Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:53806594-54116634

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trav17 14 53806639 to 53807115 476 + gene segment T cell receptor alpha variable 17
Trav18 14 53831105 to 53831827 722 + gene segment T cell receptor alpha variable 18
Tssr125503 14 53845263 to 53845276 13 + TSS region transcription start site region 125503
Tssr125504 14 53845307 to 53845321 14 + TSS region transcription start site region 125504
Trav19 14 53845322 to 53845827 505 + gene segment T cell receptor alpha variable 19
Tssr128529 14 53845830 to 53845844 14 - TSS region transcription start site region 128529
Tssr125505 14 53863057 to 53863088 31 + TSS region transcription start site region 125505
Trav20 14 53863110 to 53863661 551 + pseudogenic gene segment T cell receptor alpha variable 20
Tssr128530 14 53863317 to 53863320 3 - TSS region transcription start site region 128530
Tssr125506 14 53875939 to 53875946 7 + TSS region transcription start site region 125506
Tssr125507 14 53875959 to 53875989 30 + TSS region transcription start site region 125507
Tssr125508 14 53875992 to 53876005 13 + TSS region transcription start site region 125508
Trav21-dv12 14 53876016 to 53876752 736 + gene segment T cell receptor alpha variable 21-DV12
Tssr125509 14 53876688 to 53876713 25 + TSS region transcription start site region 125509
Tssr125510 14 53881532 to 53881545 13 + TSS region transcription start site region 125510
Tssr125511 14 53881557 to 53881579 22 + TSS region transcription start site region 125511
Tssr125512 14 53881586 to 53881605 19 + TSS region transcription start site region 125512
Trdv1 14 53881612 to 53882217 605 + gene segment T cell receptor delta variable 1
Gm30392 14 53893586 to 53995588 102002 - lncRNA gene predicted gene, 30392
Tssr125513 14 53902983 to 53902986 3 + TSS region transcription start site region 125513
Gm43647 14 53918327 to 53961515 43188 - antisense lncRNA gene predicted gene 43647
Trav22 14 53926978 to 53927595 617 + pseudogenic gene segment T cell receptor alpha variable 22
Tssr125514 14 53945992 to 53945998 6 + TSS region transcription start site region 125514
Tssr125515 14 53946009 to 53946022 13 + TSS region transcription start site region 125515
Tcrd 14 53946073 to 54159198 213125 + complex/cluster/region T cell receptor delta chain
Trdv2-1 14 53946073 to 53946660 587 + gene segment T cell receptor delta variable 2-1
Gm30333 14 53946675 to 53961515 14840 - lncRNA gene predicted gene, 30333
Tssr125516 14 53960912 to 53960925 13 + TSS region transcription start site region 125516
Tssr125517 14 53960932 to 53960949 17 + TSS region transcription start site region 125517
Tssr125518 14 53960954 to 53960981 27 + TSS region transcription start site region 125518
Tssr125519 14 53960984 to 53960996 12 + TSS region transcription start site region 125519
Trdv2-2 14 53960993 to 53961602 609 + gene segment T cell receptor delta variable 2-2
Tssr128531 14 53961594 to 53961634 40 - TSS region transcription start site region 128531
Trav23 14 53977153 to 53977678 525 + pseudogenic gene segment T cell receptor alpha variable 23
Trdv3 14 54000948 to 54001253 305 + pseudogenic gene segment T cell receptor delta variable 3
Tssr125520 14 54059279 to 54059290 11 + TSS region transcription start site region 125520
Gm30275 14 54067579 to 54125395 57816 - antisense lncRNA gene predicted gene, 30275
Tssr125521 14 54074898 to 54074945 47 + TSS region transcription start site region 125521
Tssr125522 14 54074967 to 54074981 14 + TSS region transcription start site region 125522
Tssr125523 14 54074987 to 54074999 12 + TSS region transcription start site region 125523
Trdv4 14 54075004 to 54075515 511 + gene segment T cell receptor delta variable 4
Tssr125524 14 54075017 to 54075024 7 + TSS region transcription start site region 125524
Tssr128532 14 54075621 to 54075636 15 - TSS region transcription start site region 128532
Tssr125525 14 54075732 to 54075746 14 + TSS region transcription start site region 125525
D14Mit259 14 54109825 to 54109949 124 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 259
Tssr125526 14 54113327 to 54113338 11 + TSS region transcription start site region 125526
Tssr125527 14 54113435 to 54113446 11 + TSS region transcription start site region 125527
Trdd1 14 54113468 to 54113476 8 + gene segment T cell receptor delta diversity 1