Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55016834-55540687

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ngdn 14 55015454 to 55024137 8683 + protein coding gene neuroguidin, EIF4E binding protein
Tssr125744 14 55023550 to 55023557 7 + TSS region transcription start site region 125744
Gm10364 14 55038462 to 55042976 4514 + pseudogene predicted pseudogene 10364
Gm20687 14 55053570 to 55072553 18983 + antisense lncRNA gene predicted gene 20687
Tssr125745 14 55053864 to 55053925 61 + TSS region transcription start site region 125745
Cpgi6483 14 55053951 to 55054268 317 CpG island CpG island 6483
Tssr125746 14 55054870 to 55054875 5 + TSS region transcription start site region 125746
Tssr125747 14 55055660 to 55055678 18 + TSS region transcription start site region 125747
Tssr125748 14 55055849 to 55055875 26 + TSS region transcription start site region 125748
Zfhx2 14 55060262 to 55092324 32062 - protein coding gene zinc finger homeobox 2
Cpgi6484 14 55062756 to 55063057 301 CpG island CpG island 6484
Tssr125749 14 55062935 to 55062944 9 + TSS region transcription start site region 125749
Tssr128804 14 55064014 to 55064052 38 - TSS region transcription start site region 128804
Cpgi6485 14 55064872 to 55065396 524 CpG island CpG island 6485
Zfhx2os 14 55073091 to 55075874 2783 + antisense lncRNA gene zinc finger homeobox 2, opposite strand
Cpgi6486 14 55078626 to 55078883 257 CpG island CpG island 6486
Cpgi6487 14 55091377 to 55092489 1112 CpG island CpG island 6487
Tssr128805 14 55091930 to 55091934 4 - TSS region transcription start site region 128805
Tssr128806 14 55092277 to 55092322 45 - TSS region transcription start site region 128806
Tssr128807 14 55092361 to 55092421 60 - TSS region transcription start site region 128807
Cpgi6488 14 55094696 to 55095228 532 CpG island CpG island 6488
Thtpa 14 55094784 to 55098986 4202 + protein coding gene thiamine triphosphatase
Tssr125750 14 55095030 to 55095044 14 + TSS region transcription start site region 125750
Tssr125751 14 55095048 to 55095100 52 + TSS region transcription start site region 125751
Ap1g2 14 55098575 to 55106593 8018 - protein coding gene adaptor protein complex AP-1, gamma 2 subunit
Gm31607 14 55103336 to 55104872 1536 + lncRNA gene predicted gene, 31607
Cpgi6489 14 55104496 to 55104751 255 CpG island CpG island 6489
Cpgi6490 14 55105932 to 55106393 461 CpG island CpG island 6490
Tssr128808 14 55106521 to 55106541 20 - TSS region transcription start site region 128808
Tssr128809 14 55106547 to 55106594 47 - TSS region transcription start site region 128809
Jph4 14 55106826 to 55116935 10109 - protein coding gene junctophilin 4
Tssr128810 14 55107136 to 55107150 14 - TSS region transcription start site region 128810
Cpgi6491 14 55113312 to 55115998 2686 CpG island CpG island 6491
Tssr128811 14 55116165 to 55116190 25 - TSS region transcription start site region 128811
Tssr128812 14 55116204 to 55116226 22 - TSS region transcription start site region 128812
Tssr128813 14 55116228 to 55116273 45 - TSS region transcription start site region 128813
Tssr128814 14 55116397 to 55116408 11 - TSS region transcription start site region 128814
Tssr4427 14 55116413 to 55116416 3 - TSS region transcription start site region 4427
Tssr128815 14 55116547 to 55116554 7 - TSS region transcription start site region 128815
Tssr128816 14 55116561 to 55116585 24 - TSS region transcription start site region 128816
Tssr128817 14 55116586 to 55116609 23 - TSS region transcription start site region 128817
Tssr128818 14 55116615 to 55116637 22 - TSS region transcription start site region 128818
Tssr128819 14 55116640 to 55116649 9 - TSS region transcription start site region 128819
Tssr128820 14 55116944 to 55116980 36 - TSS region transcription start site region 128820
Gm49020 14 55127317 to 55128391 1074 + unclassified gene predicted gene, 49020
Gm23596 14 55161477 to 55161608 131 - snoRNA gene predicted gene, 23596
Gm46455 14 55174658 to 55180181 5523 + lincRNA gene predicted gene, 46455
Tssr125752 14 55222005 to 55222009 4 + TSS region transcription start site region 125752
Dhrs2 14 55222007 to 55241435 19428 + protein coding gene dehydrogenase/reductase member 2
Gm49021 14 55245606 to 55246059 453 - pseudogene predicted gene, 49021
