Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:47939337-48789402

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
4930447J18Rik 14 47898864 to 47944189 45325 + lincRNA gene RIKEN cDNA 4930447J18 gene
Gm49303 14 47960019 to 47973713 13694 + lincRNA gene predicted gene, 49303
Gm49304 14 47991528 to 47993803 2275 - lincRNA gene predicted gene, 49304
Tssr128340 14 47993797 to 47993805 8 - TSS region transcription start site region 128340
Gm49305 14 47993941 to 47997714 3773 + lincRNA gene predicted gene, 49305
Tssr4390 14 47995199 to 47995200 1 + TSS region transcription start site region 4390
Gm49306 14 48047011 to 48058470 11459 + lincRNA gene predicted gene, 49306
Gm6055 14 48079375 to 48079752 377 - pseudogene predicted gene 6055
D14Mit4 14 48110224 to 48110419 195 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 4
Cpgi6389 14 48120483 to 48121813 1330 CpG island CpG island 6389
Tssr125333 14 48120740 to 48120782 42 + TSS region transcription start site region 125333
Tssr125334 14 48120810 to 48120828 18 + TSS region transcription start site region 125334
Peli2 14 48120823 to 48281575 160752 + protein coding gene pellino 2
Tssr125335 14 48120841 to 48120865 24 + TSS region transcription start site region 125335
Tssr125336 14 48120873 to 48120956 83 + TSS region transcription start site region 125336
Tssr125337 14 48120958 to 48120967 9 + TSS region transcription start site region 125337
9530086P17Rik 14 48129485 to 48130163 678 - unclassified gene RIKEN cDNA 9530086P17 gene
Tssr125338 14 48132865 to 48132869 4 + TSS region transcription start site region 125338
Gm49310 14 48134224 to 48137246 3022 + unclassified gene predicted gene, 49310
Gm49307 14 48196760 to 48198030 1270 + unclassified gene predicted gene, 49307
Tssr125339 14 48227126 to 48227130 4 + TSS region transcription start site region 125339
Gm6498 14 48227201 to 48228206 1005 + pseudogene predicted gene 6498
Cpgi6390 14 48235170 to 48235355 185 CpG island CpG island 6390
Tssr4391 14 48250564 to 48250586 22 + TSS region transcription start site region 4391
1700128I11Rik 14 48360578 to 48362615 2037 - lincRNA gene RIKEN cDNA 1700128I11 gene
Gm23881 14 48364337 to 48364402 65 - miRNA gene predicted gene, 23881
Gm18962 14 48387114 to 48388005 891 - pseudogene predicted gene, 18962
Gm3534 14 48408618 to 48409618 1000 + pseudogene predicted pseudogene 3534
Cpgi6391 14 48445985 to 48446831 846 CpG island CpG island 6391
Tmem260 14 48446123 to 48520708 74585 + protein coding gene transmembrane protein 260
Tssr125340 14 48446265 to 48446276 11 + TSS region transcription start site region 125340
Tssr125341 14 48446340 to 48446429 89 + TSS region transcription start site region 125341
Cpgi6392 14 48451974 to 48452166 192 CpG island CpG island 6392
Tssr125342 14 48464182 to 48464184 2 + TSS region transcription start site region 125342
Gm49519 14 48518236 to 48560287 42051 + unclassified non-coding RNA gene predicted gene, 49519
Gm49096 14 48530358 to 48532665 2307 + unclassified gene predicted gene, 49096
4930572G02Rik 14 48537991 to 48571888 33897 + lincRNA gene RIKEN cDNA 4930572G02 gene
Tssr125343 14 48538347 to 48538367 20 + TSS region transcription start site region 125343
Tssr125344 14 48553257 to 48553266 9 + TSS region transcription start site region 125344
Tssr125345 14 48580621 to 48580625 4 + TSS region transcription start site region 125345
Gm49120 14 48590599 to 48596402 5803 + lincRNA gene predicted gene, 49120
D14Mit121 14 48626981 to 48627130 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 121
Gm35766 14 48636152 to 48640715 4563 + lincRNA gene predicted gene, 35766
Gm49151 14 48643461 to 48649774 6313 + lincRNA gene predicted gene, 49151
Cpgi6393 14 48651642 to 48651927 285 CpG island CpG island 6393
Gm23469 14 48652499 to 48652602 103 + snRNA gene predicted gene, 23469
Tssr125346 14 48654826 to 48654851 25 + TSS region transcription start site region 125346
Tssr125347 14 48655281 to 48655295 14 + TSS region transcription start site region 125347
Tssr125348 14 48655306 to 48655318 12 + TSS region transcription start site region 125348
Cpgi6394 14 48655333 to 48655490 157 CpG island CpG island 6394
Otx2 14 48657452 to 48667644 10192 - protein coding gene orthodenticle homeobox 2
Cpgi6395 14 48662063 to 48662619 556 CpG island CpG island 6395
Tssr128341 14 48662740 to 48662751 11 - TSS region transcription start site region 128341
Cpgi6396 14 48664899 to 48665545 646 CpG island CpG island 6396
Tssr128342 14 48665098 to 48665115 17 - TSS region transcription start site region 128342
Cpgi6397 14 48665956 to 48667032 1076 CpG island CpG island 6397
Tssr128343 14 48667432 to 48667450 18 - TSS region transcription start site region 128343
Tssr128344 14 48667477 to 48667478 1 - TSS region transcription start site region 128344
Tssr128345 14 48667511 to 48667550 39 - TSS region transcription start site region 128345
Tssr125349 14 48667651 to 48667653 2 + TSS region transcription start site region 125349
Cpgi6398 14 48668834 to 48669205 371 CpG island CpG island 6398
Otx2os1 14 48669288 to 48793348 124060 + lincRNA gene orthodenticle homeobox 2 opposite strand 1
Tssr125350 14 48670118 to 48670130 12 + TSS region transcription start site region 125350
Tssr125351 14 48670147 to 48670153 6 + TSS region transcription start site region 125351
Tssr4392 14 48670189 to 48670202 13 + TSS region transcription start site region 4392
Tssr125352 14 48670285 to 48670334 49 + TSS region transcription start site region 125352
Gm49154 14 48672094 to 48673899 1805 - unclassified gene predicted gene, 49154
Cpgi6399 14 48673558 to 48674581 1023 CpG island CpG island 6399
Tssr125353 14 48694913 to 48694924 11 + TSS region transcription start site region 125353
Gm48909 14 48695601 to 48695981 380 - pseudogene predicted gene 48909
Gm25380 14 48695982 to 48696088 106 - snRNA gene predicted gene, 25380
Gm49153 14 48704184 to 48706120 1936 + unclassified gene predicted gene, 49153
Gm38660 14 48707989 to 48720509 12520 + lncRNA gene predicted gene, 38660
Gm49156 14 48727414 to 48740809 13395 - lincRNA gene predicted gene, 49156
Tssr128346 14 48742330 to 48742344 14 - TSS region transcription start site region 128346
Tssr125354 14 48760863 to 48760866 3 + TSS region transcription start site region 125354
Gm22699 14 48769354 to 48769458 104 - snRNA gene predicted gene, 22699