Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55443616-59753617

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647 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Modor2 14 24925824 to 57942312 33016488 QTL modifier of ocular retardation 2
Hcbip1 14 47097793 to 59725144 12627351 QTL hexachlorobenzene induced porphyria 1
Gm41158 14 55466366 to 55468537 2171 - lncRNA gene predicted gene, 41158
Cpgi6492 14 55478610 to 55478996 386 CpG island CpG island 6492
Tssr125755 14 55478753 to 55478767 14 + TSS region transcription start site region 125755
Dhrs4 14 55478758 to 55490340 11582 + protein coding gene dehydrogenase/reductase (SDR family) member 4
Tssr125756 14 55478770 to 55478795 25 + TSS region transcription start site region 125756
Tssr125757 14 55478802 to 55478807 5 + TSS region transcription start site region 125757
Tssr125758 14 55478815 to 55478820 5 + TSS region transcription start site region 125758
Tssr125759 14 55478867 to 55478914 47 + TSS region transcription start site region 125759
Tssr125760 14 55478924 to 55478941 17 + TSS region transcription start site region 125760
Cpgi6493 14 55479937 to 55480204 267 CpG island CpG island 6493
A630031M23Rik 14 55481589 to 55484027 2438 unclassified gene Riken cDNA A630031M23 gene
Cpgi6494 14 55490430 to 55491866 1436 CpG island CpG island 6494
Tssr128821 14 55490605 to 55490608 3 - TSS region transcription start site region 128821
Carmil3 14 55490810 to 55508272 17462 + protein coding gene capping protein regulator and myosin 1 linker 3
Tssr125761 14 55491062 to 55491136 74 + TSS region transcription start site region 125761
Cpne6 14 55510445 to 55517431 6986 + protein coding gene copine VI
Tssr4429 14 55510469 to 55510485 16 + TSS region transcription start site region 4429
Tssr4430 14 55510495 to 55510514 19 + TSS region transcription start site region 4430
Tssr125762 14 55510593 to 55510631 38 + TSS region transcription start site region 125762
Tssr128822 14 55511216 to 55511220 4 - TSS region transcription start site region 128822
Nrl 14 55518978 to 55524981 6003 - protein coding gene neural retina leucine zipper gene
Cpgi6495 14 55520444 to 55521267 823 CpG island CpG island 6495
Tssr128823 14 55524209 to 55524223 14 - TSS region transcription start site region 128823
Tssr128824 14 55524266 to 55524270 4 - TSS region transcription start site region 128824
Tssr128825 14 55524916 to 55524930 14 - TSS region transcription start site region 128825
Tssr128826 14 55524938 to 55524967 29 - TSS region transcription start site region 128826
Tssr128827 14 55524975 to 55524985 10 - TSS region transcription start site region 128827
Tssr128828 14 55524989 to 55524996 7 - TSS region transcription start site region 128828
Gm10876 14 55528828 to 55542399 13571 - antisense lncRNA gene predicted gene 10876
Gm49117 14 55537869 to 55539154 1285 + pseudogene predicted gene, 49117
Cpgi6496 14 55540182 to 55540586 404 CpG island CpG island 6496
Pck2 14 55540263 to 55550017 9754 + protein coding gene phosphoenolpyruvate carboxykinase 2 (mitochondrial)
Tssr125763 14 55540288 to 55540315 27 + TSS region transcription start site region 125763
Tssr125764 14 55540351 to 55540370 19 + TSS region transcription start site region 125764
Tssr125765 14 55540372 to 55540446 74 + TSS region transcription start site region 125765
Tssr125766 14 55540467 to 55540478 11 + TSS region transcription start site region 125766
Cpgi6497 14 55559761 to 55560936 1175 CpG island CpG island 6497
A730061H03Rik 14 55559942 to 55560406 464 - protein coding gene RIKEN cDNA A730061H03 gene
Tssr128829 14 55559963 to 55559980 17 - TSS region transcription start site region 128829
Tssr128830 14 55559983 to 55560008 25 - TSS region transcription start site region 128830
Tssr125767 14 55559993 to 55560004 11 + TSS region transcription start site region 125767
Dcaf11 14 55560006 to 55570065 10059 + protein coding gene DDB1 and CUL4 associated factor 11
Tssr125768 14 55560010 to 55560037 27 + TSS region transcription start site region 125768
Tssr128831 14 55560340 to 55560395 55 - TSS region transcription start site region 128831
Tssr125769 14 55560480 to 55560528 48 + TSS region transcription start site region 125769
Tssr125770 14 55560904 to 55560974 70 + TSS region transcription start site region 125770
Tssr125771 14 55561047 to 55561056 9 + TSS region transcription start site region 125771
