Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:48446861-53636879

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756 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
Tmem260 14 48446123 to 48520708 74585 + protein coding gene transmembrane protein 260
Cpgi6392 14 48451974 to 48452166 192 CpG island CpG island 6392
Tssr125342 14 48464182 to 48464184 2 + TSS region transcription start site region 125342
Gm49519 14 48518236 to 48560287 42051 + unclassified non-coding RNA gene predicted gene, 49519
Gm49096 14 48530358 to 48532665 2307 + unclassified gene predicted gene, 49096
4930572G02Rik 14 48537991 to 48571888 33897 + lincRNA gene RIKEN cDNA 4930572G02 gene
Tssr125343 14 48538347 to 48538367 20 + TSS region transcription start site region 125343
Tssr125344 14 48553257 to 48553266 9 + TSS region transcription start site region 125344
Tssr125345 14 48580621 to 48580625 4 + TSS region transcription start site region 125345
Gm49120 14 48590599 to 48596402 5803 + lincRNA gene predicted gene, 49120
D14Mit121 14 48626981 to 48627130 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 121
Gm35766 14 48636152 to 48640715 4563 + lincRNA gene predicted gene, 35766
Gm49151 14 48643461 to 48649774 6313 + lincRNA gene predicted gene, 49151
Cpgi6393 14 48651642 to 48651927 285 CpG island CpG island 6393
Gm23469 14 48652499 to 48652602 103 + snRNA gene predicted gene, 23469
Tssr125346 14 48654826 to 48654851 25 + TSS region transcription start site region 125346
Tssr125347 14 48655281 to 48655295 14 + TSS region transcription start site region 125347
Tssr125348 14 48655306 to 48655318 12 + TSS region transcription start site region 125348
Cpgi6394 14 48655333 to 48655490 157 CpG island CpG island 6394
Otx2 14 48657452 to 48667644 10192 - protein coding gene orthodenticle homeobox 2
Cpgi6395 14 48662063 to 48662619 556 CpG island CpG island 6395
Tssr128341 14 48662740 to 48662751 11 - TSS region transcription start site region 128341
Cpgi6396 14 48664899 to 48665545 646 CpG island CpG island 6396
Tssr128342 14 48665098 to 48665115 17 - TSS region transcription start site region 128342
Cpgi6397 14 48665956 to 48667032 1076 CpG island CpG island 6397
Tssr128343 14 48667432 to 48667450 18 - TSS region transcription start site region 128343
Tssr128344 14 48667477 to 48667478 1 - TSS region transcription start site region 128344
Tssr128345 14 48667511 to 48667550 39 - TSS region transcription start site region 128345
Tssr125349 14 48667651 to 48667653 2 + TSS region transcription start site region 125349
Cpgi6398 14 48668834 to 48669205 371 CpG island CpG island 6398
Otx2os1 14 48669288 to 48793348 124060 + lincRNA gene orthodenticle homeobox 2 opposite strand 1
Tssr125350 14 48670118 to 48670130 12 + TSS region transcription start site region 125350
Tssr125351 14 48670147 to 48670153 6 + TSS region transcription start site region 125351
Tssr4392 14 48670189 to 48670202 13 + TSS region transcription start site region 4392
Tssr125352 14 48670285 to 48670334 49 + TSS region transcription start site region 125352
Gm49154 14 48672094 to 48673899 1805 - unclassified gene predicted gene, 49154
Cpgi6399 14 48673558 to 48674581 1023 CpG island CpG island 6399
Tssr125353 14 48694913 to 48694924 11 + TSS region transcription start site region 125353
Gm48909 14 48695601 to 48695981 380 - pseudogene predicted gene 48909
Gm25380 14 48695982 to 48696088 106 - snRNA gene predicted gene, 25380
Gm49153 14 48704184 to 48706120 1936 + unclassified gene predicted gene, 49153
Gm38660 14 48707989 to 48720509 12520 + lncRNA gene predicted gene, 38660
Gm49156 14 48727414 to 48740809 13395 - lincRNA gene predicted gene, 49156
Tssr128346 14 48742330 to 48742344 14 - TSS region transcription start site region 128346
Tssr125354 14 48760863 to 48760866 3 + TSS region transcription start site region 125354
Gm22699 14 48769354 to 48769458 104 - snRNA gene predicted gene, 22699
Tssr125355 14 48798108 to 48798111 3 + TSS region transcription start site region 125355
Gm49152 14 48814421 to 48815729 1308 + unclassified gene predicted gene, 49152
Gm46453 14 48834168 to 48834534 366 - pseudogene predicted gene, 46453
