Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:52315119-53275126

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sall2 14 52311177 to 52328670 17493 - protein coding gene spalt like transcription factor 2
Cpgi6447 14 52315562 to 52316383 821 CpG island CpG island 6447
Tssr128518 14 52316113 to 52316142 29 - TSS region transcription start site region 128518
Tssr128519 14 52316156 to 52316167 11 - TSS region transcription start site region 128519
Tssr128520 14 52316185 to 52316199 14 - TSS region transcription start site region 128520
Tssr128521 14 52316201 to 52316253 52 - TSS region transcription start site region 128521
Tssr128522 14 52316307 to 52316324 17 - TSS region transcription start site region 128522
Tssr128523 14 52316333 to 52316344 11 - TSS region transcription start site region 128523
Tssr128524 14 52316374 to 52316382 8 - TSS region transcription start site region 128524
Cpgi6448 14 52328090 to 52328351 261 CpG island CpG island 6448
Tssr125460 14 52328107 to 52328112 5 + TSS region transcription start site region 125460
Tssr128525 14 52328358 to 52328370 12 - TSS region transcription start site region 128525
Tssr128526 14 52328449 to 52328473 24 - TSS region transcription start site region 128526
Gm26328 14 52342777 to 52342883 106 + snRNA gene predicted gene, 26328
Olfr1513 14 52349103 to 52350044 941 - protein coding gene olfactory receptor 1513
Gm4742 14 52368918 to 52369688 770 - pseudogene predicted gene 4742
Tssr128527 14 52369685 to 52369731 46 - TSS region transcription start site region 128527
Olfr1512 14 52372110 to 52373051 941 - protein coding gene olfactory receptor 1512
Gm37504 14 52373153 to 52375526 2373 - unclassified gene predicted gene, 37504
Olfr1511 14 52389815 to 52390771 956 - protein coding gene olfactory receptor 1511
Gm41151 14 52393269 to 52420501 27232 + lncRNA gene predicted gene, 41151
Olfr1510 14 52409889 to 52410927 1038 - protein coding gene olfactory receptor 1510
Tssr128528 14 52417306 to 52417307 1 - TSS region transcription start site region 128528
Gm43250 14 52420556 to 52420828 272 + pseudogene predicted gene 43250
Tssr125461 14 52427931 to 52427952 21 + TSS region transcription start site region 125461
Tcra 14 52427967 to 54224198 1796231 + complex/cluster/region T cell receptor alpha chain
Trav1 14 52427967 to 52428876 909 + gene segment T cell receptor alpha variable 1
Tssr125462 14 52437078 to 52437087 9 + TSS region transcription start site region 125462
Tssr125463 14 52437107 to 52437116 9 + TSS region transcription start site region 125463
Olfr1509 14 52450393 to 52451402 1009 + protein coding gene olfactory receptor 1509
Olfr1508 14 52462721 to 52467461 4740 - protein coding gene olfactory receptor 1508
Gm43512 14 52482885 to 52483060 175 - pseudogene predicted gene 43512
Olfr1507 14 52489935 to 52495695 5760 - protein coding gene olfactory receptor 1507
Gm9537 14 52508286 to 52518788 10502 + pseudogene predicted gene 9537
Gm36382 14 52508542 to 52509082 540 - pseudogene predicted gene, 36382
Gm7122 14 52538652 to 52540876 2224 + pseudogene predicted pseudogene 7122
Gm36448 14 52538652 to 52540876 2224 - pseudogene predicted gene, 36448
Tssr125464 14 52567182 to 52567203 21 + TSS region transcription start site region 125464
Trav2 14 52567293 to 52568053 760 + gene segment T cell receptor alpha variable 2
Tssr125465 14 52580584 to 52580590 6 + TSS region transcription start site region 125465
Trav3-1 14 52580762 to 52581213 451 + gene segment T cell receptor alpha variable 3-1
Trav4-1 14 52607307 to 52607804 497 + pseudogenic gene segment T cell receptor alpha variable 4-1
Tssr4407 14 52610356 to 52610364 8 + TSS region transcription start site region 4407
Tssr125466 14 52622496 to 52622518 22 + TSS region transcription start site region 125466
