 to 55575991 9832 - antisense lncRNA gene predicted gene 15932
Tssr125773 14 55575534 to 55575568 34 + TSS region transcription start site region 125773
Tssr125774 14 55575619 to 55575660 41 + TSS region transcription start site region 125774
Fitm1 14 55575674 to 55576952 1278 + protein coding gene fat storage-inducing transmembrane protein 1
Tssr4431 14 55575705 to 55575710 5 + TSS region transcription start site region 4431
Tssr125775 14 55575715 to 55575801 86 + TSS region transcription start site region 125775
Cpgi6498 14 55575723 to 55576010 287 CpG island CpG island 6498
Tssr125776 14 55575805 to 55575852 47 + TSS region transcription start site region 125776
Tssr125777 14 55575855 to 55575866 11 + TSS region transcription start site region 125777
Cpgi6499 14 55578154 to 55578700 546 CpG island CpG island 6499
Tssr125778 14 55578161 to 55578180 19 + TSS region transcription start site region 125778
Tssr125779 14 55578356 to 55578366 10 + TSS region transcription start site region 125779
Tssr125780 14 55578422 to 55578437 15 + TSS region transcription start site region 125780
Tssr125781 14 55578444 to 55578539 95 + TSS region transcription start site region 125781
Psme1 14 55578494 to 55581527 3033 + protein coding gene proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Tssr125782 14 55578542 to 55578561 19 + TSS region transcription start site region 125782
Tssr128832 14 55578823 to 55578841 18 - TSS region transcription start site region 128832
Tssr128833 14 55580125 to 55580164 39 - TSS region transcription start site region 128833
Tssr125783 14 55580914 to 55580948 34 + TSS region transcription start site region 125783
Emc9 14 55581516 to 55585302 3786 - protein coding gene ER membrane protein complex subunit 9
Cpgi6500 14 55584719 to 55585311 592 CpG island CpG island 6500
Tssr128834 14 55585250 to 55585317 67 - TSS region transcription start site region 128834
Psme2 14 55587441 to 55591113 3672 - protein coding gene proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
Tssr128835 14 55588317 to 55588328 11 - TSS region transcription start site region 128835
Tssr128836 14 55589985 to 55590003 18 - TSS region transcription start site region 128836
Tssr128837 14 55590810 to 55590849 39 - TSS region transcription start site region 128837
Tssr128838 14 55590918 to 55590969 51 - TSS region transcription start site region 128838
Tssr125784 14 55590985 to 55591006 21 + TSS region transcription start site region 125784
Tssr128839 14 55591054 to 55591070 16 - TSS region transcription start site region 128839
Tssr128840 14 55591077 to 55591118 41 - TSS region transcription start site region 128840
Cpgi6501 14 55591123 to 55592436 1313 CpG island CpG island 6501
Tssr125785 14 55591161 to 55591175 14 + TSS region transcription start site region 125785
Tssr128841 14 55591479 to 55591506 27 - TSS region transcription start site region 128841
Tssr128842 14 55591540 to 55591574 34 - TSS region transcription start site region 128842
Rnf31 14 55591713 to 55603674 11961 + protein coding gene ring finger protein 31
Tssr125786 14 55591725 to 55591785 60 + TSS region transcription start site region 125786
Tssr125787 14 55591786 to 55591809 23 + TSS region transcription start site region 125787
Tssr125788 14 55591819 to 55591859 40 + TSS region transcription start site region 125788
Tssr128843 14 55603969 to 55604002 33 - TSS region transcription start site region 128843
Irf9 14 55603985 to 55610030 6045 + protein coding gene interferon regulatory factor 9
Tssr125789 14 55604173 to 55604230 57 + TSS region transcription start site region 125789
Tssr128844 14 55604423 to 55604436 13 - TSS region transcription start site region 128844
Tssr125790 14 55604497 to 55604534 37 + TSS region transcription start site region 125790
Tssr125791 14 55604550 to 55604564 14 + TSS region transcription start site region 125791
Tssr125792 14 55617997 to 55618011 14 + TSS region transcription start site region 125792
Tssr125793 14 55618023 to 55618037 14 + TSS region transcription start site region 125793
Rec8 14 55618037 to 55625395 7358 + protein coding gene REC8 meiotic recombination protein
Tssr125794 14 55618126 to 55618137 11 + TSS region transcription start site region 125794
Tssr125795 14 55618138 to 55618183 45 + TSS region transcription start site region 125795
Tssr125796 14 55619038 to 55619063 25 + TSS region transcription start site region 125796
Ipo4 14 55625629 to 55635952 10323 - protein coding gene importin 4
Tssr128845 14 55628357 to 55628373 16 - TSS region transcription start site region 128845
Gm49378 14 55629076 to 55637895 8819 - protein coding gene predicted gene, 49378
Cpgi6502 14 55635141 to 55635907 766 CpG island CpG island 6502
Tssr128846 14 55635602 to 55635718 116 - TSS region transcription start site region 128846
