Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:53986560-54376567

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233 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carg1 14 51145002 to 54224198 3079196 QTL Candida albicans resistance gene 1
Tcra 14 52427967 to 54224198 1796231 + complex/cluster/region T cell receptor alpha chain
Gm30392 14 53893586 to 53995588 102002 - lncRNA gene predicted gene, 30392
Tcrd 14 53946073 to 54159198 213125 + complex/cluster/region T cell receptor delta chain
Trdv3 14 54000948 to 54001253 305 + pseudogenic gene segment T cell receptor delta variable 3
Tssr125520 14 54059279 to 54059290 11 + TSS region transcription start site region 125520
Gm30275 14 54067579 to 54125395 57816 - antisense lncRNA gene predicted gene, 30275
Tssr125521 14 54074898 to 54074945 47 + TSS region transcription start site region 125521
Tssr125522 14 54074967 to 54074981 14 + TSS region transcription start site region 125522
Tssr125523 14 54074987 to 54074999 12 + TSS region transcription start site region 125523
Trdv4 14 54075004 to 54075515 511 + gene segment T cell receptor delta variable 4
Tssr125524 14 54075017 to 54075024 7 + TSS region transcription start site region 125524
Tssr128532 14 54075621 to 54075636 15 - TSS region transcription start site region 128532
Tssr125525 14 54075732 to 54075746 14 + TSS region transcription start site region 125525
D14Mit259 14 54109825 to 54109949 124 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 259
Tssr125526 14 54113327 to 54113338 11 + TSS region transcription start site region 125526
Tssr125527 14 54113435 to 54113446 11 + TSS region transcription start site region 125527
Trdd1 14 54113468 to 54113476 8 + gene segment T cell receptor delta diversity 1
Gm23704 14 54117054 to 54117393 339 + unclassified non-coding RNA gene predicted gene, 23704
Tssr125528 14 54120370 to 54120393 23 + TSS region transcription start site region 125528
Tssr125529 14 54121470 to 54121491 21 + TSS region transcription start site region 125529
Tssr125530 14 54121875 to 54121904 29 + TSS region transcription start site region 125530
Tssr125531 14 54121907 to 54121923 16 + TSS region transcription start site region 125531
Tssr125532 14 54121925 to 54121936 11 + TSS region transcription start site region 125532
Tssr125533 14 54122037 to 54122040 3 + TSS region transcription start site region 125533
Tssr125534 14 54122113 to 54122133 20 + TSS region transcription start site region 125534
Tssr125535 14 54122142 to 54122147 5 + TSS region transcription start site region 125535
Tssr125536 14 54122161 to 54122184 23 + TSS region transcription start site region 125536
Tssr125537 14 54122190 to 54122228 38 + TSS region transcription start site region 125537
Trdd2 14 54122226 to 54122241 15 + gene segment T cell receptor delta diversity 2
Tssr125538 14 54122230 to 54122248 18 + TSS region transcription start site region 125538
Tssr125539 14 54123123 to 54123159 36 + TSS region transcription start site region 125539
Trdj1 14 54123138 to 54123188 50 + gene segment T cell receptor delta joining 1
Tssr128533 14 54123584 to 54123630 46 - TSS region transcription start site region 128533
Tssr128534 14 54125413 to 54125425 12 - TSS region transcription start site region 128534
Gm43434 14 54128298 to 54146287 17989 - antisense lncRNA gene predicted gene 43434
Tssr125540 14 54136740 to 54136750 10 + TSS region transcription start site region 125540
Trdj2 14 54136779 to 54136837 58 + gene segment T cell receptor delta joining 2
Tssr128535 14 54138261 to 54138286 25 - TSS region transcription start site region 128535
Tssr125541 14 54138492 to 54138537 45 + TSS region transcription start site region 125541
Trdc 14 54142851 to 54146108 3257 + gene segment T cell receptor delta, constant region
Trdv5 14 54148662 to 54149201 539 - gene segment T cell receptor delta variable 5
Tssr128536 14 54149221 to 54149240 19 - TSS region transcription start site region 128536
Tssr128537 14 54149248 to 54149259 11 - TSS region transcription start site region 128537
Tssr128538 14 54149261 to 54149280 19 - TSS region transcription start site region 128538
Tssr128539 14 54149335 to 54149343 8 - TSS region transcription start site region 128539
Tssr128540 14 54151399 to 54151410 11 - TSS region transcription start site region 128540
Tssr125542 14 54153146 to 54153164 18 + TSS region transcription start site region 125542
