Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:48442329-49292800

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
Cpgi6391 14 48445985 to 48446831 846 CpG island CpG island 6391
Tmem260 14 48446123 to 48520708 74585 + protein coding gene transmembrane protein 260
Tssr125340 14 48446265 to 48446276 11 + TSS region transcription start site region 125340
Tssr125341 14 48446340 to 48446429 89 + TSS region transcription start site region 125341
Cpgi6392 14 48451974 to 48452166 192 CpG island CpG island 6392
Tssr125342 14 48464182 to 48464184 2 + TSS region transcription start site region 125342
Gm49519 14 48518236 to 48560287 42051 + unclassified non-coding RNA gene predicted gene, 49519
Gm49096 14 48530358 to 48532665 2307 + unclassified gene predicted gene, 49096
4930572G02Rik 14 48537991 to 48571888 33897 + lincRNA gene RIKEN cDNA 4930572G02 gene
Tssr125343 14 48538347 to 48538367 20 + TSS region transcription start site region 125343
Tssr125344 14 48553257 to 48553266 9 + TSS region transcription start site region 125344
Tssr125345 14 48580621 to 48580625 4 + TSS region transcription start site region 125345
Gm49120 14 48590599 to 48596402 5803 + lincRNA gene predicted gene, 49120
D14Mit121 14 48626981 to 48627130 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 121
Gm35766 14 48636152 to 48640715 4563 + lincRNA gene predicted gene, 35766
Gm49151 14 48643461 to 48649774 6313 + lincRNA gene predicted gene, 49151
Cpgi6393 14 48651642 to 48651927 285 CpG island CpG island 6393
Gm23469 14 48652499 to 48652602 103 + snRNA gene predicted gene, 23469
Tssr125346 14 48654826 to 48654851 25 + TSS region transcription start site region 125346
Tssr125347 14 48655281 to 48655295 14 + TSS region transcription start site region 125347
Tssr125348 14 48655306 to 48655318 12 + TSS region transcription start site region 125348
Cpgi6394 14 48655333 to 48655490 157 CpG island CpG island 6394
Otx2 14 48657452 to 48667644 10192 - protein coding gene orthodenticle homeobox 2
Cpgi6395 14 48662063 to 48662619 556 CpG island CpG island 6395
Tssr128341 14 48662740 to 48662751 11 - TSS region transcription start site region 128341
Cpgi6396 14 48664899 to 48665545 646 CpG island CpG island 6396
Tssr128342 14 48665098 to 48665115 17 - TSS region transcription start site region 128342
Cpgi6397 14 48665956 to 48667032 1076 CpG island CpG island 6397
Tssr128343 14 48667432 to 48667450 18 - TSS region transcription start site region 128343
Tssr128344 14 48667477 to 48667478 1 - TSS region transcription start site region 128344
Tssr128345 14 48667511 to 48667550 39 - TSS region transcription start site region 128345
Tssr125349 14 48667651 to 48667653 2 + TSS region transcription start site region 125349
Cpgi6398 14 48668834 to 48669205 371 CpG island CpG island 6398
Otx2os1 14 48669288 to 48793348 124060 + lincRNA gene orthodenticle homeobox 2 opposite strand 1
Tssr125350 14 48670118 to 48670130 12 + TSS region transcription start site region 125350
Tssr125351 14 48670147 to 48670153 6 + TSS region transcription start site region 125351
Tssr4392 14 48670189 to 48670202 13 + TSS region transcription start site region 4392
Tssr125352 14 48670285 to 48670334 49 + TSS region transcription start site region 125352
Gm49154 14 48672094 to 48673899 1805 - unclassified gene predicted gene, 49154
Cpgi6399 14 48673558 to 48674581 1023 CpG island CpG island 6399
Tssr125353 14 48694913 to 48694924 11 + TSS region transcription start site region 125353
