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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:52115356-53105364

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpgrip1 14 52110704 to 52163546 52842 + protein coding gene retinitis pigmentosa GTPase regulator interacting protein 1
Cpgi6440 14 52119061 to 52119572 511 CpG island CpG island 6440
Tssr125450 14 52136463 to 52136475 12 + TSS region transcription start site region 125450
Tssr125451 14 52136477 to 52136507 30 + TSS region transcription start site region 125451
Tssr125452 14 52136526 to 52136540 14 + TSS region transcription start site region 125452
Tssr125453 14 52136556 to 52136581 25 + TSS region transcription start site region 125453
Tssr125454 14 52140987 to 52141008 21 + TSS region transcription start site region 125454
Tssr125455 14 52141046 to 52141066 20 + TSS region transcription start site region 125455
Gm18976 14 52143574 to 52144142 568 - pseudogene predicted gene, 18976
Supt16 14 52160419 to 52197239 36820 - protein coding gene suppressor of Ty 16
Tssr128495 14 52160925 to 52160929 4 - TSS region transcription start site region 128495
Tssr128496 14 52175281 to 52175285 4 - TSS region transcription start site region 128496
D14Mit233 14 52175947 to 52176146 199 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology 233
D14Dcr2 14 52176043 to 52176140 97 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 2
Tssr128497 14 52180172 to 52180189 17 - TSS region transcription start site region 128497
Tssr128498 14 52180214 to 52180237 23 - TSS region transcription start site region 128498
Tssr128499 14 52180239 to 52180252 13 - TSS region transcription start site region 128499
Cpgi6441 14 52196521 to 52197724 1203 CpG island CpG island 6441
Tssr128500 14 52197150 to 52197173 23 - TSS region transcription start site region 128500
Tssr128501 14 52197182 to 52197207 25 - TSS region transcription start site region 128501
Tssr128502 14 52197216 to 52197267 51 - TSS region transcription start site region 128502
Tssr128503 14 52197405 to 52197465 60 - TSS region transcription start site region 128503
Gm26590 14 52197502 to 52213852 16350 + antisense lncRNA gene predicted gene, 26590
Tssr125456 14 52197511 to 52197518 7 + TSS region transcription start site region 125456
Chd8 14 52198151 to 52257780 59629 - protein coding gene chromodomain helicase DNA binding protein 8
Snord8 14 52209786 to 52209884 98 - snoRNA gene small nucleolar RNA, C/D box 8
Tssr128504 14 52235284 to 52235295 11 - TSS region transcription start site region 128504
Tssr128505 14 52237770 to 52237792 22 - TSS region transcription start site region 128505
Cpgi6442 14 52244158 to 52244747 589 CpG island CpG island 6442
Tssr128506 14 52244451 to 52244523 72 - TSS region transcription start site region 128506
Tssr128507 14 52256332 to 52256339 7 - TSS region transcription start site region 128507
Cpgi6443 14 52257354 to 52258120 766 CpG island CpG island 6443
Tssr128508 14 52257697 to 52257784 87 - TSS region transcription start site region 128508
Tssr128509 14 52257799 to 52257810 11 - TSS region transcription start site region 128509
Gm43766 14 52258811 to 52264227 5416 + unclassified gene predicted gene 43766
Rab2b 14 52261759 to 52279395 17636 - protein coding gene RAB2B, member RAS oncogene family
Tssr128510 14 52262870 to 52262898 28 - TSS region transcription start site region 128510
Tssr128511 14 52269174 to 52269195 21 - TSS region transcription start site region 128511
Gm23758 14 52276531 to 52276620 89 + snoRNA gene predicted gene, 23758
