Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:53688327-54191515

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43550 14 53694573 to 53694875 302 - pseudogene predicted gene 43550
Trav5-4 14 53704007 to 53704514 507 + gene segment T cell receptor alpha variable 5-4
Trav6-7-dv9 14 53709943 to 53710419 476 + gene segment T cell receptor alpha variable 6-7-DV9
Tssr125494 14 53716680 to 53716706 26 + TSS region transcription start site region 125494
Trav7-6 14 53716760 to 53717291 531 + gene segment T cell receptor alpha variable 7-6
Trav13-3 14 53729558 to 53730074 516 + pseudogenic gene segment T cell receptor alpha variable 13-3
Tssr125495 14 53738303 to 53738307 4 + TSS region transcription start site region 125495
Trav8-2 14 53738375 to 53738838 463 + pseudogenic gene segment T-cell receptor alpha variable 8-2
Trav16 14 53743174 to 53743705 531 + gene segment T cell receptor alpha variable 16
Trav13-4-dv7 14 53757410 to 53757921 511 + gene segment T cell receptor alpha variable 13-4-DV7
Tssr125496 14 53763137 to 53763185 48 + TSS region transcription start site region 125496
Trav14-3 14 53763196 to 53763694 498 + gene segment T cell receptor alpha variable 14-3
Trav15-3 14 53767026 to 53767180 154 + pseudogenic gene segment T cell receptor alpha variable 15-3
Tssr125497 14 53776930 to 53776957 27 + TSS region transcription start site region 125497
Trav3-4 14 53777071 to 53777576 505 + gene segment T cell receptor alpha variable 3-4
Trav12-4 14 53778603 to 53778845 242 + pseudogenic gene segment T cell receptor alpha variable 12-4
B230359F08Rik 14 53795455 to 53795963 508 + protein coding gene RIKEN cDNA B230359F08 gene
Tssr125498 14 53800705 to 53800713 8 + TSS region transcription start site region 125498
Tssr125499 14 53800797 to 53800813 16 + TSS region transcription start site region 125499
Tssr125500 14 53800815 to 53800834 19 + TSS region transcription start site region 125500
Tssr125501 14 53806463 to 53806472 9 + TSS region transcription start site region 125501
Tssr125502 14 53806497 to 53806520 23 + TSS region transcription start site region 125502
Trav17 14 53806639 to 53807115 476 + gene segment T cell receptor alpha variable 17
Trav18 14 53831105 to 53831827 722 + gene segment T cell receptor alpha variable 18
Tssr125503 14 53845263 to 53845276 13 + TSS region transcription start site region 125503
Tssr125504 14 53845307 to 53845321 14 + TSS region transcription start site region 125504
Trav19 14 53845322 to 53845827 505 + gene segment T cell receptor alpha variable 19
Tssr128529 14 53845830 to 53845844 14 - TSS region transcription start site region 128529
Tssr125505 14 53863057 to 53863088 31 + TSS region transcription start site region 125505
Trav20 14 53863110 to 53863661 551 + pseudogenic gene segment T cell receptor alpha variable 20
Tssr128530 14 53863317 to 53863320 3 - TSS region transcription start site region 128530
Tssr125506 14 53875939 to 53875946 7 + TSS region transcription start site region 125506
Tssr125507 14 53875959 to 53875989 30 + TSS region transcription start site region 125507
Tssr125508 14 53875992 to 53876005 13 + TSS region transcription start site region 125508
Trav21-dv12 14 53876016 to 53876752 736 + gene segment T cell receptor alpha variable 21-DV12
Tssr125509 14 53876688 to 53876713 25 + TSS region transcription start site region 125509
Tssr125510 14 53881532 to 53881545 13 + TSS region transcription start site region 125510
Tssr125511 14 53881557 to 53881579 22 + TSS region transcription start site region 125511
Tssr125512 14 53881586 to 53881605 19 + TSS region transcription start site region 125512
Trdv1 14 53881612 to 53882217 605 + gene segment T cell receptor delta variable 1
Gm30392 14 53893586 to 53995588 102002 - lncRNA gene predicted gene, 30392
Tssr125513 14 53902983 to 53902986 3 + TSS region transcription start site region 125513
