Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:54213998-54434323

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carg1 14 51145002 to 54224198 3079196 QTL Candida albicans resistance gene 1
Tcra 14 52427967 to 54224198 1796231 + complex/cluster/region T cell receptor alpha chain
Traj4 14 54216291 to 54216353 62 + gene segment T cell receptor alpha joining 4
Traj3 14 54217292 to 54217357 65 + gene segment T cell receptor alpha joining 3
Traj2 14 54217836 to 54217901 65 + gene segment T cell receptor alpha joining 2
Tssr128550 14 54218654 to 54218666 12 - TSS region transcription start site region 128550
Traj1 14 54218814 to 54218842 28 + pseudogenic gene segment T cell receptor alpha joining 1
Tssr125596 14 54218829 to 54218834 5 + TSS region transcription start site region 125596
Tssr125597 14 54218974 to 54218985 11 + TSS region transcription start site region 125597
Tssr125598 14 54219030 to 54219039 9 + TSS region transcription start site region 125598
Trac 14 54220521 to 54224198 3677 + gene segment T cell receptor alpha constant
Tssr125599 14 54220566 to 54220585 19 + TSS region transcription start site region 125599
Tssr125600 14 54220696 to 54220710 14 + TSS region transcription start site region 125600
Tssr125601 14 54222237 to 54222256 19 + TSS region transcription start site region 125601
Tssr125602 14 54222364 to 54222374 10 + TSS region transcription start site region 125602
Tssr128551 14 54222486 to 54222499 13 - TSS region transcription start site region 128551
Tssr125603 14 54222738 to 54222754 16 + TSS region transcription start site region 125603
Tssr125604 14 54222774 to 54222789 15 + TSS region transcription start site region 125604
Tssr125605 14 54222808 to 54222819 11 + TSS region transcription start site region 125605
Tssr125606 14 54222838 to 54222850 12 + TSS region transcription start site region 125606
Tssr125607 14 54223715 to 54223733 18 + TSS region transcription start site region 125607
Tssr125608 14 54223962 to 54223972 10 + TSS region transcription start site region 125608
Tssr125609 14 54224033 to 54224047 14 + TSS region transcription start site region 125609
Tssr128552 14 54225285 to 54225299 14 - TSS region transcription start site region 128552
Tssr125610 14 54225451 to 54225460 9 + TSS region transcription start site region 125610
Tssr125611 14 54225946 to 54225958 12 + TSS region transcription start site region 125611
Tssr125612 14 54226050 to 54226060 10 + TSS region transcription start site region 125612
Tssr125613 14 54226063 to 54226100 37 + TSS region transcription start site region 125613
Tssr128553 14 54227356 to 54227383 27 - TSS region transcription start site region 128553
Tssr125614 14 54227678 to 54227689 11 + TSS region transcription start site region 125614
Cpgi6449 14 54229063 to 54229316 253 CpG island CpG island 6449
Cpgi6450 14 54231249 to 54231457 208 CpG island CpG island 6450
Tssr128554 14 54231428 to 54231443 15 - TSS region transcription start site region 128554
Tssr125615 14 54232243 to 54232249 6 + TSS region transcription start site region 125615
Tssr125616 14 54232550 to 54232564 14 + TSS region transcription start site region 125616
Tssr125617 14 54232993 to 54233006 13 + TSS region transcription start site region 125617
Tssr128555 14 54233250 to 54233261 11 - TSS region transcription start site region 128555
Dad1 14 54235485 to 54253929 18444 - protein coding gene defender against cell death 1
Tssr128556 14 54236096 to 54236130 34 - TSS region transcription start site region 128556
Cpgi6451 14 54253550 to 54254240 690 CpG island CpG island 6451
Tssr125618 14 54253647 to 54253657 10 + TSS region transcription start site region 125618
Tssr4409 14 54253666 to 54253671 5 + TSS region transcription start site region 4409
Tssr128557 14 54253710 to 54253721 11 - TSS region transcription start site region 128557
Tssr128558 14 54253759 to 54253770 11 - TSS region transcription start site region 128558
Tssr128559 14 54253843 to 54253904 61 - TSS region transcription start site region 128559
Tssr128560 14 54253907 to 54253920 13 - TSS region transcription start site region 128560
Tssr125619 14 54254124 to 54254247 123 + TSS region transcription start site region 125619
Abhd4 14 54254129 to 54269169 15040 + protein coding gene abhydrolase domain containing 4
Cpgi6452 14 54259070 to 54259660 590 CpG island CpG island 6452
Tssr128561 14 54259135 to 54259158 23 - TSS region transcription start site region 128561
Tssr125620 14 54259227 to 54259241 14 + TSS region transcription start site region 125620
Tssr125621 14 54259242 to 54259300 58 + TSS region transcription start site region 125621