Gm41149 14 48855466 to 48865546 10080 + lncRNA gene predicted gene, 41149
Gm49155 14 48867329 to 48867800 471 - pseudogene predicted gene, 49155
Gm534 14 48870258 to 48881869 11611 - lncRNA gene predicted gene 534
Gm46454 14 48870315 to 48873349 3034 + lncRNA gene predicted gene, 46454
Tssr125356 14 48878581 to 48878603 22 + TSS region transcription start site region 125356
4933429O19Rik 14 48878873 to 48887112 8239 + lncRNA gene RIKEN cDNA 4933429O19 gene
Tssr125357 14 48878878 to 48878891 13 + TSS region transcription start site region 125357
Tssr125358 14 48878912 to 48878923 11 + TSS region transcription start site region 125358
Tssr128347 14 48881844 to 48881855 11 - TSS region transcription start site region 128347
Gm36024 14 48982480 to 48985105 2625 - lncRNA gene predicted gene, 36024
Gm23470 14 49001717 to 49001836 119 - snRNA gene predicted gene, 23470
B130019D13Rik 14 49004089 to 49009826 5737 unclassified gene RIKEN cDNA B130019D13 gene
Exoc5 14 49011922 to 49066667 54745 - protein coding gene exocyst complex component 5
Gm49204 14 49023930 to 49028569 4639 - unclassified gene predicted gene, 49204
Cpgi6400 14 49065579 to 49066938 1359 CpG island CpG island 6400
Tssr128348 14 49066315 to 49066324 9 - TSS region transcription start site region 128348
Tssr128349 14 49066325 to 49066367 42 - TSS region transcription start site region 128349
Tssr128350 14 49066368 to 49066420 52 - TSS region transcription start site region 128350
Ap5m1 14 49066495 to 49094113 27618 + protein coding gene adaptor-related protein complex 5, mu 1 subunit
Tssr125359 14 49066505 to 49066587 82 + TSS region transcription start site region 125359
Tssr128351 14 49066657 to 49066674 17 - TSS region transcription start site region 128351
Tssr125360 14 49066708 to 49066743 35 + TSS region transcription start site region 125360
Rpl19-ps3 14 49112131 to 49112830 699 - pseudogene ribosomal protein L19, pseudogene 3
Cpgi6401 14 49171833 to 49173471 1638 CpG island CpG island 6401
Tssr125361 14 49172202 to 49172254 52 + TSS region transcription start site region 125361
Naa30 14 49172246 to 49190888 18642 + protein coding gene N(alpha)-acetyltransferase 30, NatC catalytic subunit
Gm48935 14 49217779 to 49220047 2268 + lincRNA gene predicted gene, 48935
Gm48936 14 49220898 to 49223364 2466 + unclassified gene predicted gene, 48936
ccdc198 14 49226358 to 49246326 19968 - protein coding gene coiled-coil domain containing 198
Tssr128352 14 49241178 to 49241181 3 - TSS region transcription start site region 128352
Tssr128353 14 49245389 to 49245441 52 - TSS region transcription start site region 128353
Slc35f4 14 49298520 to 49525837 227317 - protein coding gene solute carrier family 35, member F4
Gm48940 14 49299836 to 49304512 4676 + antisense lncRNA gene predicted gene, 48940
D14Mit258 14 49398523 to 49398612 89 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 258
D14Mit130 14 49447941 to 49448086 145 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 130
Gm22116 14 49520029 to 49520169 140 - snRNA gene predicted gene, 22116
D14Mit101 14 49524646 to 49524778 132 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 101
Cpgi6402 14 49525156 to 49526107 951 CpG island CpG island 6402
Tssr128354 14 49525713 to 49525732 19 - TSS region transcription start site region 128354
Tssr128355 14 49525840 to 49525903 63 - TSS region transcription start site region 128355
Gm22949 14 49573214 to 49573318 104 - miRNA gene predicted gene, 22949
Gm36082 14 49669807 to 49672794 2987 - lncRNA gene predicted gene, 36082
Armh4 14 49681664 to 49783409 101745 - protein coding gene armadillo-like helical domain containing 4
Tssr128356 14 49686515 to 49686520 5 - TSS region transcription start site region 128356
Gm16082 14 49713246 to 49713622 376 - pseudogene predicted gene 16082
Gm36146 14 49722652 to 49744296 21644 + antisense lncRNA gene predicted gene, 36146
Tssr125362 14 49724620 to 49724642 22 + TSS region transcription start site region 125362
Gm48950 14 49736658 to 49738009 1351 - unclassified gene predicted gene, 48950
Gm48948 14 49747251 to 49748193 942 - unclassified gene predicted gene, 48948
