Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:51991046-52291066

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef40 14 51984719 to 52006251 21532 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 40
Cpgi6433 14 51996983 to 51997900 917 CpG island CpG island 6433
Zfp219 14 52006077 to 52020733 14656 - protein coding gene zinc finger protein 219
Cpgi6434 14 52006711 to 52007119 408 CpG island CpG island 6434
Cpgi6435 14 52008656 to 52009662 1006 CpG island CpG island 6435
Tssr128467 14 52008695 to 52008712 17 - TSS region transcription start site region 128467
Tssr128468 14 52008860 to 52008893 33 - TSS region transcription start site region 128468
Tssr128469 14 52008965 to 52008986 21 - TSS region transcription start site region 128469
Tssr128470 14 52009184 to 52009204 20 - TSS region transcription start site region 128470
Tssr128471 14 52009619 to 52009635 16 - TSS region transcription start site region 128471
Tssr128472 14 52009651 to 52009663 12 - TSS region transcription start site region 128472
D14Mit183 14 52010216 to 52010369 153 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 183
Tssr128473 14 52010848 to 52010863 15 - TSS region transcription start site region 128473
Tssr128474 14 52010868 to 52010905 37 - TSS region transcription start site region 128474
Cpgi6436 14 52013844 to 52015160 1316 CpG island CpG island 6436
Tssr128475 14 52014559 to 52014606 47 - TSS region transcription start site region 128475
Tssr128476 14 52014737 to 52014825 88 - TSS region transcription start site region 128476
Tssr128477 14 52014861 to 52014897 36 - TSS region transcription start site region 128477
Tssr125443 14 52014928 to 52014949 21 + TSS region transcription start site region 125443
Tssr125444 14 52014955 to 52014978 23 + TSS region transcription start site region 125444
Tssr128478 14 52014976 to 52015003 27 - TSS region transcription start site region 128478
Tmem253 14 52015658 to 52019794 4136 + protein coding gene transmembrane protein 253
Tssr125445 14 52016816 to 52016844 28 + TSS region transcription start site region 125445
Tssr125446 14 52016849 to 52016879 30 + TSS region transcription start site region 125446
Tssr125447 14 52016884 to 52016897 13 + TSS region transcription start site region 125447
Cpgi6437 14 52019508 to 52020675 1167 CpG island CpG island 6437
Tssr128479 14 52019656 to 52019706 50 - TSS region transcription start site region 128479
Tssr128480 14 52019786 to 52019813 27 - TSS region transcription start site region 128480
Tssr128481 14 52020034 to 52020078 44 - TSS region transcription start site region 128481
Gm49086 14 52020076 to 52021908 1832 + antisense lncRNA gene predicted gene, 49086
Tssr128482 14 52020640 to 52020653 13 - TSS region transcription start site region 128482
Tssr128483 14 52020661 to 52020666 5 - TSS region transcription start site region 128483
Tssr128484 14 52020669 to 52020675 6 - TSS region transcription start site region 128484
Tssr128485 14 52020680 to 52020694 14 - TSS region transcription start site region 128485
Tssr128486 14 52020698 to 52020737 39 - TSS region transcription start site region 128486
Cpgi6438 14 52023211 to 52023463 252 CpG island CpG island 6438
Gm49256 14 52023284 to 52024108 824 + lincRNA gene predicted gene, 49256
Olfr221 14 52035174 to 52036109 935 - protein coding gene olfactory receptor 221
Tssr128487 14 52066161 to 52066169 8 - TSS region transcription start site region 128487
Gm22354 14 52069300 to 52069369 69 + snoRNA gene predicted gene, 22354
Gm8586 14 52069471 to 52070019 548 + pseudogene predicted gene 8586
Gm49258 14 52071523 to 52071927 404 - pseudogene predicted gene, 49258
Hnrnpc 14 52073380 to 52104028 30648 - protein coding gene heterogeneous nuclear ribonucleoprotein C
Tssr128488 14 52078030 to 52078035 5 - TSS region transcription start site region 128488
Tssr128489 14 52079526 to 52079543 17 - TSS region transcription start site region 128489
Tssr128490 14 52080193 to 52080198 5 - TSS region transcription start site region 128490
D930017J03Rik 14 52084592 to 52089687 5095 unclassified gene RIKEN cDNA D930017J03 gene
Tssr128491 14 52088822 to 52088827 5 - TSS region transcription start site region 128491
Tssr128492 14 52095801 to 52095805 4 - TSS region transcription start site region 128492
Cpgi6439 14 52103422 to 52104498 1076 CpG island CpG island 6439