Tssr125622 14 54268720 to 54268724 4 + TSS region transcription start site region 125622
Olfr49 14 54281896 to 54282925 1029 - protein coding gene olfactory receptor 49
Gm43305 14 54293018 to 54297322 4304 - unclassified non-coding RNA gene predicted gene 43305
Gm43304 14 54323998 to 54324323 325 - pseudogene predicted gene 43304
Gm3945 14 54334217 to 54334899 682 + pseudogene predicted gene 3945
5330426L24Rik 14 54349462 to 54351636 2174 - lincRNA gene RIKEN cDNA 5330426L24 gene
Cpgi6453 14 54360712 to 54361534 822 CpG island CpG island 6453
Tssr125623 14 54360826 to 54360851 25 + TSS region transcription start site region 125623
Oxa1l 14 54360841 to 54369669 8828 + protein coding gene oxidase assembly 1-like
Tssr125624 14 54361030 to 54361135 105 + TSS region transcription start site region 125624
Tssr125625 14 54361292 to 54361349 57 + TSS region transcription start site region 125625
Tssr125626 14 54363400 to 54363426 26 + TSS region transcription start site region 125626
Tssr125627 14 54367863 to 54367886 23 + TSS region transcription start site region 125627
Tssr125628 14 54368361 to 54368379 18 + TSS region transcription start site region 125628
Slc7a7 14 54369442 to 54417702 48260 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
Tssr128562 14 54384165 to 54384192 27 - TSS region transcription start site region 128562
Tssr128563 14 54397675 to 54397679 4 - TSS region transcription start site region 128563
Tssr128564 14 54398024 to 54398066 42 - TSS region transcription start site region 128564
Tssr128565 14 54398634 to 54398648 14 - TSS region transcription start site region 128565
Tssr128566 14 54409300 to 54409308 8 - TSS region transcription start site region 128566
Tssr128567 14 54409370 to 54409418 48 - TSS region transcription start site region 128567
Tssr128568 14 54409422 to 54409434 12 - TSS region transcription start site region 128568
Tssr128569 14 54409469 to 54409477 8 - TSS region transcription start site region 128569
Tssr128570 14 54409967 to 54409984 17 - TSS region transcription start site region 128570
Tssr128571 14 54410011 to 54410026 15 - TSS region transcription start site region 128571
Tssr128572 14 54410110 to 54410117 7 - TSS region transcription start site region 128572
Tssr128573 14 54410123 to 54410141 18 - TSS region transcription start site region 128573
Tssr128574 14 54410164 to 54410179 15 - TSS region transcription start site region 128574
Tssr128575 14 54410190 to 54410218 28 - TSS region transcription start site region 128575
Tssr128576 14 54410251 to 54410262 11 - TSS region transcription start site region 128576
Tssr128577 14 54410273 to 54410283 10 - TSS region transcription start site region 128577
Tssr128578 14 54410652 to 54410674 22 - TSS region transcription start site region 128578
Tssr128579 14 54413898 to 54413913 15 - TSS region transcription start site region 128579
Tssr128580 14 54413915 to 54413937 22 - TSS region transcription start site region 128580
Tssr128581 14 54413987 to 54414084 97 - TSS region transcription start site region 128581
Tssr125629 14 54414104 to 54414127 23 + TSS region transcription start site region 125629
Tssr128582 14 54416998 to 54417006 8 - TSS region transcription start site region 128582
Cpgi6454 14 54417426 to 54417671 245 CpG island CpG island 6454
Tssr128583 14 54417626 to 54417648 22 - TSS region transcription start site region 128583
Tssr128584 14 54417739 to 54417750 11 - TSS region transcription start site region 128584
Tssr128585 14 54417781 to 54417810 29 - TSS region transcription start site region 128585
Tssr128586 14 54417813 to 54417835 22 - TSS region transcription start site region 128586
Tssr128587 14 54417839 to 54417865 26 - TSS region transcription start site region 128587
Cpgi6455 14 54426612 to 54427234 622 CpG island CpG island 6455
Tssr125630 14 54426902 to 54426930 28 + TSS region transcription start site region 125630
Mrpl52 14 54426909 to 54429750 2841 + protein coding gene mitochondrial ribosomal protein L52
Tssr125631 14 54427141 to 54427163 22 + TSS region transcription start site region 125631
Tssr125632 14 54428577 to 54428615 38 + TSS region transcription start site region 125632
Tssr125633 14 54431461 to 54431471 10 + TSS region transcription start site region 125633
Cpgi6456 14 54431538 to 54432817 1279 CpG island CpG island 6456
Tssr125634 14 54431597 to 54431673 76 + TSS region transcription start site region 125634
Mmp14 14 54431598 to 54442456 10858 + protein coding gene matrix metallopeptidase 14 (membrane-inserted)
Tssr125635 14 54431696 to 54431707 11 + TSS region transcription start site region 125635