Cpgi6403 14 49783191 to 49783555 364 CpG island CpG island 6403
Tssr128357 14 49783327 to 49783394 67 - TSS region transcription start site region 128357
Gm22989 14 49788284 to 49788369 85 + snRNA gene predicted gene, 22989
Gm8417 14 49804016 to 49807240 3224 + pseudogene predicted gene 8417
Olfr722 14 49894258 to 49901941 7683 - protein coding gene olfactory receptor 722
Olfr723 14 49928563 to 49931787 3224 - protein coding gene olfactory receptor 723
Olfr724 14 49960091 to 49961096 1005 - protein coding gene olfactory receptor 724
Gm49133 14 49984923 to 49985274 351 + pseudogene predicted gene, 49133
Olfr725 14 50034314 to 50040375 6061 - protein coding gene olfactory receptor 725
Tssr125363 14 50061357 to 50061361 4 + TSS region transcription start site region 125363
Gm37194 14 50061360 to 50064390 3030 + unclassified gene predicted gene, 37194
Cpgi6404 14 50061680 to 50062676 996 CpG island CpG island 6404
Tssr125364 14 50062280 to 50062293 13 + TSS region transcription start site region 125364
Olfr726 14 50083714 to 50084679 965 - protein coding gene olfactory receptor 726
Olfr727 14 50126553 to 50127587 1034 + protein coding gene olfactory receptor 727
Olfr728 14 50139702 to 50140637 935 - protein coding gene olfactory receptor 728
Olfr729 14 50147901 to 50148872 971 - protein coding gene olfactory receptor 729
Olfr730 14 50186262 to 50187218 956 - protein coding gene olfactory receptor 730
Olfr731 14 50237903 to 50238883 980 - protein coding gene olfactory receptor 731
D14Mit61 14 50277539 to 50277717 178 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 61
Olfr732 14 50281228 to 50282271 1043 - protein coding gene olfactory receptor 732
Olfr733 14 50298337 to 50299330 993 - protein coding gene olfactory receptor 733
Olfr734 14 50319892 to 50320833 941 - protein coding gene olfactory receptor 734
Olfr735 14 50345376 to 50346440 1064 - protein coding gene olfactory receptor 735
Tssr125365 14 50357885 to 50357898 13 + TSS region transcription start site region 125365
Tssr125366 14 50357904 to 50357916 12 + TSS region transcription start site region 125366
Tlr11 14 50357914 to 50363663 5749 + protein coding gene toll-like receptor 11
Tssr4393 14 50381284 to 50381294 10 - TSS region transcription start site region 4393
Tssr128358 14 50381300 to 50381311 11 - TSS region transcription start site region 128358
Tssr128359 14 50381361 to 50381392 31 - TSS region transcription start site region 128359
Olfr736 14 50392758 to 50393696 938 + protein coding gene olfactory receptor 736
Tssr4394 14 50397082 to 50397092 10 - TSS region transcription start site region 4394
Olfr737-ps1 14 50411178 to 50411460 282 - pseudogene olfactory receptor 737, pseudogene 1
Olfr738 14 50413546 to 50414481 935 + protein coding gene olfactory receptor 738
Olfr739 14 50424521 to 50425450 929 + protein coding gene olfactory receptor 739
Olfr740 14 50453054 to 50455678 2624 + protein coding gene olfactory receptor 740
Tssr125367 14 50466030 to 50466033 3 + TSS region transcription start site region 125367
Olfr741 14 50473057 to 50486395 13338 + protein coding gene olfactory receptor 741
4930413M19Rik 14 50503769 to 50520943 17174 + lncRNA gene RIKEN cDNA 4930413M19 gene
Olfr742 14 50515121 to 50516240 1119 + protein coding gene olfactory receptor 742
Olfr743 14 50533414 to 50534349 935 + protein coding gene olfactory receptor 743
Gm19109 14 50552868 to 50553828 960 + pseudogene predicted gene, 19109
Olfr744 14 50618224 to 50619195 971 + protein coding gene olfactory receptor 744
Olfr745 14 50642195 to 50643369 1174 + protein coding gene olfactory receptor 745
Gm45192 14 50645388 to 50645670 282 - pseudogene predicted gene 45192
Olfr746 14 50653239 to 50654183 944 + protein coding gene olfactory receptor 746
Gm18762 14 50670388 to 50672234 1846 + pseudogene predicted gene, 18762
Olfr747 14 50680691 to 50681645 954 - protein coding gene olfactory receptor 747
Olfr748 14 50710332 to 50711255 923 + protein coding gene olfactory receptor 748
Gm24316 14 50731053 to 50731159 106 + snRNA gene predicted gene, 24316
Olfr749 14 50736219 to 50744324 8105 - protein coding gene olfactory receptor 749