Gm48909 14 48695601 to 48695981 380 - pseudogene predicted gene 48909
Gm25380 14 48695982 to 48696088 106 - snRNA gene predicted gene, 25380
Gm49153 14 48704184 to 48706120 1936 + unclassified gene predicted gene, 49153
Gm38660 14 48707989 to 48720509 12520 + lncRNA gene predicted gene, 38660
Gm49156 14 48727414 to 48740809 13395 - lincRNA gene predicted gene, 49156
Tssr128346 14 48742330 to 48742344 14 - TSS region transcription start site region 128346
Tssr125354 14 48760863 to 48760866 3 + TSS region transcription start site region 125354
Gm22699 14 48769354 to 48769458 104 - snRNA gene predicted gene, 22699
Tssr125355 14 48798108 to 48798111 3 + TSS region transcription start site region 125355
Gm49152 14 48814421 to 48815729 1308 + unclassified gene predicted gene, 49152
Gm46453 14 48834168 to 48834534 366 - pseudogene predicted gene, 46453
Gm41149 14 48855466 to 48865546 10080 + lncRNA gene predicted gene, 41149
Gm49155 14 48867329 to 48867800 471 - pseudogene predicted gene, 49155
Gm534 14 48870258 to 48881869 11611 - lncRNA gene predicted gene 534
Gm46454 14 48870315 to 48873349 3034 + lncRNA gene predicted gene, 46454
Tssr125356 14 48878581 to 48878603 22 + TSS region transcription start site region 125356
4933429O19Rik 14 48878873 to 48887112 8239 + lncRNA gene RIKEN cDNA 4933429O19 gene
Tssr125357 14 48878878 to 48878891 13 + TSS region transcription start site region 125357
Tssr125358 14 48878912 to 48878923 11 + TSS region transcription start site region 125358
Tssr128347 14 48881844 to 48881855 11 - TSS region transcription start site region 128347
Gm36024 14 48982480 to 48985105 2625 - lncRNA gene predicted gene, 36024
Gm23470 14 49001717 to 49001836 119 - snRNA gene predicted gene, 23470
B130019D13Rik 14 49004089 to 49009826 5737 unclassified gene RIKEN cDNA B130019D13 gene
Exoc5 14 49011922 to 49066667 54745 - protein coding gene exocyst complex component 5
Gm49204 14 49023930 to 49028569 4639 - unclassified gene predicted gene, 49204
Cpgi6400 14 49065579 to 49066938 1359 CpG island CpG island 6400
Tssr128348 14 49066315 to 49066324 9 - TSS region transcription start site region 128348
Tssr128349 14 49066325 to 49066367 42 - TSS region transcription start site region 128349
Tssr128350 14 49066368 to 49066420 52 - TSS region transcription start site region 128350
Ap5m1 14 49066495 to 49094113 27618 + protein coding gene adaptor-related protein complex 5, mu 1 subunit
Tssr125359 14 49066505 to 49066587 82 + TSS region transcription start site region 125359
Tssr128351 14 49066657 to 49066674 17 - TSS region transcription start site region 128351
Tssr125360 14 49066708 to 49066743 35 + TSS region transcription start site region 125360
Rpl19-ps3 14 49112131 to 49112830 699 - pseudogene ribosomal protein L19, pseudogene 3
Cpgi6401 14 49171833 to 49173471 1638 CpG island CpG island 6401
Tssr125361 14 49172202 to 49172254 52 + TSS region transcription start site region 125361
Naa30 14 49172246 to 49190888 18642 + protein coding gene N(alpha)-acetyltransferase 30, NatC catalytic subunit
Gm48935 14 49217779 to 49220047 2268 + lincRNA gene predicted gene, 48935
Gm48936 14 49220898 to 49223364 2466 + unclassified gene predicted gene, 48936
ccdc198 14 49226358 to 49246326 19968 - protein coding gene coiled-coil domain containing 198
Tssr128352 14 49241178 to 49241181 3 - TSS region transcription start site region 128352
Tssr128353 14 49245389 to 49245441 52 - TSS region transcription start site region 128353