Tssr125543 14 54153190 to 54153200 10 + TSS region transcription start site region 125543
Tssr125544 14 54153206 to 54153231 25 + TSS region transcription start site region 125544
Tssr125545 14 54153253 to 54153264 11 + TSS region transcription start site region 125545
Traj61 14 54155005 to 54155076 71 + pseudogenic gene segment T cell receptor alpha joining 61
Traj60 14 54155933 to 54155985 52 + pseudogenic gene segment T cell receptor alpha joining 60
Traj59 14 54156133 to 54156194 61 + gene segment T cell receptor alpha joining 59
Tssr125546 14 54157267 to 54157274 7 + TSS region transcription start site region 125546
Traj58 14 54157280 to 54157342 62 + gene segment T cell receptor alpha joining 58
Tssr125547 14 54158456 to 54158467 11 + TSS region transcription start site region 125547
Traj57 14 54158507 to 54158569 62 + gene segment T cell receptor alpha joining 57
Tssr125548 14 54159028 to 54159035 7 + TSS region transcription start site region 125548
Traj56 14 54159263 to 54159325 62 + gene segment T cell receptor alpha joining 56
Traj55 14 54161439 to 54161501 62 + pseudogenic gene segment T cell receptor alpha joining 55
Traj54 14 54161990 to 54162043 53 + pseudogenic gene segment T cell receptor alpha joining 54
Traj53 14 54162644 to 54162709 65 + gene segment T cell receptor alpha joining 53
Traj52 14 54165316 to 54165381 65 + gene segment T cell receptor alpha joining 52
Traj51 14 54166239 to 54166281 42 + pseudogenic gene segment T cell receptor alpha joining 51
Tssr125549 14 54166521 to 54166546 25 + TSS region transcription start site region 125549
Tssr125550 14 54166549 to 54166576 27 + TSS region transcription start site region 125550
Traj50 14 54167590 to 54167652 62 + gene segment T cell receptor alpha joining 50
Tssr128541 14 54168016 to 54168019 3 - TSS region transcription start site region 128541
Tssr125551 14 54168550 to 54168561 11 + TSS region transcription start site region 125551
Tssr125552 14 54168596 to 54168605 9 + TSS region transcription start site region 125552
Tssr125553 14 54168642 to 54168653 11 + TSS region transcription start site region 125553
Tssr125554 14 54168655 to 54168683 28 + TSS region transcription start site region 125554
Traj49 14 54168686 to 54168744 58 + gene segment T cell receptor alpha joining 49
Traj48 14 54169808 to 54169868 60 + gene segment T cell receptor alpha joining 48
Tssr128542 14 54171350 to 54171356 6 - TSS region transcription start site region 128542
Tssr125555 14 54171575 to 54171582 7 + TSS region transcription start site region 125555
Tssr125556 14 54171800 to 54171811 11 + TSS region transcription start site region 125556
Traj47 14 54171802 to 54171856 54 + gene segment T cell receptor alpha joining 47
Tssr125557 14 54172109 to 54172112 3 + TSS region transcription start site region 125557
Traj46 14 54172338 to 54172398 60 + gene segment T cell receptor alpha joining 46
Traj45 14 54172831 to 54172890 59 + gene segment T cell receptor alpha joining 45
Tssr125558 14 54173527 to 54173534 7 + TSS region transcription start site region 125558
Tssr125559 14 54173538 to 54173554 16 + TSS region transcription start site region 125559
Tssr125560 14 54173558 to 54173590 32 + TSS region transcription start site region 125560
Tssr125561 14 54173597 to 54173604 7 + TSS region transcription start site region 125561
Traj44 14 54173690 to 54173750 60 + gene segment T cell receptor alpha joining 44
Tssr125562 14 54174398 to 54174401 3 + TSS region transcription start site region 125562
Tssr125563 14 54174600 to 54174626 26 + TSS region transcription start site region 125563
Traj43 14 54174742 to 54174798 56 + gene segment T cell receptor alpha joining 43
Tssr125564 14 54174865 to 54174879 14 + TSS region transcription start site region 125564
Tssr125565 14 54174954 to 54174968 14 + TSS region transcription start site region 125565
Traj42 14 54175773 to 54175836 63 + gene segment T cell receptor alpha joining 42
Tssr125566 14 54175974 to 54175982 8 + TSS region transcription start site region 125566
Tssr125567 14 54176208 to 54176219 11 + TSS region transcription start site region 125567
Tssr125568 14 54176227 to 54176236 9 + TSS region transcription start site region 125568
Tssr125569 14 54176253 to 54176256 3 + TSS region transcription start site region 125569
Tssr125570 14 54176271 to 54176285 14 + TSS region transcription start site region 125570