Tssr128493 14 52103991 to 52104011 20 - TSS region transcription start site region 128493
Tssr128494 14 52104015 to 52104026 11 - TSS region transcription start site region 128494
Rpgrip1 14 52110704 to 52163546 52842 + protein coding gene retinitis pigmentosa GTPase regulator interacting protein 1
Tssr125448 14 52110910 to 52110932 22 + TSS region transcription start site region 125448
Tssr125449 14 52110939 to 52110953 14 + TSS region transcription start site region 125449
Cpgi6440 14 52119061 to 52119572 511 CpG island CpG island 6440
Tssr125450 14 52136463 to 52136475 12 + TSS region transcription start site region 125450
Tssr125451 14 52136477 to 52136507 30 + TSS region transcription start site region 125451
Tssr125452 14 52136526 to 52136540 14 + TSS region transcription start site region 125452
Tssr125453 14 52136556 to 52136581 25 + TSS region transcription start site region 125453
Tssr125454 14 52140987 to 52141008 21 + TSS region transcription start site region 125454
Tssr125455 14 52141046 to 52141066 20 + TSS region transcription start site region 125455
Gm18976 14 52143574 to 52144142 568 - pseudogene predicted gene, 18976
Supt16 14 52160419 to 52197239 36820 - protein coding gene suppressor of Ty 16
Tssr128495 14 52160925 to 52160929 4 - TSS region transcription start site region 128495
Tssr128496 14 52175281 to 52175285 4 - TSS region transcription start site region 128496
D14Mit233 14 52175947 to 52176146 199 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology 233
D14Dcr2 14 52176043 to 52176140 97 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 2
Tssr128497 14 52180172 to 52180189 17 - TSS region transcription start site region 128497
Tssr128498 14 52180214 to 52180237 23 - TSS region transcription start site region 128498
Tssr128499 14 52180239 to 52180252 13 - TSS region transcription start site region 128499
Cpgi6441 14 52196521 to 52197724 1203 CpG island CpG island 6441
Tssr128500 14 52197150 to 52197173 23 - TSS region transcription start site region 128500
Tssr128501 14 52197182 to 52197207 25 - TSS region transcription start site region 128501
Tssr128502 14 52197216 to 52197267 51 - TSS region transcription start site region 128502
Tssr128503 14 52197405 to 52197465 60 - TSS region transcription start site region 128503
Gm26590 14 52197502 to 52213852 16350 + antisense lncRNA gene predicted gene, 26590
Tssr125456 14 52197511 to 52197518 7 + TSS region transcription start site region 125456
Chd8 14 52198151 to 52257780 59629 - protein coding gene chromodomain helicase DNA binding protein 8
Snord8 14 52209786 to 52209884 98 - snoRNA gene small nucleolar RNA, C/D box 8
Tssr128504 14 52235284 to 52235295 11 - TSS region transcription start site region 128504
Tssr128505 14 52237770 to 52237792 22 - TSS region transcription start site region 128505
Cpgi6442 14 52244158 to 52244747 589 CpG island CpG island 6442
Tssr128506 14 52244451 to 52244523 72 - TSS region transcription start site region 128506
Tssr128507 14 52256332 to 52256339 7 - TSS region transcription start site region 128507
Cpgi6443 14 52257354 to 52258120 766 CpG island CpG island 6443
Tssr128508 14 52257697 to 52257784 87 - TSS region transcription start site region 128508
Tssr128509 14 52257799 to 52257810 11 - TSS region transcription start site region 128509
Gm43766 14 52258811 to 52264227 5416 + unclassified gene predicted gene 43766
Rab2b 14 52261759 to 52279395 17636 - protein coding gene RAB2B, member RAS oncogene family
Tssr128510 14 52262870 to 52262898 28 - TSS region transcription start site region 128510
Tssr128511 14 52269174 to 52269195 21 - TSS region transcription start site region 128511
Gm23758 14 52276531 to 52276620 89 + snoRNA gene predicted gene, 23758
Cpgi6444 14 52278817 to 52280009 1192 CpG island CpG island 6444
Tssr128512 14 52279023 to 52279038 15 - TSS region transcription start site region 128512
Tssr125457 14 52279132 to 52279188 56 + TSS region transcription start site region 125457
Tox4 14 52279146 to 52295509 16363 + protein coding gene TOX high mobility group box family member 4
Tssr128513 14 52279238 to 52279339 101 - TSS region transcription start site region 128513
Tssr128514 14 52279346 to 52279359 13 - TSS region transcription start site region 128514
Tssr125458 14 52279581 to 52279630 49 + TSS region transcription start site region 125458