Tssr125772 14 55561060 to 55561071 11 + TSS region transcription start site region 125772
Gm15932 14 55566159 to 55575991 9832 - antisense lncRNA gene predicted gene 15932
Tssr125773 14 55575534 to 55575568 34 + TSS region transcription start site region 125773
Tssr125774 14 55575619 to 55575660 41 + TSS region transcription start site region 125774
Fitm1 14 55575674 to 55576952 1278 + protein coding gene fat storage-inducing transmembrane protein 1
Tssr4431 14 55575705 to 55575710 5 + TSS region transcription start site region 4431
Tssr125775 14 55575715 to 55575801 86 + TSS region transcription start site region 125775
Cpgi6498 14 55575723 to 55576010 287 CpG island CpG island 6498
Tssr125776 14 55575805 to 55575852 47 + TSS region transcription start site region 125776
Tssr125777 14 55575855 to 55575866 11 + TSS region transcription start site region 125777
Cpgi6499 14 55578154 to 55578700 546 CpG island CpG island 6499
Tssr125778 14 55578161 to 55578180 19 + TSS region transcription start site region 125778
Tssr125779 14 55578356 to 55578366 10 + TSS region transcription start site region 125779
Tssr125780 14 55578422 to 55578437 15 + TSS region transcription start site region 125780
Tssr125781 14 55578444 to 55578539 95 + TSS region transcription start site region 125781
Psme1 14 55578494 to 55581527 3033 + protein coding gene proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Tssr125782 14 55578542 to 55578561 19 + TSS region transcription start site region 125782
Tssr128832 14 55578823 to 55578841 18 - TSS region transcription start site region 128832
Tssr128833 14 55580125 to 55580164 39 - TSS region transcription start site region 128833
Tssr125783 14 55580914 to 55580948 34 + TSS region transcription start site region 125783
Emc9 14 55581516 to 55585302 3786 - protein coding gene ER membrane protein complex subunit 9
Cpgi6500 14 55584719 to 55585311 592 CpG island CpG island 6500
Tssr128834 14 55585250 to 55585317 67 - TSS region transcription start site region 128834
Psme2 14 55587441 to 55591113 3672 - protein coding gene proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
Tssr128835 14 55588317 to 55588328 11 - TSS region transcription start site region 128835
Tssr128836 14 55589985 to 55590003 18 - TSS region transcription start site region 128836
Tssr128837 14 55590810 to 55590849 39 - TSS region transcription start site region 128837
Tssr128838 14 55590918 to 55590969 51 - TSS region transcription start site region 128838
Tssr125784 14 55590985 to 55591006 21 + TSS region transcription start site region 125784
Tssr128839 14 55591054 to 55591070 16 - TSS region transcription start site region 128839
Tssr128840 14 55591077 to 55591118 41 - TSS region transcription start site region 128840
Cpgi6501 14 55591123 to 55592436 1313 CpG island CpG island 6501
Tssr125785 14 55591161 to 55591175 14 + TSS region transcription start site region 125785
Tssr128841 14 55591479 to 55591506 27 - TSS region transcription start site region 128841
Tssr128842 14 55591540 to 55591574 34 - TSS region transcription start site region 128842
Rnf31 14 55591713 to 55603674 11961 + protein coding gene ring finger protein 31
Tssr125786 14 55591725 to 55591785 60 + TSS region transcription start site region 125786
Tssr125787 14 55591786 to 55591809 23 + TSS region transcription start site region 125787
Tssr125788 14 55591819 to 55591859 40 + TSS region transcription start site region 125788
Tssr128843 14 55603969 to 55604002 33 - TSS region transcription start site region 128843
Irf9 14 55603985 to 55610030 6045 + protein coding gene interferon regulatory factor 9
Tssr125789 14 55604173 to 55604230 57 + TSS region transcription start site region 125789
Tssr128844 14 55604423 to 55604436 13 - TSS region transcription start site region 128844
Tssr125790 14 55604497 to 55604534 37 + TSS region transcription start site region 125790
Tssr125791 14 55604550 to 55604564 14 + TSS region transcription start site region 125791
Tssr125792 14 55617997 to 55618011 14 + TSS region transcription start site region 125792
Tssr125793 14 55618023 to 55618037 14 + TSS region transcription start site region 125793
Rec8 14 55618037 to 55625395 7358 + protein coding gene REC8 meiotic recombination protein
Tssr125794 14 55618126 to 55618137 11 + TSS region transcription start site region 125794