Gm43647 14 53918327 to 53961515 43188 - antisense lncRNA gene predicted gene 43647
Trav22 14 53926978 to 53927595 617 + pseudogenic gene segment T cell receptor alpha variable 22
Tssr125514 14 53945992 to 53945998 6 + TSS region transcription start site region 125514
Tssr125515 14 53946009 to 53946022 13 + TSS region transcription start site region 125515
Tcrd 14 53946073 to 54159198 213125 + complex/cluster/region T cell receptor delta chain
Trdv2-1 14 53946073 to 53946660 587 + gene segment T cell receptor delta variable 2-1
Gm30333 14 53946675 to 53961515 14840 - lncRNA gene predicted gene, 30333
Tssr125516 14 53960912 to 53960925 13 + TSS region transcription start site region 125516
Tssr125517 14 53960932 to 53960949 17 + TSS region transcription start site region 125517
Tssr125518 14 53960954 to 53960981 27 + TSS region transcription start site region 125518
Tssr125519 14 53960984 to 53960996 12 + TSS region transcription start site region 125519
Trdv2-2 14 53960993 to 53961602 609 + gene segment T cell receptor delta variable 2-2
Tssr128531 14 53961594 to 53961634 40 - TSS region transcription start site region 128531
Trav23 14 53977153 to 53977678 525 + pseudogenic gene segment T cell receptor alpha variable 23
Trdv3 14 54000948 to 54001253 305 + pseudogenic gene segment T cell receptor delta variable 3
Tssr125520 14 54059279 to 54059290 11 + TSS region transcription start site region 125520
Gm30275 14 54067579 to 54125395 57816 - antisense lncRNA gene predicted gene, 30275
Tssr125521 14 54074898 to 54074945 47 + TSS region transcription start site region 125521
Tssr125522 14 54074967 to 54074981 14 + TSS region transcription start site region 125522
Tssr125523 14 54074987 to 54074999 12 + TSS region transcription start site region 125523
Trdv4 14 54075004 to 54075515 511 + gene segment T cell receptor delta variable 4
Tssr125524 14 54075017 to 54075024 7 + TSS region transcription start site region 125524
Tssr128532 14 54075621 to 54075636 15 - TSS region transcription start site region 128532
Tssr125525 14 54075732 to 54075746 14 + TSS region transcription start site region 125525
D14Mit259 14 54109825 to 54109949 124 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 259
Tssr125526 14 54113327 to 54113338 11 + TSS region transcription start site region 125526
Tssr125527 14 54113435 to 54113446 11 + TSS region transcription start site region 125527
Trdd1 14 54113468 to 54113476 8 + gene segment T cell receptor delta diversity 1
Gm23704 14 54117054 to 54117393 339 + unclassified non-coding RNA gene predicted gene, 23704
Tssr125528 14 54120370 to 54120393 23 + TSS region transcription start site region 125528
Tssr125529 14 54121470 to 54121491 21 + TSS region transcription start site region 125529
Tssr125530 14 54121875 to 54121904 29 + TSS region transcription start site region 125530
Tssr125531 14 54121907 to 54121923 16 + TSS region transcription start site region 125531
Tssr125532 14 54121925 to 54121936 11 + TSS region transcription start site region 125532
Tssr125533 14 54122037 to 54122040 3 + TSS region transcription start site region 125533
Tssr125534 14 54122113 to 54122133 20 + TSS region transcription start site region 125534
Tssr125535 14 54122142 to 54122147 5 + TSS region transcription start site region 125535
Tssr125536 14 54122161 to 54122184 23 + TSS region transcription start site region 125536
Tssr125537 14 54122190 to 54122228 38 + TSS region transcription start site region 125537
Trdd2 14 54122226 to 54122241 15 + gene segment T cell receptor delta diversity 2
Tssr125538 14 54122230 to 54122248 18 + TSS region transcription start site region 125538
Tssr125539 14 54123123 to 54123159 36 + TSS region transcription start site region 125539
Trdj1 14 54123138 to 54123188 50 + gene segment T cell receptor delta joining 1
Tssr128533 14 54123584 to 54123630 46 - TSS region transcription start site region 128533
