Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:52570917-52851402

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr125465 14 52580584 to 52580590 6 + TSS region transcription start site region 125465
Trav3-1 14 52580762 to 52581213 451 + gene segment T cell receptor alpha variable 3-1
Trav4-1 14 52607307 to 52607804 497 + pseudogenic gene segment T cell receptor alpha variable 4-1
Tssr4407 14 52610356 to 52610364 8 + TSS region transcription start site region 4407
Tssr125466 14 52622496 to 52622518 22 + TSS region transcription start site region 125466
Tssr125467 14 52622524 to 52622535 11 + TSS region transcription start site region 125467
Trav5-1 14 52622566 to 52623082 516 + gene segment T cell receptor alpha variable 5-1
Tssr125468 14 52622573 to 52622586 13 + TSS region transcription start site region 125468
Tssr4408 14 52623833 to 52623834 1 + TSS region transcription start site region 4408
Tssr125469 14 52638452 to 52638472 20 + TSS region transcription start site region 125469
Trav6-1 14 52638515 to 52638962 447 + gene segment T cell receptor alpha variable 6-1
Gm42988 14 52639531 to 52639755 224 + pseudogene predicted gene 42988
Tssr125470 14 52654658 to 52654674 16 + TSS region transcription start site region 125470
Trav7-1 14 52654817 to 52655328 511 + gene segment T cell receptor alpha variable 7-1
Tssr125471 14 52667356 to 52667383 27 + TSS region transcription start site region 125471
Trav6-2 14 52667411 to 52667864 453 + gene segment T cell receptor alpha variable 6-2
Trav7d-2 14 52683964 to 52684472 508 + gene segment T cell receptor alpha variable 7D-2
Trav4d-2 14 52710917 to 52711402 485 + pseudogenic gene segment T cell receptor alpha variable 4D-2
Trav6d-3 14 52725308 to 52726919 1611 + gene segment T cell receptor alpha variable 6D-3
Trav7d-3 14 52744314 to 52744838 524 + gene segment T cell receptor alpha variable 7D-3
Trav6d-4 14 52753398 to 52753846 448 + gene segment T cell receptor alpha variable 6D-4
Trav7d-4 14 52769863 to 52770392 529 + gene segment T cell receptor alpha variable 7D-4
Gm5408 14 52774869 to 52775615 746 + pseudogene predicted pseudogene 5408
Trav8d-1 14 52778510 to 52778995 485 + gene segment T cell receptor alpha variable 8D-1
Trav9d-1 14 52792316 to 52792776 460 + gene segment T cell receptor alpha variable 9D-1
Tssr125472 14 52795083 to 52795094 11 + TSS region transcription start site region 125472
Tssr125473 14 52795119 to 52795126 7 + TSS region transcription start site region 125473
Trav6d-5 14 52795165 to 52795633 468 + gene segment T cell receptor alpha variable 6D-5
Trav10d 14 52810997 to 52811496 499 + gene segment T cell receptor alpha variable 10D
Trav6d-6 14 52821922 to 52822359 437 + gene segment T cell receptor alpha variable 6D-6
Trav11d 14 52824357 to 52824912 555 + gene segment T cell receptor alpha variable 11D
Trav7d-5 14 52835861 to 52836387 526 + gene segment T cell receptor alpha variable 7D-5
Trav12d-1 14 52844560 to 52845041 481 + gene segment T cell receptor alpha variable 12D-1
Trav13d-1 14 52851355 to 52851866 511 + gene segment T cell receptor alpha variable 13D-1