Tssr125795 14 55618138 to 55618183 45 + TSS region transcription start site region 125795
Tssr125796 14 55619038 to 55619063 25 + TSS region transcription start site region 125796
Ipo4 14 55625629 to 55635952 10323 - protein coding gene importin 4
Tssr128845 14 55628357 to 55628373 16 - TSS region transcription start site region 128845
Gm49378 14 55629076 to 55637895 8819 - protein coding gene predicted gene, 49378
Cpgi6502 14 55635141 to 55635907 766 CpG island CpG island 6502
Tssr128846 14 55635602 to 55635718 116 - TSS region transcription start site region 128846
Tm9sf1 14 55635965 to 55643806 7841 - protein coding gene transmembrane 9 superfamily member 1
Cpgi6503 14 55642829 to 55643989 1160 CpG island CpG island 6503
Tssr128847 14 55643306 to 55643382 76 - TSS region transcription start site region 128847
Tssr128848 14 55643543 to 55643600 57 - TSS region transcription start site region 128848
Gm49747 14 55643604 to 55646352 2748 + antisense lncRNA gene predicted gene, 49747
Tssr125797 14 55643628 to 55643666 38 + TSS region transcription start site region 125797
Tssr128849 14 55643720 to 55643764 44 - TSS region transcription start site region 128849
Tssr128850 14 55643800 to 55643822 22 - TSS region transcription start site region 128850
Tssr125798 14 55650162 to 55650167 5 + TSS region transcription start site region 125798
Tssr125799 14 55650170 to 55650197 27 + TSS region transcription start site region 125799
Tssk4 14 55650184 to 55652539 2355 + protein coding gene testis-specific serine kinase 4
Tssr125800 14 55650201 to 55650226 25 + TSS region transcription start site region 125800
Tssr125801 14 55650228 to 55650235 7 + TSS region transcription start site region 125801
Gm49299 14 55654845 to 55658208 3363 - pseudogene predicted gene, 49299
Mdp1 14 55657879 to 55660508 2629 - protein coding gene magnesium-dependent phosphatase 1
Cpgi6504 14 55659970 to 55660667 697 CpG island CpG island 6504
Tssr128851 14 55660239 to 55660259 20 - TSS region transcription start site region 128851
Tssr128852 14 55660273 to 55660314 41 - TSS region transcription start site region 128852
Tssr128853 14 55660397 to 55660466 69 - TSS region transcription start site region 128853
Nedd8 14 55662267 to 55671906 9639 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 8
Tssr128854 14 55663451 to 55663461 10 - TSS region transcription start site region 128854
Tssr125802 14 55671151 to 55671152 1 + TSS region transcription start site region 125802
Cpgi6505 14 55671636 to 55672426 790 CpG island CpG island 6505
Tssr128855 14 55671858 to 55671869 11 - TSS region transcription start site region 128855
Tssr128856 14 55671873 to 55671918 45 - TSS region transcription start site region 128856
Gmpr2 14 55671941 to 55679200 7259 + protein coding gene guanosine monophosphate reductase 2
Tssr128857 14 55672064 to 55672125 61 - TSS region transcription start site region 128857
Tssr128858 14 55672136 to 55672147 11 - TSS region transcription start site region 128858
Tssr128859 14 55672169 to 55672179 10 - TSS region transcription start site region 128859
Tssr128860 14 55672193 to 55672208 15 - TSS region transcription start site region 128860
Tssr125803 14 55672250 to 55672298 48 + TSS region transcription start site region 125803
Tssr125804 14 55672308 to 55672315 7 + TSS region transcription start site region 125804
Tssr125805 14 55672371 to 55672391 20 + TSS region transcription start site region 125805
Tinf2 14 55676208 to 55682624 6416 - protein coding gene Terf1 (TRF1)-interacting nuclear factor 2
Cpgi6506 14 55681163 to 55682108 945 CpG island CpG island 6506
Tssr128861 14 55681460 to 55681558 98 - TSS region transcription start site region 128861
Tssr128862 14 55681741 to 55681756 15 - TSS region transcription start site region 128862
Tssr128863 14 55681776 to 55681818 42 - TSS region transcription start site region 128863
Gm49067 14 55681918 to 55712282 30364 + antisense lncRNA gene predicted gene, 49067
Gm25887 14 55683834 to 55683917 83 - snRNA gene predicted gene, 25887
Tgm1 14 55700009 to 55713921 13912 - protein coding gene transglutaminase 1, K polypeptide
Tssr128864 14 55709475 to 55709486 11 - TSS region transcription start site region 128864
Cpgi6507 14 55712473 to 55712734 261 CpG island CpG island 6507
Tssr128865 14 55713106 to 55713110 4 - TSS region transcription start site region 128865