Tssr128534 14 54125413 to 54125425 12 - TSS region transcription start site region 128534
Gm43434 14 54128298 to 54146287 17989 - antisense lncRNA gene predicted gene 43434
Tssr125540 14 54136740 to 54136750 10 + TSS region transcription start site region 125540
Trdj2 14 54136779 to 54136837 58 + gene segment T cell receptor delta joining 2
Tssr128535 14 54138261 to 54138286 25 - TSS region transcription start site region 128535
Tssr125541 14 54138492 to 54138537 45 + TSS region transcription start site region 125541
Trdc 14 54142851 to 54146108 3257 + gene segment T cell receptor delta, constant region
Trdv5 14 54148662 to 54149201 539 - gene segment T cell receptor delta variable 5
Tssr128536 14 54149221 to 54149240 19 - TSS region transcription start site region 128536
Tssr128537 14 54149248 to 54149259 11 - TSS region transcription start site region 128537
Tssr128538 14 54149261 to 54149280 19 - TSS region transcription start site region 128538
Tssr128539 14 54149335 to 54149343 8 - TSS region transcription start site region 128539
Tssr128540 14 54151399 to 54151410 11 - TSS region transcription start site region 128540
Tssr125542 14 54153146 to 54153164 18 + TSS region transcription start site region 125542
Tssr125543 14 54153190 to 54153200 10 + TSS region transcription start site region 125543
Tssr125544 14 54153206 to 54153231 25 + TSS region transcription start site region 125544
Tssr125545 14 54153253 to 54153264 11 + TSS region transcription start site region 125545
Traj61 14 54155005 to 54155076 71 + pseudogenic gene segment T cell receptor alpha joining 61
Traj60 14 54155933 to 54155985 52 + pseudogenic gene segment T cell receptor alpha joining 60
Traj59 14 54156133 to 54156194 61 + gene segment T cell receptor alpha joining 59
Tssr125546 14 54157267 to 54157274 7 + TSS region transcription start site region 125546
Traj58 14 54157280 to 54157342 62 + gene segment T cell receptor alpha joining 58
Tssr125547 14 54158456 to 54158467 11 + TSS region transcription start site region 125547
Traj57 14 54158507 to 54158569 62 + gene segment T cell receptor alpha joining 57
Tssr125548 14 54159028 to 54159035 7 + TSS region transcription start site region 125548
Traj56 14 54159263 to 54159325 62 + gene segment T cell receptor alpha joining 56
Traj55 14 54161439 to 54161501 62 + pseudogenic gene segment T cell receptor alpha joining 55
Traj54 14 54161990 to 54162043 53 + pseudogenic gene segment T cell receptor alpha joining 54
Traj53 14 54162644 to 54162709 65 + gene segment T cell receptor alpha joining 53
Traj52 14 54165316 to 54165381 65 + gene segment T cell receptor alpha joining 52
Traj51 14 54166239 to 54166281 42 + pseudogenic gene segment T cell receptor alpha joining 51
Tssr125549 14 54166521 to 54166546 25 + TSS region transcription start site region 125549
Tssr125550 14 54166549 to 54166576 27 + TSS region transcription start site region 125550
Traj50 14 54167590 to 54167652 62 + gene segment T cell receptor alpha joining 50
Tssr128541 14 54168016 to 54168019 3 - TSS region transcription start site region 128541
Tssr125551 14 54168550 to 54168561 11 + TSS region transcription start site region 125551
Tssr125552 14 54168596 to 54168605 9 + TSS region transcription start site region 125552
Tssr125553 14 54168642 to 54168653 11 + TSS region transcription start site region 125553
Tssr125554 14 54168655 to 54168683 28 + TSS region transcription start site region 125554
Traj49 14 54168686 to 54168744 58 + gene segment T cell receptor alpha joining 49
Traj48 14 54169808 to 54169868 60 + gene segment T cell receptor alpha joining 48
Tssr128542 14 54171350 to 54171356 6 - TSS region transcription start site region 128542
Tssr125555 14 54171575 to 54171582 7 + TSS region transcription start site region 125555
Tssr125556 14 54171800 to 54171811 11 + TSS region transcription start site region 125556
