Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:52975402-53475676

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trav9d-4 14 52983456 to 52983770 314 + gene segment T cell receptor alpha variable 9D-4
Trav4d-4 14 52990889 to 52991389 500 + gene segment T cell receptor alpha variable 4D-4
Gm43104 14 52992957 to 52993267 310 - pseudogene predicted gene 43104
Trav5d-4 14 53001713 to 53002231 518 + gene segment T cell receptor alpha variable 5D-4
Trav6d-7 14 53007632 to 53008098 466 + gene segment T cell receptor alpha variable 6D-7
C920008G01Rik 14 53020459 to 53020991 532 + unclassified gene RIKEN cDNA C920008G01 gene
Gm30214 14 53032417 to 53039466 7049 - antisense lncRNA gene predicted gene, 30214
Trav13d-3 14 53032902 to 53033419 517 + gene segment T cell receptor alpha variable 13D-3
Tssr125474 14 53042353 to 53042360 7 + TSS region transcription start site region 125474
Trav8d-2 14 53042428 to 53042891 463 + gene segment T cell receptor alpha variable 8D-2
Trav16d-dv11 14 53047287 to 53047821 534 + gene segment T cell receptor alpha variable 16D-DV11
Trav13d-4 14 53072763 to 53073274 511 + gene segment T cell receptor alpha variable 13D-4
Tcra-V2 14 53077312 to 53369494 292182 gene segment T cell receptor alpha, variable 2
Tssr125475 14 53078487 to 53078516 29 + TSS region transcription start site region 125475
Trav14d-3-dv8 14 53078547 to 53079045 498 + gene segment T cell receptor alpha variable 14D-3-DV8
Trav15d-3 14 53082354 to 53082520 166 + pseudogenic gene segment T cell receptor alpha variable 15D-3
Trav7n-4 14 53091346 to 53091875 529 + gene segment T cell receptor alpha variable 7N-4
Trav9n-1 14 53101801 to 53102265 464 + gene segment T cell receptor alpha variable 9N-1
Trav6n-5 14 53104871 to 53105344 473 + gene segment T cell receptor alpha variable 6N-5
Trav10n 14 53122114 to 53122610 496 + gene segment T cell receptor alpha variable 10N
Trav6n-6 14 53132700 to 53133137 437 + gene segment T cell receptor alpha variable 6N-6
Trav11n 14 53135122 to 53135678 556 + pseudogenic gene segment T cell receptor alpha variable 11N
Trav7n-5 14 53146922 to 53147448 526 + gene segment T cell receptor alpha variable 7N-5
Trav12n-1 14 53155607 to 53156088 481 + gene segment T cell receptor alpha variable 12N-1
Trav13n-1 14 53162399 to 53162910 511 + gene segment T cell receptor alpha variable 13N-1
Trav14n-1 14 53166677 to 53167178 501 + gene segment T cell receptor alpha variable 14N-1
Gm6755 14 53172727 to 53173590 863 - pseudogene predicted gene 6755
Trav15n-1 14 53174325 to 53174896 571 + gene segment T cell receptor alpha variable 15N-1
Trav3n-2 14 53198525 to 53199018 493 + gene segment T cell receptor alpha variable 3N-2
Trav9n-2 14 53203122 to 53203544 422 + gene segment T cell receptor alpha variable 9N-2
Trav4n-3 14 53210906 to 53211407 501 + gene segment T cell receptor alpha variable 4N-3
Rps19-ps1 14 53213730 to 53214167 437 + pseudogene ribosomal protein S19, pseudogene 1
Trav5n-2 14 53225402 to 53225676 274 + pseudogenic gene segment T cell receptor alpha variable 5N-2
Trav12n-2 14 53226884 to 53227400 516 + gene segment T cell receptor alpha variable 12N-2
Trav9n-3 14 53231668 to 53232102 434 + gene segment T cell receptor alpha variable 9N-3
Trav5n-3 14 53239284 to 53239553 269 + pseudogenic gene segment T cell receptor alpha variable 5N-3
Trav12n-3 14 53240751 to 53241244 493 + gene segment T cell receptor alpha variable 12N-3
Trav13n-2 14 53253792 to 53254317 525 + gene segment T cell receptor alpha variable 13N-2
Trav14n-2 14 53259678 to 53260179 501 + gene segment T cell receptor alpha variable 14N-2
Trav15n-2 14 53267963 to 53268535 572 + gene segment T cell receptor alpha variable 15N-2
Gm3922 14 53281075 to 53281509 434 - pseudogene predicted gene 3922
Trav3n-3 14 53283669 to 53284175 506 + gene segment T cell receptor alpha variable 3N-3
Trav9n-4 14 53294596 to 53295030 434 + gene segment T cell receptor alpha variable 9N-4
Trav4n-4 14 53302059 to 53302559 500 + gene segment T cell receptor alpha variable 4N-4
Trav5n-4 14 53312904 to 53313422 518 + gene segment T cell receptor alpha variable 5N-4
Trav6n-7 14 53318818 to 53319284 466 + gene segment T cell receptor alpha variable 6N-7
Trav7n-6 14 53324676 to 53325208 532 + gene segment T cell receptor alpha variable 7N-6
Gm43650 14 53336637 to 53343922 7285 - antisense lncRNA gene predicted gene 43650
Trav13n-3 14 53337122 to 53337639 517 + gene segment T cell receptor alpha variable 13N-3
Tssr125476 14 53345889 to 53345893 4 + TSS region transcription start site region 125476
Trav8n-2 14 53345961 to 53346424 463 + gene segment T cell receptor alpha variable 8n-2
Trav16n 14 53351090 to 53351621 531 + gene segment T cell receptor alpha variable 16n
Trav13n-4 14 53362368 to 53364106 1738 + gene segment T cell receptor alpha variable 13N-4
D14Mit21 14 53368766 to 53369012 246 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 21
Tssr125477 14 53370013 to 53370025 12 + TSS region transcription start site region 125477
Trav14n-3 14 53370077 to 53370575 498 + gene segment T cell receptor alpha variable 14N-3
Trav15n-3 14 53375112 to 53375279 167 + pseudogenic gene segment T cell receptor alpha variable 15N-3
Trav7-2 14 53390633 to 53391136 503 + gene segment T cell receptor alpha variable 7-2
Tssr125478 14 53418352 to 53418393 41 + TSS region transcription start site region 125478
Trav4-2 14 53418388 to 53418873 485 + gene segment T cell receptor alpha variable 4-2
Tssr125479 14 53428708 to 53428721 13 + TSS region transcription start site region 125479
Trav6-3 14 53428761 to 53430377 1616 + gene segment T cell receptor alpha variable 6-3
Tssr125480 14 53443243 to 53443262 19 + TSS region transcription start site region 125480
Trav7-3 14 53443314 to 53443839 525 + gene segment T cell receptor alpha variable 7-3
Trav6-4 14 53454327 to 53454784 457 + gene segment T cell receptor alpha variable 6-4
Trav7-4 14 53461209 to 53461738 529 + gene segment T cell receptor alpha variable 7-4
Gm18711 14 53466079 to 53466828 749 + pseudogene predicted gene, 18711
Trav8-1 14 53469756 to 53470231 475 + gene segment T cell receptor alpha variable 8-1