Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:48766315-49366324

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
Otx2os1 14 48669288 to 48793348 124060 + lincRNA gene orthodenticle homeobox 2 opposite strand 1
Gm22699 14 48769354 to 48769458 104 - snRNA gene predicted gene, 22699
Tssr125355 14 48798108 to 48798111 3 + TSS region transcription start site region 125355
Gm49152 14 48814421 to 48815729 1308 + unclassified gene predicted gene, 49152
Gm46453 14 48834168 to 48834534 366 - pseudogene predicted gene, 46453
Gm41149 14 48855466 to 48865546 10080 + lncRNA gene predicted gene, 41149
Gm49155 14 48867329 to 48867800 471 - pseudogene predicted gene, 49155
Gm534 14 48870258 to 48881869 11611 - lncRNA gene predicted gene 534
Gm46454 14 48870315 to 48873349 3034 + lncRNA gene predicted gene, 46454
Tssr125356 14 48878581 to 48878603 22 + TSS region transcription start site region 125356
4933429O19Rik 14 48878873 to 48887112 8239 + lncRNA gene RIKEN cDNA 4933429O19 gene
Tssr125357 14 48878878 to 48878891 13 + TSS region transcription start site region 125357
Tssr125358 14 48878912 to 48878923 11 + TSS region transcription start site region 125358
Tssr128347 14 48881844 to 48881855 11 - TSS region transcription start site region 128347
Gm36024 14 48982480 to 48985105 2625 - lncRNA gene predicted gene, 36024
Gm23470 14 49001717 to 49001836 119 - snRNA gene predicted gene, 23470
B130019D13Rik 14 49004089 to 49009826 5737 unclassified gene RIKEN cDNA B130019D13 gene
Exoc5 14 49011922 to 49066667 54745 - protein coding gene exocyst complex component 5
Gm49204 14 49023930 to 49028569 4639 - unclassified gene predicted gene, 49204
Cpgi6400 14 49065579 to 49066938 1359 CpG island CpG island 6400
Tssr128348 14 49066315 to 49066324 9 - TSS region transcription start site region 128348
Tssr128349 14 49066325 to 49066367 42 - TSS region transcription start site region 128349
Tssr128350 14 49066368 to 49066420 52 - TSS region transcription start site region 128350
Ap5m1 14 49066495 to 49094113 27618 + protein coding gene adaptor-related protein complex 5, mu 1 subunit
Tssr125359 14 49066505 to 49066587 82 + TSS region transcription start site region 125359
Tssr128351 14 49066657 to 49066674 17 - TSS region transcription start site region 128351
Tssr125360 14 49066708 to 49066743 35 + TSS region transcription start site region 125360
Rpl19-ps3 14 49112131 to 49112830 699 - pseudogene ribosomal protein L19, pseudogene 3
Cpgi6401 14 49171833 to 49173471 1638 CpG island CpG island 6401
Tssr125361 14 49172202 to 49172254 52 + TSS region transcription start site region 125361
Naa30 14 49172246 to 49190888 18642 + protein coding gene N(alpha)-acetyltransferase 30, NatC catalytic subunit
Gm48935 14 49217779 to 49220047 2268 + lincRNA gene predicted gene, 48935
Gm48936 14 49220898 to 49223364 2466 + unclassified gene predicted gene, 48936
ccdc198 14 49226358 to 49246326 19968 - protein coding gene coiled-coil domain containing 198
Tssr128352 14 49241178 to 49241181 3 - TSS region transcription start site region 128352
Tssr128353 14 49245389 to 49245441 52 - TSS region transcription start site region 128353
Slc35f4 14 49298520 to 49525837 227317 - protein coding gene solute carrier family 35, member F4
Gm48940 14 49299836 to 49304512 4676 + antisense lncRNA gene predicted gene, 48940