Traj47 14 54171802 to 54171856 54 + gene segment T cell receptor alpha joining 47
Tssr125557 14 54172109 to 54172112 3 + TSS region transcription start site region 125557
Traj46 14 54172338 to 54172398 60 + gene segment T cell receptor alpha joining 46
Traj45 14 54172831 to 54172890 59 + gene segment T cell receptor alpha joining 45
Tssr125558 14 54173527 to 54173534 7 + TSS region transcription start site region 125558
Tssr125559 14 54173538 to 54173554 16 + TSS region transcription start site region 125559
Tssr125560 14 54173558 to 54173590 32 + TSS region transcription start site region 125560
Tssr125561 14 54173597 to 54173604 7 + TSS region transcription start site region 125561
Traj44 14 54173690 to 54173750 60 + gene segment T cell receptor alpha joining 44
Tssr125562 14 54174398 to 54174401 3 + TSS region transcription start site region 125562
Tssr125563 14 54174600 to 54174626 26 + TSS region transcription start site region 125563
Traj43 14 54174742 to 54174798 56 + gene segment T cell receptor alpha joining 43
Tssr125564 14 54174865 to 54174879 14 + TSS region transcription start site region 125564
Tssr125565 14 54174954 to 54174968 14 + TSS region transcription start site region 125565
Traj42 14 54175773 to 54175836 63 + gene segment T cell receptor alpha joining 42
Tssr125566 14 54175974 to 54175982 8 + TSS region transcription start site region 125566
Tssr125567 14 54176208 to 54176219 11 + TSS region transcription start site region 125567
Tssr125568 14 54176227 to 54176236 9 + TSS region transcription start site region 125568
Tssr125569 14 54176253 to 54176256 3 + TSS region transcription start site region 125569
Tssr125570 14 54176271 to 54176285 14 + TSS region transcription start site region 125570
Traj41 14 54176271 to 54176325 54 + gene segment T cell receptor alpha joining 41
Tssr128543 14 54176657 to 54176662 5 - TSS region transcription start site region 128543
Traj40 14 54177921 to 54177981 60 + gene segment T cell receptor alpha joining 40
Tssr125571 14 54179524 to 54179530 6 + TSS region transcription start site region 125571
Tssr125572 14 54179647 to 54179660 13 + TSS region transcription start site region 125572
Tssr125573 14 54179712 to 54179722 10 + TSS region transcription start site region 125573
Traj39 14 54179962 to 54180024 62 + gene segment T cell receptor alpha joining 39
Traj38 14 54180574 to 54180635 61 + gene segment T cell receptor alpha joining 38
Tssr128544 14 54181230 to 54181249 19 - TSS region transcription start site region 128544
Tssr125574 14 54181421 to 54181438 17 + TSS region transcription start site region 125574
Tssr125575 14 54181484 to 54181511 27 + TSS region transcription start site region 125575
Tssr125576 14 54181516 to 54181548 32 + TSS region transcription start site region 125576
Traj37 14 54181518 to 54181577 59 + gene segment T cell receptor alpha joining 37
Tssr125577 14 54181560 to 54181567 7 + TSS region transcription start site region 125577
Tssr125578 14 54181630 to 54181633 3 + TSS region transcription start site region 125578
Traj36 14 54182402 to 54182464 62 + pseudogenic gene segment T cell receptor alpha joining 36
Traj35 14 54183774 to 54183838 64 + gene segment T cell receptor alpha joining 35
Traj34 14 54184699 to 54184756 57 + gene segment T cell receptor alpha joining 34
Traj33 14 54185358 to 54185414 56 + gene segment T cell receptor alpha joining 33
Tssr125579 14 54185846 to 54185851 5 + TSS region transcription start site region 125579
Tssr125580 14 54185990 to 54186004 14 + TSS region transcription start site region 125580
Traj32 14 54186101 to 54186166 65 + gene segment T cell receptor alpha joining 32
Traj31 14 54187895 to 54187951 56 + gene segment T cell receptor alpha joining 31
Traj30 14 54189866 to 54189924 58 + gene segment T cell receptor alpha joining 30
Traj29 14 54190946 to 54191005 59 + gene segment T cell receptor alpha joining 29