Traj41 14 54176271 to 54176325 54 + gene segment T cell receptor alpha joining 41
Tssr128543 14 54176657 to 54176662 5 - TSS region transcription start site region 128543
Traj40 14 54177921 to 54177981 60 + gene segment T cell receptor alpha joining 40
Tssr125571 14 54179524 to 54179530 6 + TSS region transcription start site region 125571
Tssr125572 14 54179647 to 54179660 13 + TSS region transcription start site region 125572
Tssr125573 14 54179712 to 54179722 10 + TSS region transcription start site region 125573
Traj39 14 54179962 to 54180024 62 + gene segment T cell receptor alpha joining 39
Traj38 14 54180574 to 54180635 61 + gene segment T cell receptor alpha joining 38
Tssr128544 14 54181230 to 54181249 19 - TSS region transcription start site region 128544
Tssr125574 14 54181421 to 54181438 17 + TSS region transcription start site region 125574
Tssr125575 14 54181484 to 54181511 27 + TSS region transcription start site region 125575
Tssr125576 14 54181516 to 54181548 32 + TSS region transcription start site region 125576
Traj37 14 54181518 to 54181577 59 + gene segment T cell receptor alpha joining 37
Tssr125577 14 54181560 to 54181567 7 + TSS region transcription start site region 125577
Tssr125578 14 54181630 to 54181633 3 + TSS region transcription start site region 125578
Traj36 14 54182402 to 54182464 62 + pseudogenic gene segment T cell receptor alpha joining 36
Traj35 14 54183774 to 54183838 64 + gene segment T cell receptor alpha joining 35
Traj34 14 54184699 to 54184756 57 + gene segment T cell receptor alpha joining 34
Traj33 14 54185358 to 54185414 56 + gene segment T cell receptor alpha joining 33
Tssr125579 14 54185846 to 54185851 5 + TSS region transcription start site region 125579
Tssr125580 14 54185990 to 54186004 14 + TSS region transcription start site region 125580
Traj32 14 54186101 to 54186166 65 + gene segment T cell receptor alpha joining 32
Traj31 14 54187895 to 54187951 56 + gene segment T cell receptor alpha joining 31
Traj30 14 54189866 to 54189924 58 + gene segment T cell receptor alpha joining 30
Traj29 14 54190946 to 54191005 59 + gene segment T cell receptor alpha joining 29
Traj28 14 54191661 to 54191725 64 + gene segment T cell receptor alpha joining 28
Tssr125581 14 54192256 to 54192287 31 + TSS region transcription start site region 125581
Tssr125582 14 54192301 to 54192315 14 + TSS region transcription start site region 125582
Traj27 14 54192303 to 54192361 58 + gene segment T cell receptor alpha joining 27
Tssr128545 14 54192478 to 54192482 4 - TSS region transcription start site region 128545
Tssr125583 14 54192711 to 54192722 11 + TSS region transcription start site region 125583
Cia50 14 54192728 to 54192863 135 QTL collagen induced arthritis QTL 50
D14Mit142 14 54192728 to 54192863 135 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 142
Tssr125584 14 54192754 to 54192770 16 + TSS region transcription start site region 125584
Tssr125585 14 54193965 to 54193974 9 + TSS region transcription start site region 125585
Tssr125586 14 54194220 to 54194238 18 + TSS region transcription start site region 125586
Traj26 14 54194490 to 54194549 59 + gene segment T cell receptor alpha joining 26
Tssr125587 14 54194697 to 54194710 13 + TSS region transcription start site region 125587
Traj25 14 54194815 to 54194871 56 + gene segment T cell receptor alpha joining 25
Traj24 14 54195645 to 54195700 55 + gene segment T cell receptor alpha joining 24
Tssr125588 14 54196037 to 54196064 27 + TSS region transcription start site region 125588
Tssr125589 14 54196068 to 54196076 8 + TSS region transcription start site region 125589
Traj23 14 54196081 to 54196140 59 + gene segment T cell receptor alpha joining 23
Traj22 14 54197248 to 54197307 59 + gene segment T cell receptor alpha joining 22
Tssr128546 14 54197878 to 54197885 7 - TSS region transcription start site region 128546
Tssr128547 14 54197908 to 54197918 10 - TSS region transcription start site region 128547
Traj21 14 54198790 to 54198846 56 + gene segment T cell receptor alpha joining 21
Traj20 14 54199441 to 54199498 57 + gene segment T cell receptor alpha joining 20
Tssr125590 14 54199972 to 54199983 11 + TSS region transcription start site region 125590
Traj19 14 54200386 to 54200446 60 + gene segment T cell receptor alpha joining 19
Traj18 14 54200777 to 54200842 65 + gene segment T cell receptor alpha joining 18