Tssr125467 14 52622524 to 52622535 11 + TSS region transcription start site region 125467
Trav5-1 14 52622566 to 52623082 516 + gene segment T cell receptor alpha variable 5-1
Tssr125468 14 52622573 to 52622586 13 + TSS region transcription start site region 125468
Tssr4408 14 52623833 to 52623834 1 + TSS region transcription start site region 4408
Tssr125469 14 52638452 to 52638472 20 + TSS region transcription start site region 125469
Trav6-1 14 52638515 to 52638962 447 + gene segment T cell receptor alpha variable 6-1
Gm42988 14 52639531 to 52639755 224 + pseudogene predicted gene 42988
Tssr125470 14 52654658 to 52654674 16 + TSS region transcription start site region 125470
Trav7-1 14 52654817 to 52655328 511 + gene segment T cell receptor alpha variable 7-1
Tssr125471 14 52667356 to 52667383 27 + TSS region transcription start site region 125471
Trav6-2 14 52667411 to 52667864 453 + gene segment T cell receptor alpha variable 6-2
Trav7d-2 14 52683964 to 52684472 508 + gene segment T cell receptor alpha variable 7D-2
Trav4d-2 14 52710917 to 52711402 485 + pseudogenic gene segment T cell receptor alpha variable 4D-2
Trav6d-3 14 52725308 to 52726919 1611 + gene segment T cell receptor alpha variable 6D-3
Trav7d-3 14 52744314 to 52744838 524 + gene segment T cell receptor alpha variable 7D-3
Trav6d-4 14 52753398 to 52753846 448 + gene segment T cell receptor alpha variable 6D-4
Trav7d-4 14 52769863 to 52770392 529 + gene segment T cell receptor alpha variable 7D-4
Gm5408 14 52774869 to 52775615 746 + pseudogene predicted pseudogene 5408
Trav8d-1 14 52778510 to 52778995 485 + gene segment T cell receptor alpha variable 8D-1
Trav9d-1 14 52792316 to 52792776 460 + gene segment T cell receptor alpha variable 9D-1
Tssr125472 14 52795083 to 52795094 11 + TSS region transcription start site region 125472
Tssr125473 14 52795119 to 52795126 7 + TSS region transcription start site region 125473
Trav6d-5 14 52795165 to 52795633 468 + gene segment T cell receptor alpha variable 6D-5
Trav10d 14 52810997 to 52811496 499 + gene segment T cell receptor alpha variable 10D
Trav6d-6 14 52821922 to 52822359 437 + gene segment T cell receptor alpha variable 6D-6
Trav11d 14 52824357 to 52824912 555 + gene segment T cell receptor alpha variable 11D
Trav7d-5 14 52835861 to 52836387 526 + gene segment T cell receptor alpha variable 7D-5
Trav12d-1 14 52844560 to 52845041 481 + gene segment T cell receptor alpha variable 12D-1
Trav13d-1 14 52851355 to 52851866 511 + gene segment T cell receptor alpha variable 13D-1
Trav14d-1 14 52855665 to 52856166 501 + gene segment T cell receptor alpha variable 14D-1
Gm6740 14 52860999 to 52862750 1751 - pseudogene predicted gene 6740
Trav15d-1-dv6d-1 14 52863365 to 52863933 568 + gene segment T cell receptor alpha variable 15D-1-DV6D-1
Trav3d-2 14 52887587 to 52888080 493 + gene segment T cell receptor alpha variable 3D-2
Trav9d-2 14 52892186 to 52892618 432 + gene segment T cell receptor alpha variable 9D-2
Trav4d-3 14 52899972 to 52900470 498 + gene segment T cell receptor alpha variable 4D-3
Rps19-ps2 14 52902793 to 52903230 437 + pseudogene ribosomal protein S19, pseudogene 2
Trav5d-2 14 52914428 to 52914702 274 + pseudogenic gene segment T cell receptor alpha variable 5D-2
Trav12d-2 14 52915915 to 52916426 511 + gene segment T cell receptor alpha variable 12D-2
Trav9d-3 14 52920678 to 52921110 432 + gene segment T cell receptor alpha variable 9D-3
Trav5d-3 14 52928320 to 52928532 212 + pseudogenic gene segment T cell receptor alpha variable 5D-3
Trav12d-3 14 52929789 to 52930282 493 + gene segment T cell receptor alpha variable 12D-3
Trav13d-2 14 52942764 to 52943289 525 + gene segment T cell receptor alpha variable 13D-2
Trav14d-2 14 52948668 to 52949169 501 + gene segment T cell receptor alpha variable 14D-2