Cpgi6508 14 55713197 to 55713556 359 CpG island CpG island 6508
Tssr128866 14 55713482 to 55713503 21 - TSS region transcription start site region 128866
Rabggta 14 55715877 to 55722368 6491 - protein coding gene Rab geranylgeranyl transferase, a subunit
Tssr128867 14 55721261 to 55721275 14 - TSS region transcription start site region 128867
Cpgi6509 14 55721634 to 55722418 784 CpG island CpG island 6509
Tssr128868 14 55721860 to 55721894 34 - TSS region transcription start site region 128868
Tssr128869 14 55721896 to 55721930 34 - TSS region transcription start site region 128869
Tssr128870 14 55722192 to 55722211 19 - TSS region transcription start site region 128870
Tssr128871 14 55722223 to 55722264 41 - TSS region transcription start site region 128871
Tssr128872 14 55727774 to 55727783 9 - TSS region transcription start site region 128872
Dhrs1 14 55739020 to 55745684 6664 - protein coding gene dehydrogenase/reductase (SDR family) member 1
Tssr128873 14 55739602 to 55739613 11 - TSS region transcription start site region 128873
Tssr128874 14 55743846 to 55743874 28 - TSS region transcription start site region 128874
Cpgi6510 14 55745307 to 55746550 1243 CpG island CpG island 6510
Tssr128875 14 55745453 to 55745483 30 - TSS region transcription start site region 128875
Tssr128876 14 55745486 to 55745502 16 - TSS region transcription start site region 128876
Tssr128877 14 55745524 to 55745642 118 - TSS region transcription start site region 128877
Tssr128878 14 55745647 to 55745658 11 - TSS region transcription start site region 128878
Tssr125806 14 55745678 to 55745776 98 + TSS region transcription start site region 125806
Tssr128879 14 55745680 to 55745701 21 - TSS region transcription start site region 128879
Nop9 14 55745693 to 55755500 9807 + protein coding gene NOP9 nucleolar protein
Tssr125807 14 55745795 to 55745804 9 + TSS region transcription start site region 125807
Tssr125808 14 55745878 to 55745891 13 + TSS region transcription start site region 125808
Tssr125809 14 55745893 to 55745918 25 + TSS region transcription start site region 125809
Tssr125810 14 55745921 to 55745932 11 + TSS region transcription start site region 125810
Cideb 14 55754052 to 55758424 4372 - protein coding gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
Tssr128880 14 55754454 to 55754482 28 - TSS region transcription start site region 128880
Tssr125811 14 55757830 to 55757856 26 + TSS region transcription start site region 125811
Tssr125812 14 55757866 to 55757893 27 + TSS region transcription start site region 125812
Tssr4432 14 55757970 to 55757988 18 - TSS region transcription start site region 4432
Tssr128881 14 55758308 to 55758313 5 - TSS region transcription start site region 128881
Tssr128882 14 55758331 to 55758342 11 - TSS region transcription start site region 128882
Tssr128883 14 55758343 to 55758436 93 - TSS region transcription start site region 128883
Tssr4433 14 55758438 to 55758445 7 - TSS region transcription start site region 4433
Tssr4434 14 55758455 to 55758460 5 - TSS region transcription start site region 4434
Tssr128884 14 55758463 to 55758489 26 - TSS region transcription start site region 128884
Tssr125813 14 55761385 to 55761401 16 + TSS region transcription start site region 125813
Tssr125814 14 55761408 to 55761436 28 + TSS region transcription start site region 125814
Ltb4r2 14 55761428 to 55765138 3710 + protein coding gene leukotriene B4 receptor 2
Cpgi6511 14 55761814 to 55763024 1210 CpG island CpG island 6511
Tssr125815 14 55764687 to 55764728 41 + TSS region transcription start site region 125815
Tssr4435 14 55765706 to 55765709 3 - TSS region transcription start site region 4435
Tssr125816 14 55765834 to 55765867 33 + TSS region transcription start site region 125816
Tssr125817 14 55765956 to 55765999 43 + TSS region transcription start site region 125817
Ltb4r1 14 55765962 to 55768494 2532 + protein coding gene leukotriene B4 receptor 1
Cpgi6512 14 55767495 to 55768407 912 CpG island CpG island 6512
Tssr125818 14 55768826 to 55768837 11 + TSS region transcription start site region 125818
Adcy4 14 55769057 to 55784095 15038 - protein coding gene adenylate cyclase 4
Cpgi6513 14 55783523 to 55783758 235 CpG island CpG island 6513
Tssr128885 14 55783600 to 55783645 45 - TSS region transcription start site region 128885
Cpgi6514 14 55783907 to 55784281 374 CpG island CpG island 6514