D14Mit27 14 55254865 to 55255031 166 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 27
D14Mit26 14 55254865 to 55254990 125 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 26
D14Mit20 14 55254869 to 55254990 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 20
D14Mit25 14 55254869 to 55255007 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 25
Gm49022 14 55276834 to 55280687 3853 - lincRNA gene predicted gene, 49022
Gm6852 14 55349784 to 55350690 906 - pseudogene predicted gene 6852
Tssr125753 14 55371165 to 55371174 9 + TSS region transcription start site region 125753
Tssr125754 14 55371453 to 55371455 2 + TSS region transcription start site region 125754
D14Dcr12 14 55372863 to 55372960 97 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 12
D14Dcr13 14 55380121 to 55380219 98 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 13
Gm49023 14 55383597 to 55394148 10551 + pseudogene predicted gene, 49023
Tssr4428 14 55385460 to 55385464 4 + TSS region transcription start site region 4428
Gm8894 14 55420125 to 55420788 663 - pseudogene predicted gene 8894
D14Mit63 14 55433118 to 55433233 115 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 63
Gm41158 14 55466366 to 55468537 2171 - lncRNA gene predicted gene, 41158
Cpgi6492 14 55478610 to 55478996 386 CpG island CpG island 6492
Tssr125755 14 55478753 to 55478767 14 + TSS region transcription start site region 125755
Dhrs4 14 55478758 to 55490340 11582 + protein coding gene dehydrogenase/reductase (SDR family) member 4
Tssr125756 14 55478770 to 55478795 25 + TSS region transcription start site region 125756
Tssr125757 14 55478802 to 55478807 5 + TSS region transcription start site region 125757
Tssr125758 14 55478815 to 55478820 5 + TSS region transcription start site region 125758
Tssr125759 14 55478867 to 55478914 47 + TSS region transcription start site region 125759
Tssr125760 14 55478924 to 55478941 17 + TSS region transcription start site region 125760
Cpgi6493 14 55479937 to 55480204 267 CpG island CpG island 6493
A630031M23Rik 14 55481589 to 55484027 2438 unclassified gene Riken cDNA A630031M23 gene
Cpgi6494 14 55490430 to 55491866 1436 CpG island CpG island 6494
Tssr128821 14 55490605 to 55490608 3 - TSS region transcription start site region 128821
Carmil3 14 55490810 to 55508272 17462 + protein coding gene capping protein regulator and myosin 1 linker 3
Tssr125761 14 55491062 to 55491136 74 + TSS region transcription start site region 125761
Cpne6 14 55510445 to 55517431 6986 + protein coding gene copine VI
Tssr4429 14 55510469 to 55510485 16 + TSS region transcription start site region 4429
Tssr4430 14 55510495 to 55510514 19 + TSS region transcription start site region 4430
Tssr125762 14 55510593 to 55510631 38 + TSS region transcription start site region 125762
Tssr128822 14 55511216 to 55511220 4 - TSS region transcription start site region 128822
Nrl 14 55518978 to 55524981 6003 - protein coding gene neural retina leucine zipper gene
Cpgi6495 14 55520444 to 55521267 823 CpG island CpG island 6495
Tssr128823 14 55524209 to 55524223 14 - TSS region transcription start site region 128823
Tssr128824 14 55524266 to 55524270 4 - TSS region transcription start site region 128824
Tssr128825 14 55524916 to 55524930 14 - TSS region transcription start site region 128825
Tssr128826 14 55524938 to 55524967 29 - TSS region transcription start site region 128826
Tssr128827 14 55524975 to 55524985 10 - TSS region transcription start site region 128827
Tssr128828 14 55524989 to 55524996 7 - TSS region transcription start site region 128828
Gm10876 14 55528828 to 55542399 13571 - antisense lncRNA gene predicted gene 10876
Gm49117 14 55537869 to 55539154 1285 + pseudogene predicted gene, 49117
Cpgi6496 14 55540182 to 55540586 404 CpG island CpG island 6496
Pck2 14 55540263 to 55550017 9754 + protein coding gene phosphoenolpyruvate carboxykinase 2 (mitochondrial)
Tssr125763 14 55540288 to 55540315 27 + TSS region transcription start site region 125763
Tssr125764 14 55540351 to 55540370 19 + TSS region transcription start site region 125764
Tssr125765 14 55540372 to 55540446 74 + TSS region transcription start site region 125765
Tssr125766 14 55540467 to 55540478 11 + TSS region transcription start site region 125766