Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:48411495-49749113

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
Cpgi6391 14 48445985 to 48446831 846 CpG island CpG island 6391
Tmem260 14 48446123 to 48520708 74585 + protein coding gene transmembrane protein 260
Tssr125340 14 48446265 to 48446276 11 + TSS region transcription start site region 125340
Tssr125341 14 48446340 to 48446429 89 + TSS region transcription start site region 125341
Cpgi6392 14 48451974 to 48452166 192 CpG island CpG island 6392
Tssr125342 14 48464182 to 48464184 2 + TSS region transcription start site region 125342
Gm49519 14 48518236 to 48560287 42051 + unclassified non-coding RNA gene predicted gene, 49519
Gm49096 14 48530358 to 48532665 2307 + unclassified gene predicted gene, 49096
4930572G02Rik 14 48537991 to 48571888 33897 + lincRNA gene RIKEN cDNA 4930572G02 gene
Tssr125343 14 48538347 to 48538367 20 + TSS region transcription start site region 125343
Tssr125344 14 48553257 to 48553266 9 + TSS region transcription start site region 125344
Tssr125345 14 48580621 to 48580625 4 + TSS region transcription start site region 125345
Gm49120 14 48590599 to 48596402 5803 + lincRNA gene predicted gene, 49120
D14Mit121 14 48626981 to 48627130 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 121
Gm35766 14 48636152 to 48640715 4563 + lincRNA gene predicted gene, 35766
Gm49151 14 48643461 to 48649774 6313 + lincRNA gene predicted gene, 49151
Cpgi6393 14 48651642 to 48651927 285 CpG island CpG island 6393
Gm23469 14 48652499 to 48652602 103 + snRNA gene predicted gene, 23469
Tssr125346 14 48654826 to 48654851 25 + TSS region transcription start site region 125346
Tssr125347 14 48655281 to 48655295 14 + TSS region transcription start site region 125347
Tssr125348 14 48655306 to 48655318 12 + TSS region transcription start site region 125348
Cpgi6394 14 48655333 to 48655490 157 CpG island CpG island 6394
Otx2 14 48657452 to 48667644 10192 - protein coding gene orthodenticle homeobox 2
Cpgi6395 14 48662063 to 48662619 556 CpG island CpG island 6395
Tssr128341 14 48662740 to 48662751 11 - TSS region transcription start site region 128341
Cpgi6396 14 48664899 to 48665545 646 CpG island CpG island 6396
Tssr128342 14 48665098 to 48665115 17 - TSS region transcription start site region 128342
Cpgi6397 14 48665956 to 48667032 1076 CpG island CpG island 6397
Tssr128343 14 48667432 to 48667450 18 - TSS region transcription start site region 128343
Tssr128344 14 48667477 to 48667478 1 - TSS region transcription start site region 128344
Tssr128345 14 48667511 to 48667550 39 - TSS region transcription start site region 128345
Tssr125349 14 48667651 to 48667653 2 + TSS region transcription start site region 125349
Cpgi6398 14 48668834 to 48669205 371 CpG island CpG island 6398
Otx2os1 14 48669288 to 48793348 124060 + lincRNA gene orthodenticle homeobox 2 opposite strand 1
Tssr125350 14 48670118 to 48670130 12 + TSS region transcription start site region 125350
Tssr125351 14 48670147 to 48670153 6 + TSS region transcription start site region 125351
Tssr4392 14 48670189 to 48670202 13 + TSS region transcription start site region 4392
Tssr125352 14 48670285 to 48670334 49 + TSS region transcription start site region 125352
Gm49154 14 48672094 to 48673899 1805 - unclassified gene predicted gene, 49154
Cpgi6399 14 48673558 to 48674581 1023 CpG island CpG island 6399
Tssr125353 14 48694913 to 48694924 11 + TSS region transcription start site region 125353
Gm48909 14 48695601 to 48695981 380 - pseudogene predicted gene 48909
Gm25380 14 48695982 to 48696088 106 - snRNA gene predicted gene, 25380
Gm49153 14 48704184 to 48706120 1936 + unclassified gene predicted gene, 49153
Gm38660 14 48707989 to 48720509 12520 + lncRNA gene predicted gene, 38660
Gm49156 14 48727414 to 48740809 13395 - lincRNA gene predicted gene, 49156
Tssr128346 14 48742330 to 48742344 14 - TSS region transcription start site region 128346
Tssr125354 14 48760863 to 48760866 3 + TSS region transcription start site region 125354
Gm22699 14 48769354 to 48769458 104 - snRNA gene predicted gene, 22699
Tssr125355 14 48798108 to 48798111 3 + TSS region transcription start site region 125355
Gm49152 14 48814421 to 48815729 1308 + unclassified gene predicted gene, 49152