Trav15d-2-dv6d-2 14 52956828 to 52957400 572 + gene segment T cell receptor alpha variable 15D-2-DV6D-2
Gm8704 14 52969940 to 52970374 434 - pseudogene predicted gene 8704
Trav3d-3 14 52972532 to 52973038 506 + gene segment T cell receptor alpha variable 3D-3
Trav9d-4 14 52983456 to 52983770 314 + gene segment T cell receptor alpha variable 9D-4
Trav4d-4 14 52990889 to 52991389 500 + gene segment T cell receptor alpha variable 4D-4
Gm43104 14 52992957 to 52993267 310 - pseudogene predicted gene 43104
Trav5d-4 14 53001713 to 53002231 518 + gene segment T cell receptor alpha variable 5D-4
Trav6d-7 14 53007632 to 53008098 466 + gene segment T cell receptor alpha variable 6D-7
C920008G01Rik 14 53020459 to 53020991 532 + unclassified gene RIKEN cDNA C920008G01 gene
Gm30214 14 53032417 to 53039466 7049 - antisense lncRNA gene predicted gene, 30214
Trav13d-3 14 53032902 to 53033419 517 + gene segment T cell receptor alpha variable 13D-3
Tssr125474 14 53042353 to 53042360 7 + TSS region transcription start site region 125474
Trav8d-2 14 53042428 to 53042891 463 + gene segment T cell receptor alpha variable 8D-2
Trav16d-dv11 14 53047287 to 53047821 534 + gene segment T cell receptor alpha variable 16D-DV11
Trav13d-4 14 53072763 to 53073274 511 + gene segment T cell receptor alpha variable 13D-4
Tcra-V2 14 53077312 to 53369494 292182 gene segment T cell receptor alpha, variable 2
Tssr125475 14 53078487 to 53078516 29 + TSS region transcription start site region 125475
Trav14d-3-dv8 14 53078547 to 53079045 498 + gene segment T cell receptor alpha variable 14D-3-DV8
Trav15d-3 14 53082354 to 53082520 166 + pseudogenic gene segment T cell receptor alpha variable 15D-3
Trav7n-4 14 53091346 to 53091875 529 + gene segment T cell receptor alpha variable 7N-4
Trav9n-1 14 53101801 to 53102265 464 + gene segment T cell receptor alpha variable 9N-1
Trav6n-5 14 53104871 to 53105344 473 + gene segment T cell receptor alpha variable 6N-5
Trav10n 14 53122114 to 53122610 496 + gene segment T cell receptor alpha variable 10N
Trav6n-6 14 53132700 to 53133137 437 + gene segment T cell receptor alpha variable 6N-6
Trav11n 14 53135122 to 53135678 556 + pseudogenic gene segment T cell receptor alpha variable 11N
Trav7n-5 14 53146922 to 53147448 526 + gene segment T cell receptor alpha variable 7N-5
Trav12n-1 14 53155607 to 53156088 481 + gene segment T cell receptor alpha variable 12N-1
Trav13n-1 14 53162399 to 53162910 511 + gene segment T cell receptor alpha variable 13N-1
Trav14n-1 14 53166677 to 53167178 501 + gene segment T cell receptor alpha variable 14N-1
Gm6755 14 53172727 to 53173590 863 - pseudogene predicted gene 6755
Trav15n-1 14 53174325 to 53174896 571 + gene segment T cell receptor alpha variable 15N-1
Trav3n-2 14 53198525 to 53199018 493 + gene segment T cell receptor alpha variable 3N-2
Trav9n-2 14 53203122 to 53203544 422 + gene segment T cell receptor alpha variable 9N-2
Trav4n-3 14 53210906 to 53211407 501 + gene segment T cell receptor alpha variable 4N-3
Rps19-ps1 14 53213730 to 53214167 437 + pseudogene ribosomal protein S19, pseudogene 1
Trav5n-2 14 53225402 to 53225676 274 + pseudogenic gene segment T cell receptor alpha variable 5N-2
Trav12n-2 14 53226884 to 53227400 516 + gene segment T cell receptor alpha variable 12N-2
Trav9n-3 14 53231668 to 53232102 434 + gene segment T cell receptor alpha variable 9N-3
Trav5n-3 14 53239284 to 53239553 269 + pseudogenic gene segment T cell receptor alpha variable 5N-3
Trav12n-3 14 53240751 to 53241244 493 + gene segment T cell receptor alpha variable 12N-3
Trav13n-2 14 53253792 to 53254317 525 + gene segment T cell receptor alpha variable 13N-2
Trav14n-2 14 53259678 to 53260179 501 + gene segment T cell receptor alpha variable 14N-2
Trav15n-2 14 53267963 to 53268535 572 + gene segment T cell receptor alpha variable 15N-2