Cpgi6444 14 52278817 to 52280009 1192 CpG island CpG island 6444
Tssr128512 14 52279023 to 52279038 15 - TSS region transcription start site region 128512
Tssr125457 14 52279132 to 52279188 56 + TSS region transcription start site region 125457
Tox4 14 52279146 to 52295509 16363 + protein coding gene TOX high mobility group box family member 4
Tssr128513 14 52279238 to 52279339 101 - TSS region transcription start site region 128513
Tssr128514 14 52279346 to 52279359 13 - TSS region transcription start site region 128514
Tssr125458 14 52279581 to 52279630 49 + TSS region transcription start site region 125458
Mettl3 14 52294841 to 52305128 10287 - protein coding gene methyltransferase like 3
Tssr128515 14 52296431 to 52296435 4 - TSS region transcription start site region 128515
Cpgi6445 14 52304545 to 52305363 818 CpG island CpG island 6445
Tssr125459 14 52304892 to 52304917 25 + TSS region transcription start site region 125459
Tssr128516 14 52305056 to 52305130 74 - TSS region transcription start site region 128516
Sall2 14 52311177 to 52328670 17493 - protein coding gene spalt like transcription factor 2
Cpgi6446 14 52314401 to 52314598 197 CpG island CpG island 6446
Tssr128517 14 52314775 to 52314784 9 - TSS region transcription start site region 128517
Cpgi6447 14 52315562 to 52316383 821 CpG island CpG island 6447
Tssr128518 14 52316113 to 52316142 29 - TSS region transcription start site region 128518
Tssr128519 14 52316156 to 52316167 11 - TSS region transcription start site region 128519
Tssr128520 14 52316185 to 52316199 14 - TSS region transcription start site region 128520
Tssr128521 14 52316201 to 52316253 52 - TSS region transcription start site region 128521
Tssr128522 14 52316307 to 52316324 17 - TSS region transcription start site region 128522
Tssr128523 14 52316333 to 52316344 11 - TSS region transcription start site region 128523
Tssr128524 14 52316374 to 52316382 8 - TSS region transcription start site region 128524
Cpgi6448 14 52328090 to 52328351 261 CpG island CpG island 6448
Tssr125460 14 52328107 to 52328112 5 + TSS region transcription start site region 125460
Tssr128525 14 52328358 to 52328370 12 - TSS region transcription start site region 128525
Tssr128526 14 52328449 to 52328473 24 - TSS region transcription start site region 128526
Gm26328 14 52342777 to 52342883 106 + snRNA gene predicted gene, 26328
Olfr1513 14 52349103 to 52350044 941 - protein coding gene olfactory receptor 1513
Gm4742 14 52368918 to 52369688 770 - pseudogene predicted gene 4742
Tssr128527 14 52369685 to 52369731 46 - TSS region transcription start site region 128527
Olfr1512 14 52372110 to 52373051 941 - protein coding gene olfactory receptor 1512
Gm37504 14 52373153 to 52375526 2373 - unclassified gene predicted gene, 37504
Olfr1511 14 52389815 to 52390771 956 - protein coding gene olfactory receptor 1511
Gm41151 14 52393269 to 52420501 27232 + lncRNA gene predicted gene, 41151
Olfr1510 14 52409889 to 52410927 1038 - protein coding gene olfactory receptor 1510
Tssr128528 14 52417306 to 52417307 1 - TSS region transcription start site region 128528
Gm43250 14 52420556 to 52420828 272 + pseudogene predicted gene 43250
Tssr125461 14 52427931 to 52427952 21 + TSS region transcription start site region 125461
Trav1 14 52427967 to 52428876 909 + gene segment T cell receptor alpha variable 1
Tcra 14 52427967 to 54224198 1796231 + complex/cluster/region T cell receptor alpha chain
Tssr125462 14 52437078 to 52437087 9 + TSS region transcription start site region 125462