Tm9sf1 14 55635965 to 55643806 7841 - protein coding gene transmembrane 9 superfamily member 1
Cpgi6503 14 55642829 to 55643989 1160 CpG island CpG island 6503
Tssr128847 14 55643306 to 55643382 76 - TSS region transcription start site region 128847
Tssr128848 14 55643543 to 55643600 57 - TSS region transcription start site region 128848
Gm49747 14 55643604 to 55646352 2748 + antisense lncRNA gene predicted gene, 49747
Tssr125797 14 55643628 to 55643666 38 + TSS region transcription start site region 125797
Tssr128849 14 55643720 to 55643764 44 - TSS region transcription start site region 128849
Tssr128850 14 55643800 to 55643822 22 - TSS region transcription start site region 128850
Tssr125798 14 55650162 to 55650167 5 + TSS region transcription start site region 125798
Tssr125799 14 55650170 to 55650197 27 + TSS region transcription start site region 125799
Tssk4 14 55650184 to 55652539 2355 + protein coding gene testis-specific serine kinase 4
Tssr125800 14 55650201 to 55650226 25 + TSS region transcription start site region 125800
Tssr125801 14 55650228 to 55650235 7 + TSS region transcription start site region 125801
Gm49299 14 55654845 to 55658208 3363 - pseudogene predicted gene, 49299
Mdp1 14 55657879 to 55660508 2629 - protein coding gene magnesium-dependent phosphatase 1
Cpgi6504 14 55659970 to 55660667 697 CpG island CpG island 6504
Tssr128851 14 55660239 to 55660259 20 - TSS region transcription start site region 128851
Tssr128852 14 55660273 to 55660314 41 - TSS region transcription start site region 128852
Tssr128853 14 55660397 to 55660466 69 - TSS region transcription start site region 128853
Nedd8 14 55662267 to 55671906 9639 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 8
Tssr128854 14 55663451 to 55663461 10 - TSS region transcription start site region 128854
Tssr125802 14 55671151 to 55671152 1 + TSS region transcription start site region 125802
Cpgi6505 14 55671636 to 55672426 790 CpG island CpG island 6505
Tssr128855 14 55671858 to 55671869 11 - TSS region transcription start site region 128855
Tssr128856 14 55671873 to 55671918 45 - TSS region transcription start site region 128856
Gmpr2 14 55671941 to 55679200 7259 + protein coding gene guanosine monophosphate reductase 2
Tssr128857 14 55672064 to 55672125 61 - TSS region transcription start site region 128857
Tssr128858 14 55672136 to 55672147 11 - TSS region transcription start site region 128858
Tssr128859 14 55672169 to 55672179 10 - TSS region transcription start site region 128859
Tssr128860 14 55672193 to 55672208 15 - TSS region transcription start site region 128860
Tssr125803 14 55672250 to 55672298 48 + TSS region transcription start site region 125803
Tssr125804 14 55672308 to 55672315 7 + TSS region transcription start site region 125804
Tssr125805 14 55672371 to 55672391 20 + TSS region transcription start site region 125805
Tinf2 14 55676208 to 55682624 6416 - protein coding gene Terf1 (TRF1)-interacting nuclear factor 2
Cpgi6506 14 55681163 to 55682108 945 CpG island CpG island 6506
Tssr128861 14 55681460 to 55681558 98 - TSS region transcription start site region 128861
Tssr128862 14 55681741 to 55681756 15 - TSS region transcription start site region 128862
Tssr128863 14 55681776 to 55681818 42 - TSS region transcription start site region 128863
Gm49067 14 55681918 to 55712282 30364 + antisense lncRNA gene predicted gene, 49067
Gm25887 14 55683834 to 55683917 83 - snRNA gene predicted gene, 25887
Tgm1 14 55700009 to 55713921 13912 - protein coding gene transglutaminase 1, K polypeptide
Tssr128864 14 55709475 to 55709486 11 - TSS region transcription start site region 128864
Cpgi6507 14 55712473 to 55712734 261 CpG island CpG island 6507
Tssr128865 14 55713106 to 55713110 4 - TSS region transcription start site region 128865
Cpgi6508 14 55713197 to 55713556 359 CpG island CpG island 6508
Tssr128866 14 55713482 to 55713503 21 - TSS region transcription start site region 128866
Rabggta 14 55715877 to 55722368 6491 - protein coding gene Rab geranylgeranyl transferase, a subunit
Tssr128867 14 55721261 to 55721275 14 - TSS region transcription start site region 128867
Cpgi6509 14 55721634 to 55722418 784 CpG island CpG island 6509
Tssr128868 14 55721860 to 55721894 34 - TSS region transcription start site region 128868
Tssr128869 14 55721896 to 55721930 34 - TSS region transcription start site region 128869
Tssr128870 14 55722192 to 55722211 19 - TSS region transcription start site region 128870
Tssr128871 14 55722223 to 55722264 41 - TSS region transcription start site region 128871
Tssr128872 14 55727774 to 55727783 9 - TSS region transcription start site region 128872
Dhrs1 14 55739020 to 55745684 6664 - protein coding gene dehydrogenase/reductase (SDR family) member 1