Ttc5 14 50765415 to 50785519 20104 - protein coding gene tetratricopeptide repeat domain 5
Tssr125368 14 50769205 to 50769207 2 + TSS region transcription start site region 125368
Gm10916 14 50769248 to 50769730 482 + pseudogene predicted gene 10916
Tssr128360 14 50781214 to 50781219 5 - TSS region transcription start site region 128360
Cpgi6405 14 50785246 to 50785606 360 CpG island CpG island 6405
Gm48938 14 50787816 to 50788239 423 + pseudogene predicted gene, 48938
Ccnb1ip1 14 50789249 to 50795728 6479 - protein coding gene cyclin B1 interacting protein 1
Tssr128361 14 50795689 to 50795705 16 - TSS region transcription start site region 128361
Cpgi6406 14 50805007 to 50805230 223 CpG island CpG island 6406
Rpph1 14 50807449 to 50807767 318 - RNase P RNA gene ribonuclease P RNA component H1
Cpgi6407 14 50807484 to 50808091 607 CpG island CpG island 6407
Tssr125369 14 50807490 to 50807511 21 + TSS region transcription start site region 125369
Tssr128362 14 50807561 to 50807565 4 - TSS region transcription start site region 128362
Tssr128363 14 50807580 to 50807587 7 - TSS region transcription start site region 128363
Tssr128364 14 50807600 to 50807658 58 - TSS region transcription start site region 128364
Tssr128365 14 50807708 to 50807720 12 - TSS region transcription start site region 128365
Tssr128366 14 50807725 to 50807732 7 - TSS region transcription start site region 128366
Tssr128367 14 50807740 to 50807756 16 - TSS region transcription start site region 128367
Tssr128368 14 50807758 to 50807776 18 - TSS region transcription start site region 128368
Parp2 14 50807897 to 50821301 13404 + protein coding gene poly (ADP-ribose) polymerase family, member 2
Tssr125370 14 50807915 to 50807942 27 + TSS region transcription start site region 125370
Tep1 14 50824061 to 50870554 46493 - protein coding gene telomerase associated protein 1
Tssr128369 14 50826880 to 50826894 14 - TSS region transcription start site region 128369
Tssr128370 14 50826919 to 50826941 22 - TSS region transcription start site region 128370
Tssr128371 14 50830038 to 50830075 37 - TSS region transcription start site region 128371
Tssr128372 14 50833939 to 50833977 38 - TSS region transcription start site region 128372
Tssr128373 14 50834033 to 50834058 25 - TSS region transcription start site region 128373
Tssr125371 14 50834738 to 50834784 46 + TSS region transcription start site region 125371
Tssr128374 14 50835670 to 50835678 8 - TSS region transcription start site region 128374
Tssr128375 14 50836384 to 50836399 15 - TSS region transcription start site region 128375
Tssr128376 14 50836451 to 50836464 13 - TSS region transcription start site region 128376
Tssr125372 14 50839792 to 50839830 38 + TSS region transcription start site region 125372
Tssr128377 14 50840522 to 50840525 3 - TSS region transcription start site region 128377
Tssr128378 14 50851140 to 50851157 17 - TSS region transcription start site region 128378
Tssr128379 14 50869350 to 50869355 5 - TSS region transcription start site region 128379
Cpgi6408 14 50870277 to 50870488 211 CpG island CpG island 6408
Tssr125373 14 50870355 to 50870407 52 + TSS region transcription start site region 125373
Gm26782 14 50870469 to 50877205 6736 + antisense lncRNA gene predicted gene, 26782
Tssr128380 14 50870499 to 50870550 51 - TSS region transcription start site region 128380
Tssr128381 14 50870557 to 50870571 14 - TSS region transcription start site region 128381
2310007J06Rik 14 50888581 to 50890566 1985 unclassified non-coding RNA gene RIKEN cDNA 2310007J06 gene
Klhl33 14 50888582 to 50897507 8925 - protein coding gene kelch-like 33
Cpgi6409 14 50892441 to 50892942 501 CpG island CpG island 6409
Tssr125374 14 50896421 to 50896434 13 + TSS region transcription start site region 125374
Cpgi6410 14 50896485 to 50897020 535 CpG island CpG island 6410
Tssr128382 14 50897384 to 50897397 13 - TSS region transcription start site region 128382
Tssr128383 14 50897448 to 50897457 9 - TSS region transcription start site region 128383
Tssr128384 14 50897472 to 50897507 35 - TSS region transcription start site region 128384
Tssr128385 14 50897517 to 50897529 12 - TSS region transcription start site region 128385