Gm46453 14 48834168 to 48834534 366 - pseudogene predicted gene, 46453
Gm41149 14 48855466 to 48865546 10080 + lncRNA gene predicted gene, 41149
Gm49155 14 48867329 to 48867800 471 - pseudogene predicted gene, 49155
Gm534 14 48870258 to 48881869 11611 - lncRNA gene predicted gene 534
Gm46454 14 48870315 to 48873349 3034 + lncRNA gene predicted gene, 46454
Tssr125356 14 48878581 to 48878603 22 + TSS region transcription start site region 125356
4933429O19Rik 14 48878873 to 48887112 8239 + lncRNA gene RIKEN cDNA 4933429O19 gene
Tssr125357 14 48878878 to 48878891 13 + TSS region transcription start site region 125357
Tssr125358 14 48878912 to 48878923 11 + TSS region transcription start site region 125358
Tssr128347 14 48881844 to 48881855 11 - TSS region transcription start site region 128347
Gm36024 14 48982480 to 48985105 2625 - lncRNA gene predicted gene, 36024
Gm23470 14 49001717 to 49001836 119 - snRNA gene predicted gene, 23470
B130019D13Rik 14 49004089 to 49009826 5737 unclassified gene RIKEN cDNA B130019D13 gene
Exoc5 14 49011922 to 49066667 54745 - protein coding gene exocyst complex component 5
Gm49204 14 49023930 to 49028569 4639 - unclassified gene predicted gene, 49204
Cpgi6400 14 49065579 to 49066938 1359 CpG island CpG island 6400
Tssr128348 14 49066315 to 49066324 9 - TSS region transcription start site region 128348
Tssr128349 14 49066325 to 49066367 42 - TSS region transcription start site region 128349
Tssr128350 14 49066368 to 49066420 52 - TSS region transcription start site region 128350
Ap5m1 14 49066495 to 49094113 27618 + protein coding gene adaptor-related protein complex 5, mu 1 subunit
Tssr125359 14 49066505 to 49066587 82 + TSS region transcription start site region 125359
Tssr128351 14 49066657 to 49066674 17 - TSS region transcription start site region 128351
Tssr125360 14 49066708 to 49066743 35 + TSS region transcription start site region 125360
Rpl19-ps3 14 49112131 to 49112830 699 - pseudogene ribosomal protein L19, pseudogene 3
Cpgi6401 14 49171833 to 49173471 1638 CpG island CpG island 6401
Tssr125361 14 49172202 to 49172254 52 + TSS region transcription start site region 125361
Naa30 14 49172246 to 49190888 18642 + protein coding gene N(alpha)-acetyltransferase 30, NatC catalytic subunit
Gm48935 14 49217779 to 49220047 2268 + lincRNA gene predicted gene, 48935
Gm48936 14 49220898 to 49223364 2466 + unclassified gene predicted gene, 48936
ccdc198 14 49226358 to 49246326 19968 - protein coding gene coiled-coil domain containing 198
Tssr128352 14 49241178 to 49241181 3 - TSS region transcription start site region 128352
Tssr128353 14 49245389 to 49245441 52 - TSS region transcription start site region 128353
Slc35f4 14 49298520 to 49525837 227317 - protein coding gene solute carrier family 35, member F4
Gm48940 14 49299836 to 49304512 4676 + antisense lncRNA gene predicted gene, 48940
D14Mit258 14 49398523 to 49398612 89 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 258
D14Mit130 14 49447941 to 49448086 145 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 130
Gm22116 14 49520029 to 49520169 140 - snRNA gene predicted gene, 22116
D14Mit101 14 49524646 to 49524778 132 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 101
Cpgi6402 14 49525156 to 49526107 951 CpG island CpG island 6402
Tssr128354 14 49525713 to 49525732 19 - TSS region transcription start site region 128354
Tssr128355 14 49525840 to 49525903 63 - TSS region transcription start site region 128355
Gm22949 14 49573214 to 49573318 104 - miRNA gene predicted gene, 22949
Gm36082 14 49669807 to 49672794 2987 - lncRNA gene predicted gene, 36082
Armh4 14 49681664 to 49783409 101745 - protein coding gene armadillo-like helical domain containing 4
Tssr128356 14 49686515 to 49686520 5 - TSS region transcription start site region 128356
Gm16082 14 49713246 to 49713622 376 - pseudogene predicted gene 16082
Gm36146 14 49722652 to 49744296 21644 + antisense lncRNA gene predicted gene, 36146
Tssr125362 14 49724620 to 49724642 22 + TSS region transcription start site region 125362
Gm48950 14 49736658 to 49738009 1351 - unclassified gene predicted gene, 48950
Gm48948 14 49747251 to 49748193 942 - unclassified gene predicted gene, 48948