Tssr125463 14 52437107 to 52437116 9 + TSS region transcription start site region 125463
Olfr1509 14 52450393 to 52451402 1009 + protein coding gene olfactory receptor 1509
Olfr1508 14 52462721 to 52467461 4740 - protein coding gene olfactory receptor 1508
Gm43512 14 52482885 to 52483060 175 - pseudogene predicted gene 43512
Olfr1507 14 52489935 to 52495695 5760 - protein coding gene olfactory receptor 1507
Gm9537 14 52508286 to 52518788 10502 + pseudogene predicted gene 9537
Gm36382 14 52508542 to 52509082 540 - pseudogene predicted gene, 36382
Gm7122 14 52538652 to 52540876 2224 + pseudogene predicted pseudogene 7122
Gm36448 14 52538652 to 52540876 2224 - pseudogene predicted gene, 36448
Tssr125464 14 52567182 to 52567203 21 + TSS region transcription start site region 125464
Trav2 14 52567293 to 52568053 760 + gene segment T cell receptor alpha variable 2
Tssr125465 14 52580584 to 52580590 6 + TSS region transcription start site region 125465
Trav3-1 14 52580762 to 52581213 451 + gene segment T cell receptor alpha variable 3-1
Trav4-1 14 52607307 to 52607804 497 + pseudogenic gene segment T cell receptor alpha variable 4-1
Tssr4407 14 52610356 to 52610364 8 + TSS region transcription start site region 4407
Tssr125466 14 52622496 to 52622518 22 + TSS region transcription start site region 125466
Tssr125467 14 52622524 to 52622535 11 + TSS region transcription start site region 125467
Trav5-1 14 52622566 to 52623082 516 + gene segment T cell receptor alpha variable 5-1
Tssr125468 14 52622573 to 52622586 13 + TSS region transcription start site region 125468
Tssr4408 14 52623833 to 52623834 1 + TSS region transcription start site region 4408
Tssr125469 14 52638452 to 52638472 20 + TSS region transcription start site region 125469
Trav6-1 14 52638515 to 52638962 447 + gene segment T cell receptor alpha variable 6-1
Gm42988 14 52639531 to 52639755 224 + pseudogene predicted gene 42988
Tssr125470 14 52654658 to 52654674 16 + TSS region transcription start site region 125470
Trav7-1 14 52654817 to 52655328 511 + gene segment T cell receptor alpha variable 7-1
Tssr125471 14 52667356 to 52667383 27 + TSS region transcription start site region 125471
Trav6-2 14 52667411 to 52667864 453 + gene segment T cell receptor alpha variable 6-2
Trav7d-2 14 52683964 to 52684472 508 + gene segment T cell receptor alpha variable 7D-2
Trav4d-2 14 52710917 to 52711402 485 + pseudogenic gene segment T cell receptor alpha variable 4D-2
Trav6d-3 14 52725308 to 52726919 1611 + gene segment T cell receptor alpha variable 6D-3
Trav7d-3 14 52744314 to 52744838 524 + gene segment T cell receptor alpha variable 7D-3
Trav6d-4 14 52753398 to 52753846 448 + gene segment T cell receptor alpha variable 6D-4
Trav7d-4 14 52769863 to 52770392 529 + gene segment T cell receptor alpha variable 7D-4
Gm5408 14 52774869 to 52775615 746 + pseudogene predicted pseudogene 5408
Trav8d-1 14 52778510 to 52778995 485 + gene segment T cell receptor alpha variable 8D-1
Trav9d-1 14 52792316 to 52792776 460 + gene segment T cell receptor alpha variable 9D-1
Tssr125472 14 52795083 to 52795094 11 + TSS region transcription start site region 125472
Tssr125473 14 52795119 to 52795126 7 + TSS region transcription start site region 125473
Trav6d-5 14 52795165 to 52795633 468 + gene segment T cell receptor alpha variable 6D-5
Trav10d 14 52810997 to 52811496 499 + gene segment T cell receptor alpha variable 10D
Trav6d-6 14 52821922 to 52822359 437 + gene segment T cell receptor alpha variable 6D-6