Traj17 14 54201775 to 54201837 62 + gene segment T cell receptor alpha joining 17
Traj16 14 54203134 to 54203194 60 + gene segment T cell receptor alpha joining 16
Traj15 14 54204422 to 54204481 59 + gene segment T cell receptor alpha joining 15
Traj14 14 54205111 to 54205144 33 + pseudogenic gene segment T cell receptor alpha joining 14
Traj13 14 54205741 to 54205797 56 + gene segment T cell receptor alpha joining 13
Traj12 14 54206553 to 54206610 57 + gene segment T cell receptor alpha joining 12
Tssr128548 14 54206624 to 54206636 12 - TSS region transcription start site region 128548
Tssr125591 14 54207099 to 54207108 9 + TSS region transcription start site region 125591
Traj11 14 54207139 to 54207197 58 + gene segment T cell receptor alpha joining 11
Tssr125592 14 54207815 to 54207827 12 + TSS region transcription start site region 125592
Tssr125593 14 54208176 to 54208220 44 + TSS region transcription start site region 125593
Traj9 14 54209393 to 54209450 57 + gene segment T cell receptor alpha joining 9
Traj8 14 54209918 to 54209954 36 + pseudogenic gene segment T cell receptor alpha joining 8
Tssr125594 14 54211391 to 54211404 13 + TSS region transcription start site region 125594
Tssr125595 14 54211448 to 54211466 18 + TSS region transcription start site region 125595
Traj7 14 54211470 to 54211528 58 + gene segment T cell receptor alpha joining 7
Traj6 14 54212688 to 54212749 61 + gene segment T cell receptor alpha joining 6
Tssr128549 14 54213723 to 54213729 6 - TSS region transcription start site region 128549
Traj5 14 54213777 to 54213838 61 + gene segment T cell receptor alpha joining 5
Traj4 14 54216291 to 54216353 62 + gene segment T cell receptor alpha joining 4
Traj3 14 54217292 to 54217357 65 + gene segment T cell receptor alpha joining 3
Traj2 14 54217836 to 54217901 65 + gene segment T cell receptor alpha joining 2
Tssr128550 14 54218654 to 54218666 12 - TSS region transcription start site region 128550
Traj1 14 54218814 to 54218842 28 + pseudogenic gene segment T cell receptor alpha joining 1
Tssr125596 14 54218829 to 54218834 5 + TSS region transcription start site region 125596
Tssr125597 14 54218974 to 54218985 11 + TSS region transcription start site region 125597
Tssr125598 14 54219030 to 54219039 9 + TSS region transcription start site region 125598
Trac 14 54220521 to 54224198 3677 + gene segment T cell receptor alpha constant
Tssr125599 14 54220566 to 54220585 19 + TSS region transcription start site region 125599
Tssr125600 14 54220696 to 54220710 14 + TSS region transcription start site region 125600
Tssr125601 14 54222237 to 54222256 19 + TSS region transcription start site region 125601
Tssr125602 14 54222364 to 54222374 10 + TSS region transcription start site region 125602
Tssr128551 14 54222486 to 54222499 13 - TSS region transcription start site region 128551
Tssr125603 14 54222738 to 54222754 16 + TSS region transcription start site region 125603
Tssr125604 14 54222774 to 54222789 15 + TSS region transcription start site region 125604
Tssr125605 14 54222808 to 54222819 11 + TSS region transcription start site region 125605
Tssr125606 14 54222838 to 54222850 12 + TSS region transcription start site region 125606
Tssr125607 14 54223715 to 54223733 18 + TSS region transcription start site region 125607
Tssr125608 14 54223962 to 54223972 10 + TSS region transcription start site region 125608
Tssr125609 14 54224033 to 54224047 14 + TSS region transcription start site region 125609
Tssr128552 14 54225285 to 54225299 14 - TSS region transcription start site region 128552
Tssr125610 14 54225451 to 54225460 9 + TSS region transcription start site region 125610
Tssr125611 14 54225946 to 54225958 12 + TSS region transcription start site region 125611
Tssr125612 14 54226050 to 54226060 10 + TSS region transcription start site region 125612
Tssr125613 14 54226063 to 54226100 37 + TSS region transcription start site region 125613
Tssr128553 14 54227356 to 54227383 27 - TSS region transcription start site region 128553
Tssr125614 14 54227678 to 54227689 11 + TSS region transcription start site region 125614
Cpgi6449 14 54229063 to 54229316 253 CpG island CpG island 6449
Cpgi6450 14 54231249 to 54231457 208 CpG island CpG island 6450
Tssr128554 14 54231428 to 54231443 15 - TSS region transcription start site region 128554
Tssr125615 14 54232243 to 54232249 6 + TSS region transcription start site region 125615