Tssr128873 14 55739602 to 55739613 11 - TSS region transcription start site region 128873
Tssr128874 14 55743846 to 55743874 28 - TSS region transcription start site region 128874
Cpgi6510 14 55745307 to 55746550 1243 CpG island CpG island 6510
Tssr128875 14 55745453 to 55745483 30 - TSS region transcription start site region 128875
Tssr128876 14 55745486 to 55745502 16 - TSS region transcription start site region 128876
Tssr128877 14 55745524 to 55745642 118 - TSS region transcription start site region 128877
Tssr128878 14 55745647 to 55745658 11 - TSS region transcription start site region 128878
Tssr125806 14 55745678 to 55745776 98 + TSS region transcription start site region 125806
Tssr128879 14 55745680 to 55745701 21 - TSS region transcription start site region 128879
Nop9 14 55745693 to 55755500 9807 + protein coding gene NOP9 nucleolar protein
Tssr125807 14 55745795 to 55745804 9 + TSS region transcription start site region 125807
Tssr125808 14 55745878 to 55745891 13 + TSS region transcription start site region 125808
Tssr125809 14 55745893 to 55745918 25 + TSS region transcription start site region 125809
Tssr125810 14 55745921 to 55745932 11 + TSS region transcription start site region 125810
Cideb 14 55754052 to 55758424 4372 - protein coding gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
Tssr128880 14 55754454 to 55754482 28 - TSS region transcription start site region 128880
Tssr125811 14 55757830 to 55757856 26 + TSS region transcription start site region 125811
Tssr125812 14 55757866 to 55757893 27 + TSS region transcription start site region 125812
Tssr4432 14 55757970 to 55757988 18 - TSS region transcription start site region 4432
Tssr128881 14 55758308 to 55758313 5 - TSS region transcription start site region 128881
Tssr128882 14 55758331 to 55758342 11 - TSS region transcription start site region 128882
Tssr128883 14 55758343 to 55758436 93 - TSS region transcription start site region 128883
Tssr4433 14 55758438 to 55758445 7 - TSS region transcription start site region 4433
Tssr4434 14 55758455 to 55758460 5 - TSS region transcription start site region 4434
Tssr128884 14 55758463 to 55758489 26 - TSS region transcription start site region 128884
Tssr125813 14 55761385 to 55761401 16 + TSS region transcription start site region 125813
Tssr125814 14 55761408 to 55761436 28 + TSS region transcription start site region 125814
Ltb4r2 14 55761428 to 55765138 3710 + protein coding gene leukotriene B4 receptor 2
Cpgi6511 14 55761814 to 55763024 1210 CpG island CpG island 6511
Tssr125815 14 55764687 to 55764728 41 + TSS region transcription start site region 125815
Tssr4435 14 55765706 to 55765709 3 - TSS region transcription start site region 4435
Tssr125816 14 55765834 to 55765867 33 + TSS region transcription start site region 125816
Tssr125817 14 55765956 to 55765999 43 + TSS region transcription start site region 125817
Ltb4r1 14 55765962 to 55768494 2532 + protein coding gene leukotriene B4 receptor 1
Cpgi6512 14 55767495 to 55768407 912 CpG island CpG island 6512
Tssr125818 14 55768826 to 55768837 11 + TSS region transcription start site region 125818
Adcy4 14 55769057 to 55784095 15038 - protein coding gene adenylate cyclase 4
Cpgi6513 14 55783523 to 55783758 235 CpG island CpG island 6513
Tssr128885 14 55783600 to 55783645 45 - TSS region transcription start site region 128885
Cpgi6514 14 55783907 to 55784281 374 CpG island CpG island 6514
Tssr128886 14 55784007 to 55784019 12 - TSS region transcription start site region 128886
Tssr128887 14 55784027 to 55784073 46 - TSS region transcription start site region 128887
Tssr125819 14 55784118 to 55784180 62 + TSS region transcription start site region 125819
Gm32092 14 55784138 to 55793781 9643 + lncRNA gene predicted gene, 32092
Ripk3 14 55784995 to 55788857 3862 - protein coding gene receptor-interacting serine-threonine kinase 3
Cpgi6515 14 55788107 to 55788979 872 CpG island CpG island 6515
Tssr128888 14 55788715 to 55788729 14 - TSS region transcription start site region 128888
Tssr128889 14 55788736 to 55788749 13 - TSS region transcription start site region 128889
Tssr128890 14 55788759 to 55788793 34 - TSS region transcription start site region 128890
Tssr128891 14 55788810 to 55788828 18 - TSS region transcription start site region 128891
Cpgi6516 14 55815074 to 55815306 232 CpG island CpG island 6516
Gm41159 14 55820012 to 55823432 3420 - lncRNA gene predicted gene, 41159
Cpgi6517 14 55823069 to 55823662 593 CpG island CpG island 6517
Nfatc4 14 55824795 to 55833943 9148 + protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4
Tssr125820 14 55824861 to 55824889 28 + TSS region transcription start site region 125820
Tssr125821 14 55824905 to 55824919 14 + TSS region transcription start site region 125821