Trav11d 14 52824357 to 52824912 555 + gene segment T cell receptor alpha variable 11D
Trav7d-5 14 52835861 to 52836387 526 + gene segment T cell receptor alpha variable 7D-5
Trav12d-1 14 52844560 to 52845041 481 + gene segment T cell receptor alpha variable 12D-1
Trav13d-1 14 52851355 to 52851866 511 + gene segment T cell receptor alpha variable 13D-1
Trav14d-1 14 52855665 to 52856166 501 + gene segment T cell receptor alpha variable 14D-1
Gm6740 14 52860999 to 52862750 1751 - pseudogene predicted gene 6740
Trav15d-1-dv6d-1 14 52863365 to 52863933 568 + gene segment T cell receptor alpha variable 15D-1-DV6D-1
Trav3d-2 14 52887587 to 52888080 493 + gene segment T cell receptor alpha variable 3D-2
Trav9d-2 14 52892186 to 52892618 432 + gene segment T cell receptor alpha variable 9D-2
Trav4d-3 14 52899972 to 52900470 498 + gene segment T cell receptor alpha variable 4D-3
Rps19-ps2 14 52902793 to 52903230 437 + pseudogene ribosomal protein S19, pseudogene 2
Trav5d-2 14 52914428 to 52914702 274 + pseudogenic gene segment T cell receptor alpha variable 5D-2
Trav12d-2 14 52915915 to 52916426 511 + gene segment T cell receptor alpha variable 12D-2
Trav9d-3 14 52920678 to 52921110 432 + gene segment T cell receptor alpha variable 9D-3
Trav5d-3 14 52928320 to 52928532 212 + pseudogenic gene segment T cell receptor alpha variable 5D-3
Trav12d-3 14 52929789 to 52930282 493 + gene segment T cell receptor alpha variable 12D-3
Trav13d-2 14 52942764 to 52943289 525 + gene segment T cell receptor alpha variable 13D-2
Trav14d-2 14 52948668 to 52949169 501 + gene segment T cell receptor alpha variable 14D-2
Trav15d-2-dv6d-2 14 52956828 to 52957400 572 + gene segment T cell receptor alpha variable 15D-2-DV6D-2
Gm8704 14 52969940 to 52970374 434 - pseudogene predicted gene 8704
Trav3d-3 14 52972532 to 52973038 506 + gene segment T cell receptor alpha variable 3D-3
Trav9d-4 14 52983456 to 52983770 314 + gene segment T cell receptor alpha variable 9D-4
Trav4d-4 14 52990889 to 52991389 500 + gene segment T cell receptor alpha variable 4D-4
Gm43104 14 52992957 to 52993267 310 - pseudogene predicted gene 43104
Trav5d-4 14 53001713 to 53002231 518 + gene segment T cell receptor alpha variable 5D-4
Trav6d-7 14 53007632 to 53008098 466 + gene segment T cell receptor alpha variable 6D-7
C920008G01Rik 14 53020459 to 53020991 532 + unclassified gene RIKEN cDNA C920008G01 gene
Gm30214 14 53032417 to 53039466 7049 - antisense lncRNA gene predicted gene, 30214
Trav13d-3 14 53032902 to 53033419 517 + gene segment T cell receptor alpha variable 13D-3
Tssr125474 14 53042353 to 53042360 7 + TSS region transcription start site region 125474
Trav8d-2 14 53042428 to 53042891 463 + gene segment T cell receptor alpha variable 8D-2
Trav16d-dv11 14 53047287 to 53047821 534 + gene segment T cell receptor alpha variable 16D-DV11
Trav13d-4 14 53072763 to 53073274 511 + gene segment T cell receptor alpha variable 13D-4
Tcra-V2 14 53077312 to 53369494 292182 gene segment T cell receptor alpha, variable 2
Tssr125475 14 53078487 to 53078516 29 + TSS region transcription start site region 125475
Trav14d-3-dv8 14 53078547 to 53079045 498 + gene segment T cell receptor alpha variable 14D-3-DV8
Trav15d-3 14 53082354 to 53082520 166 + pseudogenic gene segment T cell receptor alpha variable 15D-3
Trav7n-4 14 53091346 to 53091875 529 + gene segment T cell receptor alpha variable 7N-4
Trav9n-1 14 53101801 to 53102265 464 + gene segment T cell receptor alpha variable 9N-1
Trav6n-5 14 53104871 to 53105344 473 + gene segment T cell receptor alpha variable 6N-5